(cache)NCBI Blast:Protein Sequence

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Search Parameters
Search parameter name	Search parameter value
Program	blastp
Word size	5
Expect value	0.05
Hitlist size	100
Gapcosts	11,1
Matrix	BLOSUM62
Filter string	F
Genetic Code	1
Window Size	40
Threshold	0
Composition-based stats	2

Database
Database parameter name	Database parameter value
Posted date	Nov 27, 2025 4:56 PM
Number of letters	149,722,093,621
Number of sequences	468,861,566
Entrez query	Includes: Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	0.321237	0.267
K	0.136974	0.041
H	0.40656	0.14
Alpha	0.7916	1.9
Alpha_v	4.96466	42.6028
Sigma		43.6362

Job Title

Protein Sequence ...

RID

M3S82YT2014 Search expires on 12-18 05:45 am

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Results for

Program

BLASTP

Citation
Reference
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference - compositional score matrix adjustment
Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Database

ClusteredNR

See details

Query ID

lcl|Query_8556014

Description

unnamed protein product ...

Molecule type

amino acid

Query Length

2165

Other reports

Distance tree of results Multiple alignment MSA viewer

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Clusters

select all
100 clusters selected

, Reading indexes 1-5, displaying indexes 1-5, Reading indexes 6-10, displaying indexes 6-10

Clusters producing significant alignments:
Select for downloading or viewing reports	Cluster Composition Click the to see the cluster contents	Cluster Ancestor	Cluster Representative Sequence Representative may differ from filtered organism(s)	Scientific Name	Taxid	Max Score	Total Score	Query Cover	Per. Ident	Acc. Len	Accession
1Select seq ref\|NP_044598.1\|	7693 member(s), 10 organism(s) NP_044598.1( Pneumoviridae ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	Polymerase (L) [Human respiratory syncytial virus A]	Pneumoviridae	11244	4379	4379	100%	98.38%	2165	NP_044598.1
2Select seq gb\|XCH38232.1\|	4 member(s), 2 organism(s) XCH38232.1( human respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	human respiratory syncytial virus	11250	4010	4010	94%	95.55%	2044	XCH38232.1
3Select seq gb\|XCH38144.1\|	1 member(s), 1 organism(s) XCH38144.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	4008	4008	94%	95.50%	2044	XCH38144.1
4Select seq gb\|WXH84863.1\|	8 member(s), 2 organism(s) WXH84863.1( Orthopneumovirus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	Orthopneumovirus	1868215	3969	3969	100%	89.71%	2167	WXH84863.1
5Select seq gb\|AHW81152.1\|	4 member(s), 2 organism(s) AHW81152.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	L polymerase [Respiratory syncytial virus type A]	Human respiratory syncytial virus A	208893	3905	4007	91%	99.06%	2165	AHW81152.1
6Select seq gb\|AHA83633.1\|	1 member(s), 1 organism(s) AHA83633.1( human respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	putative RNA-directed RNA polymerase L, partial [human respiratory syncytial virus]	human respiratory syncytial virus	11250	3884	3884	88%	98.53%	1909	AHA83633.1
7Select seq gb\|WAO97858.1\|	1 member(s), 1 organism(s) WAO97858.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	large polymerase [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3825	3825	100%	88.13%	2165	WAO97858.1
8Select seq gb\|AHW81342.1\|	1 member(s), 1 organism(s) AHW81342.1( Respiratory syncytial virus type A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	L polymerase [Respiratory syncytial virus type A]	Respiratory syncytial virus type A	1439707	3801	3801	88%	97.11%	2165	AHW81342.1
9Select seq gb\|XQO98681.1\|	1 member(s), 1 organism(s) XQO98681.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3779	3779	89%	95.54%	2148	XQO98681.1
10Select seq ref\|NP_048058.1\|	20 member(s), 3 organism(s) NP_048058.1( Orthopneumovirus bovis ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	Polymerase protein [bovine respiratory syncytial virus]	Orthopneumovirus bovis	3050248	3765	3765	100%	84.11%	2162	NP_048058.1
11Select seq gb\|XPR31297.1\|	93 member(s), 3 organism(s) XPR31297.1( Orthopneumovirus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	Orthopneumovirus	1868215	3745	3745	100%	85.96%	2166	XPR31297.1
12Select seq gb\|XPR31210.1\|	1 member(s), 1 organism(s) XPR31210.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3731	3731	100%	86.96%	2163	XPR31210.1
13Select seq gb\|XQO99066.1\|	1 member(s), 1 organism(s) XQO99066.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3727	3727	88%	95.79%	2148	XQO99066.1
14Select seq gb\|XAR00679.1\|	31 member(s), 1 organism(s) XAR00679.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3724	3889	92%	95.79%	2148	XAR00679.1
15Select seq gb\|XQO98307.1\|	1 member(s), 1 organism(s) XQO98307.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3724	3724	88%	95.68%	2148	XQO98307.1
16Select seq gb\|XNJ65630.1\|	1 member(s), 1 organism(s) XNJ65630.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3723	3723	85%	97.83%	2152	XNJ65630.1
17Select seq gb\|XQO99022.1\|	1 member(s), 1 organism(s) XQO99022.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3722	3722	88%	95.68%	2148	XQO99022.1
18Select seq gb\|AEQ63512.2\|	8 member(s), 3 organism(s) AEQ63512.2( human respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	large polymerase, partial [human respiratory syncytial virus]	human respiratory syncytial virus	11250	3716	3716	90%	93.53%	1947	AEQ63512.2
19Select seq gb\|YAV97995.1\|	1 member(s), 1 organism(s) YAV97995.1( Respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Respiratory syncytial virus]	Respiratory syncytial virus	12814	3691	3691	100%	85.16%	2156	YAV97995.1
20Select seq gb\|XQO98934.1\|	1 member(s), 1 organism(s) XQO98934.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3684	3684	87%	95.13%	2140	XQO98934.1
21Select seq gb\|XZG21317.1\|	43 member(s), 1 organism(s) XZG21317.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	3649	3649	100%	84.63%	2165	XZG21317.1
22Select seq gb\|XQO98198.1\|	1 member(s), 1 organism(s) XQO98198.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3608	3608	88%	94.31%	2148	XQO98198.1
23Select seq gb\|QFX69115.1\|	1 member(s), 1 organism(s) QFX69115.1( human respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	L-GFP [human respiratory syncytial virus]	human respiratory syncytial virus	11250	3565	4435	100%	99.60%	2411	QFX69115.1
24Select seq gb\|AOD40688.1\|	2 member(s), 2 organism(s) AOD40688.1( human respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-directed RNA polymerase, partial [human respiratory syncytial virus]	human respiratory syncytial virus	11250	3562	3562	81%	98.58%	1755	AOD40688.1
25Select seq gb\|XQO97703.1\|	3 member(s), 1 organism(s) XQO97703.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3520	3793	93%	91.66%	2148	XQO97703.1
26Select seq gb\|AEQ63666.1\|	1 member(s), 1 organism(s) AEQ63666.1( Respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	large polymerase [Respiratory syncytial virus]	Respiratory syncytial virus	12814	3480	3658	94%	88.47%	2165	AEQ63666.1
27Select seq gb\|XPR31429.1\|	1 member(s), 1 organism(s) XPR31429.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	3479	3479	100%	80.93%	2166	XPR31429.1
28Select seq gb\|XQP00948.1\|	1 member(s), 1 organism(s) XQP00948.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3452	3452	83%	94.13%	1789	XQP00948.1
29Select seq gb\|ANZ79740.1\|	5 member(s), 2 organism(s) ANZ79740.1( human respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	putative RNA-directed RNA polymerase L, partial [human respiratory syncytial virus]	human respiratory syncytial virus	11250	3445	3445	84%	92.99%	1811	ANZ79740.1
30Select seq gb\|YAV98281.1\|	1 member(s), 1 organism(s) YAV98281.1( Respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Respiratory syncytial virus]	Respiratory syncytial virus	12814	3440	3440	88%	88.58%	1908	YAV98281.1
31Select seq gb\|WAK85795.1\|	1 member(s), 1 organism(s) WAK85795.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3430	3430	100%	82.06%	2157	WAK85795.1
32Select seq gb\|XAM23627.1\|	3 member(s), 1 organism(s) XAM23627.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	3422	3536	97%	83.06%	2166	XAM23627.1
33Select seq gb\|QYW09927.1\|	1 member(s), 1 organism(s) QYW09927.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3382	3673	96%	87.57%	2155	QYW09927.1
34Select seq gb\|XZG21031.1\|	27 member(s), 1 organism(s) XZG21031.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3347	3347	100%	80.63%	2163	XZG21031.1
35Select seq gb\|XAR00659.1\|	1 member(s), 1 organism(s) XAR00659.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3346	3754	92%	95.27%	2148	XAR00659.1
36Select seq gb\|WWM14464.1\|	1 member(s), 1 organism(s) WWM14464.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	3313	3313	80%	93.45%	1725	WWM14464.1
37Select seq gb\|WWM13969.1\|	1 member(s), 1 organism(s) WWM13969.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	3285	3285	79%	93.79%	1707	WWM13969.1
38Select seq gb\|WAO97792.1\|	1 member(s), 1 organism(s) WAO97792.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	large polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3190	3477	89%	91.61%	2045	WAO97792.1
39Select seq gb\|XHB17147.1\|	1 member(s), 1 organism(s) XHB17147.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3153	3809	86%	98.64%	2136	XHB17147.1
40Select seq gb\|XLM44291.1\|	1 member(s), 1 organism(s) XLM44291.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3121	3710	85%	98.50%	2145	XLM44291.1
41Select seq gb\|WFP22167.2\|	1 member(s), 1 organism(s) WFP22167.2( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3118	3118	71%	98.69%	1532	WFP22167.2
42Select seq gb\|WKU63440.2\|	1 member(s), 1 organism(s) WKU63440.2( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3110	3110	71%	98.37%	1532	WKU63440.2
43Select seq gb\|AWO12275.1\|	1 member(s), 1 organism(s) AWO12275.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3107	3297	80%	96.63%	2023	AWO12275.1
44Select seq gb\|XPR31264.1\|	1 member(s), 1 organism(s) XPR31264.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	3097	3373	88%	87.15%	2166	XPR31264.1
45Select seq gb\|WKU63490.1\|	1 member(s), 1 organism(s) WKU63490.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	3093	3699	84%	98.62%	2161	WKU63490.1
46Select seq gb\|WVQ61304.1\|	8 member(s), 2 organism(s) WVQ61304.1( human respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [human respiratory syncytial virus]	human respiratory syncytial virus	11250	3013	3729	90%	95.14%	2148	WVQ61304.1
47Select seq gb\|XRO62962.1\|	1 member(s), 1 organism(s) XRO62962.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2999	3954	93%	98.04%	2165	XRO62962.1
48Select seq gb\|XAR00412.1\|	1 member(s), 1 organism(s) XAR00412.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2994	3704	90%	94.69%	2148	XAR00412.1
49Select seq gb\|AYR18223.1\|	1 member(s), 1 organism(s) AYR18223.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-directed RNA polymerase, partial [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2985	2985	72%	93.10%	1565	AYR18223.1
50Select seq gb\|QYW13624.1\|	1 member(s), 1 organism(s) QYW13624.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	polymerase [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2982	3426	89%	87.33%	2166	QYW13624.1
51Select seq gb\|WXH84918.1\|	1 member(s), 1 organism(s) WXH84918.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2970	3542	91%	88.45%	2165	WXH84918.1
52Select seq gb\|WDA65249.1\|	3 member(s), 1 organism(s) WDA65249.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2949	3677	90%	92.48%	2166	WDA65249.1
53Select seq gb\|QYW14282.1\|	1 member(s), 1 organism(s) QYW14282.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	polymerase [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2942	3585	92%	88.37%	2166	QYW14282.1
54Select seq gb\|QJU69994.1\|	16 member(s), 4 organism(s) QJU69994.1( human respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-directed RNA polymerase L [human respiratory syncytial virus]	human respiratory syncytial virus	11250	2929	2929	71%	93.98%	1552	QJU69994.1
55Select seq gb\|XAR00322.1\|	3 member(s), 1 organism(s) XAR00322.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2912	3622	90%	92.62%	2148	XAR00322.1
56Select seq gb\|XAR00362.1\|	2 member(s), 1 organism(s) XAR00362.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2907	3622	90%	92.49%	2148	XAR00362.1
57Select seq gb\|XPR31123.1\|	1 member(s), 1 organism(s) XPR31123.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2903	3208	87%	87.76%	2150	XPR31123.1
58Select seq gb\|AYR18226.1\|	1 member(s), 1 organism(s) AYR18226.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-directed RNA polymerase, partial [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2886	2886	70%	92.77%	1521	AYR18226.1
59Select seq gb\|AYR18245.1\|	1 member(s), 1 organism(s) AYR18245.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-directed RNA polymerase, partial [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2876	2876	70%	92.44%	1521	AYR18245.1
60Select seq gb\|XQT75251.1\|	1 member(s), 1 organism(s) XQT75251.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2871	3678	87%	94.60%	2165	XQT75251.1
61Select seq gb\|XPR31156.1\|	2 member(s), 1 organism(s) XPR31156.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2866	3213	85%	87.15%	1969	XPR31156.1
62Select seq gb\|XAR00342.1\|	3 member(s), 1 organism(s) XAR00342.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2855	3652	85%	98.93%	2148	XAR00342.1
63Select seq gb\|AII22035.1\|	1 member(s), 1 organism(s) AII22035.1( human respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	putative RNA-directed RNA polymerase L, partial [human respiratory syncytial virus]	human respiratory syncytial virus	11250	2851	2851	65%	98.58%	1406	AII22035.1
64Select seq gb\|UOA00762.1\|	8 member(s), 1 organism(s) UOA00762.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-directed RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2813	3621	91%	94.64%	2107	UOA00762.1
65Select seq gb\|XNJ65498.1\|	1 member(s), 1 organism(s) XNJ65498.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2806	3718	92%	95.98%	2139	XNJ65498.1
66Select seq gb\|WVQ61638.1\|	8 member(s), 2 organism(s) WVQ61638.1( human respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [human respiratory syncytial virus]	human respiratory syncytial virus	11250	2803	3892	94%	95.14%	2148	WVQ61638.1
67Select seq gb\|YAV98083.1\|	1 member(s), 1 organism(s) YAV98083.1( Respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Respiratory syncytial virus]	Respiratory syncytial virus	12814	2793	3142	84%	85.86%	2112	YAV98083.1
68Select seq gb\|WPW24840.1\|	1 member(s), 1 organism(s) WPW24840.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2780	3493	89%	91.24%	2140	WPW24840.1
69Select seq gb\|UOA02430.1\|	1 member(s), 1 organism(s) UOA02430.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-directed RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2776	2776	64%	98.25%	1375	UOA02430.1
70Select seq gb\|WPW25407.1\|	1 member(s), 1 organism(s) WPW25407.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2758	3839	94%	93.88%	2148	WPW25407.1
71Select seq gb\|QYW08899.1\|	1 member(s), 1 organism(s) QYW08899.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2750	3662	96%	89.72%	2162	QYW08899.1
72Select seq gb\|WWB00336.1\|	5 member(s), 3 organism(s) WWB00336.1( Orthopneumovirus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Respiratory syncytial virus]	Orthopneumovirus	1868215	2736	3659	87%	94.04%	2166	WWB00336.1
73Select seq gb\|AEQ63556.2\|	1 member(s), 1 organism(s) AEQ63556.2( human respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	large polymerase [human respiratory syncytial virus]	human respiratory syncytial virus	11250	2732	3576	85%	96.86%	2165	AEQ63556.2
74Select seq gb\|UOA00786.1\|	1 member(s), 1 organism(s) UOA00786.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-directed RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2731	2731	64%	96.73%	1378	UOA00786.1
75Select seq gb\|QYW12490.1\|	1 member(s), 1 organism(s) QYW12490.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	polymerase, partial [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2704	3153	93%	80.59%	2166	QYW12490.1
76Select seq gb\|XHB17730.1\|	5 member(s), 1 organism(s) XHB17730.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2692	3614	87%	95.21%	2166	XHB17730.1
77Select seq gb\|XAH03861.1\|	2 member(s), 1 organism(s) XAH03861.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2685	3564	86%	95.13%	2143	XAH03861.1
78Select seq gb\|QIH29418.1\|	1 member(s), 1 organism(s) QIH29418.1( human respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-directed RNA polymerase [human respiratory syncytial virus]	human respiratory syncytial virus	11250	2651	2651	62%	95.35%	1334	QIH29418.1
79Select seq gb\|XJU67465.1\|	1 member(s), 1 organism(s) XJU67465.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2650	3430	90%	86.63%	2112	XJU67465.1
80Select seq gb\|XPR31275.1\|	1 member(s), 1 organism(s) XPR31275.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2649	3555	95%	90.61%	2166	XPR31275.1
81Select seq gb\|WDA65259.1\|	1 member(s), 1 organism(s) WDA65259.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2634	3357	90%	84.13%	2166	WDA65259.1
82Select seq gb\|WPW24739.1\|	2 member(s), 1 organism(s) WPW24739.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2603	3827	96%	91.28%	2148	WPW24739.1
83Select seq gb\|WPW24550.1\|	3 member(s), 1 organism(s) WPW24550.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2593	3606	91%	91.06%	2148	WPW24550.1
84Select seq gb\|QYW12921.1\|	1 member(s), 1 organism(s) QYW12921.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	polymerase, partial [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2576	3308	84%	89.65%	2128	QYW12921.1
85Select seq gb\|XRL80916.1\|	2 member(s), 1 organism(s) XRL80916.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2574	3697	97%	86.93%	2165	XRL80916.1
86Select seq gb\|XLM45083.1\|	1 member(s), 1 organism(s) XLM45083.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2573	3922	93%	94.42%	2165	XLM45083.1
87Select seq gb\|XLM44544.1\|	2 member(s), 1 organism(s) XLM44544.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2570	3940	93%	94.41%	2165	XLM44544.1
88Select seq gb\|XBQ62612.1\|	1 member(s), 1 organism(s) XBQ62612.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2566	3524	88%	92.01%	2158	XBQ62612.1
89Select seq gb\|XHB14815.1\|	1 member(s), 1 organism(s) XHB14815.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2559	3845	91%	94.52%	2165	XHB14815.1
90Select seq gb\|AHV80784.1\|	1 member(s), 1 organism(s) AHV80784.1( human respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	putative RNA-directed RNA polymerase L, partial [human respiratory syncytial virus]	human respiratory syncytial virus	11250	2545	2545	62%	92.19%	1344	AHV80784.1
91Select seq gb\|XBR31690.1\|	1 member(s), 1 organism(s) XBR31690.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2541	3534	85%	97.55%	2148	XBR31690.1
92Select seq gb\|AII22088.1\|	1 member(s), 1 organism(s) AII22088.1( human respiratory syncytial virus ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	putative RNA-directed RNA polymerase L, partial [human respiratory syncytial virus]	human respiratory syncytial virus	11250	2535	2535	62%	92.30%	1338	AII22088.1
93Select seq gb\|XLM44621.1\|	1 member(s), 1 organism(s) XLM44621.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2498	3846	93%	92.22%	2165	XLM44621.1
94Select seq gb\|XDF40618.1\|	71 member(s), 1 organism(s) XDF40618.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2484	3698	97%	88.67%	2166	XDF40618.1
95Select seq gb\|XLM44588.1\|	1 member(s), 1 organism(s) XLM44588.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2458	3808	93%	90.86%	2165	XLM44588.1
96Select seq gb\|QYW13777.1\|	3 member(s), 1 organism(s) QYW13777.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	polymerase [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2457	3613	95%	86.42%	2166	QYW13777.1
97Select seq gb\|WWO16563.1\|	2 member(s), 1 organism(s) WWO16563.1( Human respiratory syncytial virus B ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus B]	Human respiratory syncytial virus B	208895	2450	3846	97%	89.07%	2160	WWO16563.1
98Select seq gb\|XUX58251.1\|	2 member(s), 1 organism(s) XUX58251.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2433	3402	80%	94.88%	2003	XUX58251.1
99Select seq gb\|XQP01025.1\|	2 member(s), 1 organism(s) XQP01025.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2409	3521	80%	98.31%	2148	XQP01025.1
100Select seq gb\|WJJ42731.1\|	1 member(s), 1 organism(s) WJJ42731.1( Human respiratory syncytial virus A ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment Showing cluster : Filtered members () All members ()	viruses	RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	Human respiratory syncytial virus A	208893	2388	2871	75%	88.75%	2165	WJJ42731.1

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  The graphic is an overview of the database clusters aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
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Putative conserved domains have been detected, click on the image below for detailed results.

Distribution of the top 188 Blast Hits on 100 subject clusters

Query

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Alignments

100 clusters selected
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Polymerase (L) [Human respiratory syncytial virus A]

Sequence ID: NP_044598.1Length: 2165Number of Matches: 1

Related Information

Gene-associated gene details

Range 1: 1 to 2165GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
4379 bits(11358)	0.0()	Compositional matrix adjust.	2130/2165(98%)	2145/2165(99%)	0/2165(0%)

Query  1     MDPIINGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDYTNLISRQNPLIEHMN  60
             MDPIINGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDYTNLISRQNPLIEH+N
Sbjct  1     MDPIINGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDYTNLISRQNPLIEHIN  60

Query  61    LKKLNITQSLISKYHKGEIKLEEPTYFQSLLMTYKSMTSSEQIATTNLLKKIIRRAIEIS  120
             LKKLNITQSL+SKYHKGEIK+EEPTYFQSLLMTYKSMTS EQI TTNLLKKIIRRAIEIS
Sbjct  61    LKKLNITQSLMSKYHKGEIKIEEPTYFQSLLMTYKSMTSLEQITTTNLLKKIIRRAIEIS  120

Query  121   DVKVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDILSAVKDNQSHLKADKNHSTK  180
             DVKVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDIL AVKDNQSHLKA KNHSTK
Sbjct  121   DVKVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDILLAVKDNQSHLKAVKNHSTK  180

Query  181   QKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNNILTQYRSNEVKNHGFTLIDNQTLS  240
             QKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNNILTQYRS+EVKNHGF LIDN TL+
Sbjct  181   QKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNNILTQYRSSEVKNHGFILIDNHTLN  240

Query  241   GFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLG  300
             GFQFILNQYGCIVYHKELKRITVTTYNQFLTWK+ISLSRLNVCLITWISNCLNTLNKSLG
Sbjct  241   GFQFILNQYGCIVYHKELKRITVTTYNQFLTWKNISLSRLNVCLITWISNCLNTLNKSLG  300

Query  301   LRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSM  360
             LRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSM
Sbjct  301   LRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSM  360

Query  361   LNNITDAANKAQKNLLSRVCHTLLDKTVSDNIINGRWIILLSKFLKLIKLAGDNNLNNLS  420
             LNNITDAANKAQKNLLSRVCHTLLDKTVSDNIINGRWIILLSKFLKLIKLAGDNNLNNLS
Sbjct  361   LNNITDAANKAQKNLLSRVCHTLLDKTVSDNIINGRWIILLSKFLKLIKLAGDNNLNNLS  420

Query  421   ELYFLFRIFGHPMVDERQAMDAVKINCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRW  480
             ELYFLFRIFGHPMVDERQAMDAVK+NCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRW
Sbjct  421   ELYFLFRIFGHPMVDERQAMDAVKVNCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRW  480

Query  481   PTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDK  540
             PTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDK
Sbjct  481   PTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDK  540

Query  541   AISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSESDKSRRVLEYYLRDNKFNECDLYNC  600
             AISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSESDKSRRVLEYYLRDNKFNECDLYNC
Sbjct  541   AISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSESDKSRRVLEYYLRDNKFNECDLYNC  600

Query  601   VVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLT  660
             VVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLT
Sbjct  601   VVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLT  660

Query  661   RYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVL  720
             RYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVL
Sbjct  661   RYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVL  720

Query  721   DELHGVQSLFSWLHLTIPHVTIICTYRHAPPYIGDHIVDLNNVDEQSGLYRYHMGGIEGW  780
             DELHGVQSLF WLHL IPHVTIICTYRHAPPYI DHIVDLNNVDEQSGLYRYHMGGIEGW
Sbjct  721   DELHGVQSLFFWLHLAIPHVTIICTYRHAPPYIRDHIVDLNNVDEQSGLYRYHMGGIEGW  780

Query  781   CQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKPIRLMEGQTHAQADYLLALNS  840
             CQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKP+RLMEGQTHAQADYLLALNS
Sbjct  781   CQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKPVRLMEGQTHAQADYLLALNS  840

Query  841   LKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD  900
             LKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD
Sbjct  841   LKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD  900

Query  901   FKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLK  960
             FKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLK
Sbjct  901   FKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLK  960

Query  961   HLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYT  1020
             HLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYT
Sbjct  961   HLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYT  1020

Query  1021  NHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLA  1080
             NHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLA
Sbjct  1021  NHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLA  1080

Query  1081  VTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNL  1140
             VTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNL
Sbjct  1081  VTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNL  1140

Query  1141  ISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSIT  1200
             ISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRI PLDCNRDKREILSMENLSIT
Sbjct  1141  ISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRIFPLDCNRDKREILSMENLSIT  1200

Query  1201  ELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTISSGIIIEKYNVNSLTRGERGPTK  1260
             ELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTI+SGIIIEKYNVNSLTRGERGPTK
Sbjct  1201  ELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTIASGIIIEKYNVNSLTRGERGPTK  1260

Query  1261  PWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLT  1320
             PWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIG LGLT
Sbjct  1261  PWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGILGLT  1320

Query  1321  YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDED  1380
             YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDED
Sbjct  1321  YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDED  1380

Query  1381  IDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVI  1440
             IDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVI
Sbjct  1381  IDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVI  1440

Query  1441  QKQHMFLPDKISLTQYVELFLSNKTLKSGSHVNSNLILAHKISDYFHNTYILSTNLAGHW  1500
             QKQHMFLPDKISLTQYVELFLSNKTLKSGSHVNSNLILAHKISDYFHNTYILSTNLAGHW
Sbjct  1441  QKQHMFLPDKISLTQYVELFLSNKTLKSGSHVNSNLILAHKISDYFHNTYILSTNLAGHW  1500

Query  1501  ILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYGKAKLECDMNT  1560
             ILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYG+AKLECDMNT
Sbjct  1501  ILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYGRAKLECDMNT  1560

Query  1561  SDLLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEF  1620
             SDLLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEF
Sbjct  1561  SDLLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEF  1620

Query  1621  TVCPWVVNIDYHPTHMKAILTYIDLVRMGLINIDRIHIKNKHKFNDEFYTSNLFYINYNF  1680
             TVCPWVVNIDYHPTHMKAILTYIDLVRMGLINID+I+IKNKHKFNDEFYTSNLFYINYNF
Sbjct  1621  TVCPWVVNIDYHPTHMKAILTYIDLVRMGLINIDKIYIKNKHKFNDEFYTSNLFYINYNF  1680

Query  1681  SDNTHLLTKHIRIANSELENNYNKLYHPTPETLENILANPIKSNDKKTLNDYCIGKNVDS  1740
             SDNTHLLTKHIRIANSELENNYNKLYHPTPETLENIL NP+K NDKKTLNDYCIGKNVDS
Sbjct  1681  SDNTHLLTKHIRIANSELENNYNKLYHPTPETLENILTNPVKCNDKKTLNDYCIGKNVDS  1740

Query  1741  IMLPLLSNKKLIKSSAMIRTNYSKQDLYNLFPMVVIDRIIDHSGNTAKSNQLYTTTSHQI  1800
             IMLPLLSNKKLIKS  MIRTNYSKQDLYNLFP VVID+IIDHSGNTAKSNQLYTTTSHQI
Sbjct  1741  IMLPLLSNKKLIKSPTMIRTNYSKQDLYNLFPTVVIDKIIDHSGNTAKSNQLYTTTSHQI  1800

Query  1801  SLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLL  1860
              LVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDL IKDPNCIAFIGEGAGNLL
Sbjct  1801  PLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDLIIKDPNCIAFIGEGAGNLL  1860

Query  1861  LRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWS  1920
             LRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWS
Sbjct  1861  LRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWS  1920

Query  1921  YLHIKFAEPISLFVCDAELSVTVNWSKIIIEWSKHVRKCKYCSSVNKCMLIVKYHAQDDI  1980
             YLHIKFAEPISLFVCDAEL VTVNWSKIIIEWSKHVRKCKYCSSVNKC LIVKYHAQDDI
Sbjct  1921  YLHIKFAEPISLFVCDAELPVTVNWSKIIIEWSKHVRKCKYCSSVNKCTLIVKYHAQDDI  1980

Query  1981  DFKLDNITILKTYVCLGSKLKGSEVYLVLTIGPANIFPVFNVVQNAKLILSRTKNFIMPK  2040
             DFKLDNITILKTYVCLGSKLKGSEVYLVLTIGPAN+FPVFNVVQNAKLILSRTKNFIMPK
Sbjct  1981  DFKLDNITILKTYVCLGSKLKGSEVYLVLTIGPANVFPVFNVVQNAKLILSRTKNFIMPK  2040

Query  2041  KADKESIDANIKSLIPFLCYPITKKGINTALSKLKSVVSGDILSYSIAGRNEVFSNKLIN  2100
             KADKESIDANIKSLIPFLCYPITKKGINTALSKLKSVVSGDILSYSIAGRNEVFSNKLIN
Sbjct  2041  KADKESIDANIKSLIPFLCYPITKKGINTALSKLKSVVSGDILSYSIAGRNEVFSNKLIN  2100

Query  2101  HKHMNILKWFNHVLNFRSTELNYNHLYMVESTYPYLSELLNSLTTNELKKLIKITGSLLY  2160
             HKHMNILKWFNHVLNFRSTELNYNHLYMVESTYPYLSELLNSLTTNELKKLIKITGSLLY
Sbjct  2101  HKHMNILKWFNHVLNFRSTELNYNHLYMVESTYPYLSELLNSLTTNELKKLIKITGSLLY  2160

Query  2161  NFHNE  2165
             NFHNE
Sbjct  2161  NFHNE  2165

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RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]

Sequence ID: XCH38232.1Length: 2044Number of Matches: 1

Range 1: 1 to 2044GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
4010 bits(10400)	0.0()	Compositional matrix adjust.	1953/2044(96%)	1973/2044(96%)	0/2044(0%)

Query  1     MDPIINGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDYTNLISRQNPLIEHMN  60
             MDPII+GNSANVYLTDSYLKGVISFSECNALGSYIFNGPYL                   
Sbjct  1     MDPIISGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLXXXXXXXXXXXXXXXXXXX  60

Query  61    LKKLNITQSLISKYHKGEIKLEEPTYFQSLLMTYKSMTSSEQIATTNLLKKIIRRAIEIS  120
                                                  TSSEQ  TTNLLKKIIRRAIEIS
Sbjct  61    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSSEQTTTTNLLKKIIRRAIEIS  120

Query  121   DVKVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDILSAVKDNQSHLKADKNHSTK  180
             DVKVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDIL AVKDNQSHLKADKN STK
Sbjct  121   DVKVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDILLAVKDNQSHLKADKNQSTK  180

Query  181   QKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNNILTQYRSNEVKNHGFTLIDNQTLS  240
             QKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLN+ILTQYRS+EVKNHGF LIDN TLS
Sbjct  181   QKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNSILTQYRSSEVKNHGFILIDNHTLS  240

Query  241   GFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLG  300
             GFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLG
Sbjct  241   GFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLG  300

Query  301   LRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSM  360
             LRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSM
Sbjct  301   LRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSM  360

Query  361   LNNITDAANKAQKNLLSRVCHTLLDKTVSDNIINGRWIILLSKFLKLIKLAGDNNLNNLS  420
             LNNITDAANKAQKNLLSRVCHTLLDKT+SDNIINGRWIILLSKFLKLIKLAGDNNLNNLS
Sbjct  361   LNNITDAANKAQKNLLSRVCHTLLDKTISDNIINGRWIILLSKFLKLIKLAGDNNLNNLS  420

Query  421   ELYFLFRIFGHPMVDERQAMDAVKINCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRW  480
             ELYFLFRIFGHPMVDERQAMDAVK+NCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRW
Sbjct  421   ELYFLFRIFGHPMVDERQAMDAVKVNCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRW  480

Query  481   PTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDK  540
             PTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDK
Sbjct  481   PTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDK  540

Query  541   AISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSESDKSRRVLEYYLRDNKFNECDLYNC  600
             AISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFS+SDKSRRVLEYYLRDNKFNECDL+NC
Sbjct  541   AISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSDSDKSRRVLEYYLRDNKFNECDLHNC  600

Query  601   VVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLT  660
             VVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLT
Sbjct  601   VVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLT  660

Query  661   RYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVL  720
             RYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVL
Sbjct  661   RYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVL  720

Query  721   DELHGVQSLFSWLHLTIPHVTIICTYRHAPPYIGDHIVDLNNVDEQSGLYRYHMGGIEGW  780
             DELHGVQSLFSWLHLTIPHVTIICTYRHAPPYI DHIVDLNNVDEQSGLYRYHMGGIEGW
Sbjct  721   DELHGVQSLFSWLHLTIPHVTIICTYRHAPPYIKDHIVDLNNVDEQSGLYRYHMGGIEGW  780

Query  781   CQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKPIRLMEGQTHAQADYLLALNS  840
             CQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKP+RLMEGQTHAQADY+LALNS
Sbjct  781   CQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKPVRLMEGQTHAQADYMLALNS  840

Query  841   LKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD  900
             LKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD
Sbjct  841   LKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD  900

Query  901   FKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLK  960
             FKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLK
Sbjct  901   FKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLK  960

Query  961   HLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYT  1020
             HLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYT
Sbjct  961   HLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYT  1020

Query  1021  NHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLA  1080
             NHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLA
Sbjct  1021  NHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLA  1080

Query  1081  VTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNL  1140
             VTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNL
Sbjct  1081  VTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNL  1140

Query  1141  ISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSIT  1200
             ISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSIT
Sbjct  1141  ISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSIT  1200

Query  1201  ELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTISSGIIIEKYNVNSLTRGERGPTK  1260
             ELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTI+SGIIIEKYNVNSLTRGERGPTK
Sbjct  1201  ELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTIASGIIIEKYNVNSLTRGERGPTK  1260

Query  1261  PWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLT  1320
             PWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLT
Sbjct  1261  PWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLT  1320

Query  1321  YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDED  1380
             YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDED
Sbjct  1321  YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDED  1380

Query  1381  IDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVI  1440
             IDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVI
Sbjct  1381  IDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVI  1440

Query  1441  QKQHMFLPDKISLTQYVELFLSNKTLKSGSHVNSNLILAHKISDYFHNTYILSTNLAGHW  1500
             QKQHMFLPDKISLTQYVELFLSNKTLKSGS+VNSNLILAHKISDYFHNTYILSTNLAGHW
Sbjct  1441  QKQHMFLPDKISLTQYVELFLSNKTLKSGSNVNSNLILAHKISDYFHNTYILSTNLAGHW  1500

Query  1501  ILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYGKAKLECDMNT  1560
             ILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYG+AKLECDMNT
Sbjct  1501  ILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYGRAKLECDMNT  1560

Query  1561  SDLLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEF  1620
             SDLLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEF
Sbjct  1561  SDLLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEF  1620

Query  1621  TVCPWVVNIDYHPTHMKAILTYIDLVRMGLINIDRIHIKNKHKFNDEFYTSNLFYINYNF  1680
             TVCPWVVNIDYHPTHMKAILTYIDLVRMGLINIDRI+IKNKHKFNDEFYTSNLFYINYNF
Sbjct  1621  TVCPWVVNIDYHPTHMKAILTYIDLVRMGLINIDRIYIKNKHKFNDEFYTSNLFYINYNF  1680

Query  1681  SDNTHLLTKHIRIANSELENNYNKLYHPTPETLENILANPIKSNDKKTLNDYCIGKNVDS  1740
             SDNTHLLTKHIRIANSELE+NYNKLYHPTPETLENIL NP+KSN KKTL+DYCIGKNVDS
Sbjct  1681  SDNTHLLTKHIRIANSELESNYNKLYHPTPETLENILTNPVKSNGKKTLSDYCIGKNVDS  1740

Query  1741  IMLPLLSNKKLIKSSAMIRTNYSKQDLYNLFPMVVIDRIIDHSGNTAKSNQLYTTTSHQI  1800
             IMLP LSNKKLIKSS MIRTNYS+QDLYNLFP VVID+IIDHSGNTAKSNQLYTTTSHQI
Sbjct  1741  IMLPSLSNKKLIKSSTMIRTNYSRQDLYNLFPTVVIDKIIDHSGNTAKSNQLYTTTSHQI  1800

Query  1801  SLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLL  1860
             SLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLL
Sbjct  1801  SLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLL  1860

Query  1861  LRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWS  1920
             LRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWS
Sbjct  1861  LRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWS  1920

Query  1921  YLHIKFAEPISLFVCDAELSVTVNWSKIIIEWSKHVRKCKYCSSVNKCMLIVKYHAQDDI  1980
             YLHIKFAEPISLFVCDAEL VT NWSKIIIEWSKHVRKCKYCSSVNKC LIVKYHAQDDI
Sbjct  1921  YLHIKFAEPISLFVCDAELPVTANWSKIIIEWSKHVRKCKYCSSVNKCTLIVKYHAQDDI  1980

Query  1981  DFKLDNITILKTYVCLGSKLKGSEVYLVLTIGPANIFPVFNVVQNAKLILSRTKNFIMPK  2040
             DFKLDNITILKTYVCLGSKLKGSEVYLV+TIGPAN+FPVFNVVQNAKLILSRTKNFIMPK
Sbjct  1981  DFKLDNITILKTYVCLGSKLKGSEVYLVITIGPANVFPVFNVVQNAKLILSRTKNFIMPK  2040

Query  2041  KADK  2044
             KADK
Sbjct  2041  KADK  2044

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RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]

Sequence ID: XCH38144.1Length: 2044Number of Matches: 1

Range 1: 1 to 2044GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
4008 bits(10395)	0.0()	Compositional matrix adjust.	1952/2044(95%)	1972/2044(96%)	0/2044(0%)

Query  1     MDPIINGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDYTNLISRQNPLIEHMN  60
             MDPII+GNSANVYLTDSYLKGVISFSECNALGSYIFNGPY                    
Sbjct  1     MDPIISGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYXXXXXXXXXXXXXXXXXXXX  60

Query  61    LKKLNITQSLISKYHKGEIKLEEPTYFQSLLMTYKSMTSSEQIATTNLLKKIIRRAIEIS  120
                                                  TSSEQ  TTNLLKKIIRRAIEIS
Sbjct  61    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSSEQTTTTNLLKKIIRRAIEIS  120

Query  121   DVKVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDILSAVKDNQSHLKADKNHSTK  180
             DVKVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDIL AVKDNQSHLKADKN STK
Sbjct  121   DVKVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDILLAVKDNQSHLKADKNQSTK  180

Query  181   QKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNNILTQYRSNEVKNHGFTLIDNQTLS  240
             QKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLN+ILTQYRS+EVKNHGF LIDN TLS
Sbjct  181   QKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNSILTQYRSSEVKNHGFILIDNHTLS  240

Query  241   GFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLG  300
             GFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLG
Sbjct  241   GFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLG  300

Query  301   LRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSM  360
             LRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSM
Sbjct  301   LRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSM  360

Query  361   LNNITDAANKAQKNLLSRVCHTLLDKTVSDNIINGRWIILLSKFLKLIKLAGDNNLNNLS  420
             LNNITDAANKAQKNLLSRVCHTLLDKT+SDNIINGRWIILLSKFLKLIKLAGDNNLNNLS
Sbjct  361   LNNITDAANKAQKNLLSRVCHTLLDKTISDNIINGRWIILLSKFLKLIKLAGDNNLNNLS  420

Query  421   ELYFLFRIFGHPMVDERQAMDAVKINCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRW  480
             ELYFLFRIFGHPMVDERQAMDAVK+NCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRW
Sbjct  421   ELYFLFRIFGHPMVDERQAMDAVKVNCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRW  480

Query  481   PTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDK  540
             PTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDK
Sbjct  481   PTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDK  540

Query  541   AISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSESDKSRRVLEYYLRDNKFNECDLYNC  600
             AISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFS+SDKSRRVLEYYLRDNKFNECDL+NC
Sbjct  541   AISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSDSDKSRRVLEYYLRDNKFNECDLHNC  600

Query  601   VVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLT  660
             VVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLT
Sbjct  601   VVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLT  660

Query  661   RYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVL  720
             RYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVL
Sbjct  661   RYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVL  720

Query  721   DELHGVQSLFSWLHLTIPHVTIICTYRHAPPYIGDHIVDLNNVDEQSGLYRYHMGGIEGW  780
             DELHGVQSLFSWLHLTIPHVTIICTYRHAPPYI DHIVDLNNVDEQSGLYRYHMGGIEGW
Sbjct  721   DELHGVQSLFSWLHLTIPHVTIICTYRHAPPYIKDHIVDLNNVDEQSGLYRYHMGGIEGW  780

Query  781   CQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKPIRLMEGQTHAQADYLLALNS  840
             CQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKP+RLMEGQTHAQADY+LALNS
Sbjct  781   CQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKPVRLMEGQTHAQADYMLALNS  840

Query  841   LKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD  900
             LKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD
Sbjct  841   LKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD  900

Query  901   FKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLK  960
             FKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLK
Sbjct  901   FKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLK  960

Query  961   HLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYT  1020
             HLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYT
Sbjct  961   HLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYT  1020

Query  1021  NHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLA  1080
             NHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLA
Sbjct  1021  NHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLA  1080

Query  1081  VTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNL  1140
             VTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNL
Sbjct  1081  VTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNL  1140

Query  1141  ISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSIT  1200
             ISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSIT
Sbjct  1141  ISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSIT  1200

Query  1201  ELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTISSGIIIEKYNVNSLTRGERGPTK  1260
             ELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTI+SGIIIEKYNVNSLTRGERGPTK
Sbjct  1201  ELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTIASGIIIEKYNVNSLTRGERGPTK  1260

Query  1261  PWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLT  1320
             PWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLT
Sbjct  1261  PWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLT  1320

Query  1321  YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDED  1380
             YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDED
Sbjct  1321  YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDED  1380

Query  1381  IDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVI  1440
             IDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVI
Sbjct  1381  IDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVI  1440

Query  1441  QKQHMFLPDKISLTQYVELFLSNKTLKSGSHVNSNLILAHKISDYFHNTYILSTNLAGHW  1500
             QKQHMFLPDKISLTQYVELFLSNKTLKSGS+VNSNLILAHKISDYFHNTYILSTNLAGHW
Sbjct  1441  QKQHMFLPDKISLTQYVELFLSNKTLKSGSNVNSNLILAHKISDYFHNTYILSTNLAGHW  1500

Query  1501  ILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYGKAKLECDMNT  1560
             ILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYG+AKLECDMNT
Sbjct  1501  ILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYGRAKLECDMNT  1560

Query  1561  SDLLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEF  1620
             SDLLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEF
Sbjct  1561  SDLLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEF  1620

Query  1621  TVCPWVVNIDYHPTHMKAILTYIDLVRMGLINIDRIHIKNKHKFNDEFYTSNLFYINYNF  1680
             TVCPWVVNIDYHPTHMKAILTYIDLVRMGLINIDRI+IKNKHKFNDEFYTSNLFYINYNF
Sbjct  1621  TVCPWVVNIDYHPTHMKAILTYIDLVRMGLINIDRIYIKNKHKFNDEFYTSNLFYINYNF  1680

Query  1681  SDNTHLLTKHIRIANSELENNYNKLYHPTPETLENILANPIKSNDKKTLNDYCIGKNVDS  1740
             SDNTHLLTKHIRIANSELE+NYNKLYHPTPETLENIL NP+KSN KKTL+DYCIGKNVDS
Sbjct  1681  SDNTHLLTKHIRIANSELESNYNKLYHPTPETLENILTNPVKSNGKKTLSDYCIGKNVDS  1740

Query  1741  IMLPLLSNKKLIKSSAMIRTNYSKQDLYNLFPMVVIDRIIDHSGNTAKSNQLYTTTSHQI  1800
             IMLP LSNKKLIKSS MIRTNYS+QDLYNLFP VVID+IIDHSGNTAKSNQLYTTTSHQI
Sbjct  1741  IMLPSLSNKKLIKSSTMIRTNYSRQDLYNLFPTVVIDKIIDHSGNTAKSNQLYTTTSHQI  1800

Query  1801  SLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLL  1860
             SLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLL
Sbjct  1801  SLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLL  1860

Query  1861  LRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWS  1920
             LRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWS
Sbjct  1861  LRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWS  1920

Query  1921  YLHIKFAEPISLFVCDAELSVTVNWSKIIIEWSKHVRKCKYCSSVNKCMLIVKYHAQDDI  1980
             YLHIKFAEPISLFVCDAEL VT NWSKIIIEWSKHVRKCKYCSSVNKC LIVKYHAQDDI
Sbjct  1921  YLHIKFAEPISLFVCDAELPVTANWSKIIIEWSKHVRKCKYCSSVNKCTLIVKYHAQDDI  1980

Query  1981  DFKLDNITILKTYVCLGSKLKGSEVYLVLTIGPANIFPVFNVVQNAKLILSRTKNFIMPK  2040
             DFKLDNITILKTYVCLGSKLKGSEVYLV+TIGPAN+FPVFNVVQNAKLILSRTKNFIMPK
Sbjct  1981  DFKLDNITILKTYVCLGSKLKGSEVYLVITIGPANVFPVFNVVQNAKLILSRTKNFIMPK  2040

Query  2041  KADK  2044
             KADK
Sbjct  2041  KADK  2044

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RNA-dependent RNA polymerase [Human respiratory syncytial virus B]

Sequence ID: WXH84863.1Length: 2167Number of Matches: 1

Range 1: 1 to 2166GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
3969 bits(10293)	0.0()	Compositional matrix adjust.	1944/2167(90%)	2034/2167(93%)	3/2167(0%)

Query  1     MDPIINGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDYTNLISRQNPLIEHMN  60
             MDPIING+SANVYLTDSYLKGVISFSECNALGSY+FNGPYLKNDYTNLISRQ+PLIEHMN
Sbjct  1     MDPIINGSSANVYLTDSYLKGVISFSECNALGSYLFNGPYLKNDYTNLISRQSPLIEHMN  60

Query  61    LKKLNITQSLISKYHKGEIKLEEPTYFQSLLMTYKSMTSSEQIATTNLLKKIIRRAIEIS  120
             LKKL ITQSLIS+YHKGE+KLEEPTYFQSLLMTYKSM+SS                    
Sbjct  61    LKKLTITQSLISRYHKGELKLEEPTYFQSLLMTYKSMSSSXXXXXXXXXXXXXXXXXXXX  120

Query  121   DVKVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDILSAVKDNQSHLKADKNHSTK  180
                        GLKEKD++K NN   ++NSV+TTIIKDDILSAV++NQS+  +DKN+S  
Sbjct  121   XXXXXXXXXXXGLKEKDRVKPNNNSGDENSVLTTIIKDDILSAVENNQSYTNSDKNYSVN  180

Query  181   QKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNNILTQYRSNEVKNHGFTLIDNQTLS  240
             Q   IKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNNILTQYRSNEVK+HGF LIDNQTLS
Sbjct  181   QNINIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNNILTQYRSNEVKSHGFILIDNQTLS  240

Query  241   GFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLG  300
             GFQFILNQYGCIVYHK LK+IT TTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLG
Sbjct  241   GFQFILNQYGCIVYHKGLKKITTTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLG  300

Query  301   LRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSM  360
             LRCGFNNV+L+QLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSM
Sbjct  301   LRCGFNNVVLSQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSM  360

Query  361   LNNITDAANKAQKNLLSRVCHTLLDKTVSDNIINGRWIILLSKFLKLIKLAGDNNLNNLS  420
             LNN   AA K           TLLDKTVSDNIING+WIILLSKFLKLIKLAGDNNLNNLS
Sbjct  361   LNNXXXAAIKXXXXXXXXXXXTLLDKTVSDNIINGKWIILLSKFLKLIKLAGDNNLNNLS  420

Query  421   ELYFLFRIFGHPMVDERQAMDAVKINCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRW  480
             ELYFLFRIFGHPMVDERQAMDAV+INCNETKFYLLSSLS LRGAFIYRIIKGFVN YNRW
Sbjct  421   ELYFLFRIFGHPMVDERQAMDAVRINCNETKFYLLSSLSTLRGAFIYRIIKGFVNTYNRW  480

Query  481   PTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDK  540
             PTLRNAIVLPLRWL YYKLNTYPSLLE+TE DLI+LSGLRFYREF LPKKVDLEMIINDK
Sbjct  481   PTLRNAIVLPLRWLNYYKLNTYPSLLEITENDLIILSGLRFYREFHLPKKVDLEMIINDK  540

Query  541   AISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSESDKSRRVLEYYLRDNKFNECDLYNC  600
             AISPPK+LIWTSFPRNYMPSHIQNYIEHE+LKFSESD+SRRVLEYYLRDNKFNECDLYNC
Sbjct  541   AISPPKDLIWTSFPRNYMPSHIQNYIEHERLKFSESDRSRRVLEYYLRDNKFNECDLYNC  600

Query  601   VVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLT  660
             VVNQSYLNN NHVVSLTGKERELSVGRMFAMQPGMFRQ+QILAEKMIAENILQFFPESLT
Sbjct  601   VVNQSYLNNSNHVVSLTGKERELSVGRMFAMQPGMFRQIQILAEKMIAENILQFFPESLT  660

Query  661   RYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVL  720
             RYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSC+CSDVL
Sbjct  661   RYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCVCSDVL  720

Query  721   DELHGVQSLFSWLHLTIPHVTIICTYRHAPPYIGDHIVDLNNVDEQSGLYRYHMGGIEGW  780
             DELHGVQSLFSWLHLTIP VTIICTYRHAPP+I DH+V+LN VDEQSGLYRYHMGGIEGW
Sbjct  721   DELHGVQSLFSWLHLTIPLVTIICTYRHAPPFIKDHVVNLNEVDEQSGLYRYHMGGIEGW  780

Query  781   CQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKPIRLMEGQTHAQADYLLALNS  840
             CQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKP+RL+EGQTHAQADYLLALNS
Sbjct  781   CQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKPVRLIEGQTHAQADYLLALNS  840

Query  841   LKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD  900
             LKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD
Sbjct  841   LKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD  900

Query  901   FKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLK  960
             FKVSLESIGSLTQELEYRGESLLCSLIFRN+WLYNQIALQL+NHALCNNKLYLDILKVLK
Sbjct  901   FKVSLESIGSLTQELEYRGESLLCSLIFRNIWLYNQIALQLRNHALCNNKLYLDILKVLK  960

Query  961   HLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYT  1020
             HLKTFFNLD+IDTAL+LYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVF+LSYYT
Sbjct  961   HLKTFFNLDSIDTALSLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFVLSYYT  1020

Query  1021  NHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLA  1080
              HDL+DKLQDL DDRLNKFLTC+ITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLA
Sbjct  1021  GHDLQDKLQDLPDDRLNKFLTCVITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLA  1080

Query  1081  VTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNL  1140
             VTEVLS APNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNL
Sbjct  1081  VTEVLSIAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNL  1140

Query  1141  ISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSIT  1200
             ISGTKSI ++      ID TDI+RAT+MMRKNITLLIRILPLDCN+DKRE+LS+ENLSIT
Sbjct  1141  ISGTKSIADVFSSILVIDTTDINRATDMMRKNITLLIRILPLDCNKDKRELLSLENLSIT  1200

Query  1201  ELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTISSGIIIEKYNVNSLTRGERGPTK  1260
             ELSKYVRERSWSLSNIVGVTSPSIM+TMDIKYTTSTI+SGIIIEKYNVN LTRGERGPTK
Sbjct  1201  ELSKYVRERSWSLSNIVGVTSPSIMFTMDIKYTTSTIASGIIIEKYNVNGLTRGERGPTK  1260

Query  1261  PWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLT  1320
             PWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELS GTLGL+
Sbjct  1261  PWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSTGTLGLS  1320

Query  1321  YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDED  1380
             YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPIN +LTEKYGDED
Sbjct  1321  YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINHVLTEKYGDED  1380

Query  1381  IDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVI  1440
             IDIVFQNCISFGLSLMSVVEQFTN+CPNRIILIPKLNEIHLMKPPIFTGDVDI KLKQVI
Sbjct  1381  IDIVFQNCISFGLSLMSVVEQFTNICPNRIILIPKLNEIHLMKPPIFTGDVDIIKLKQVI  1440

Query  1441  QKQHMFLPDKISLTQYVELFLSNKTLKSGSHVNSNLILAHKISDYFHNTYILSTNLAGHW  1500
             QKQHMFLPDKISLTQYVELFLSNK LKSGSH+NSNLILAHK+SDYFHN YILSTNLAGHW
Sbjct  1441  QKQHMFLPDKISLTQYVELFLSNKALKSGSHINSNLILAHKMSDYFHNAYILSTNLAGHW  1500

Query  1501  ILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYGKAKLECDMNT  1560
             ILIIQLMKDSKGIFEKDWGEGYITDHMFINL VFFNAYKTYLLCFH+GYGKAKLECDMNT
Sbjct  1501  ILIIQLMKDSKGIFEKDWGEGYITDHMFINLNVFFNAYKTYLLCFHRGYGKAKLECDMNT  1560

Query  1561  SDLLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEF  1620
             SDLLCVLELIDSSYWKSMSKVFLEQKVIKYI++QD SLHR+KGCHSFKLWFLKRLN A+F
Sbjct  1561  SDLLCVLELIDSSYWKSMSKVFLEQKVIKYIVNQDTSLHRIKGCHSFKLWFLKRLNNAKF  1620

Query  1621  TVCPWVVNIDYHPTHMKAILTYIDLVRMGLINIDRIHIKNKHKFNDEFYTSNLFYINYNF  1680
             TVCPWVVNIDYHPTHMKAIL+YIDLVRMGLIN+D++ IKNK+KFNDEFYTSNLFYI+YNF
Sbjct  1621  TVCPWVVNIDYHPTHMKAILSYIDLVRMGLINVDKLTIKNKNKFNDEFYTSNLFYISYNF  1680

Query  1681  SDNTHLLTKHIRIANSELENNYNKLYHPTP-ETLENILANPIKSNDKKTLNDYCIGKNVD  1739
             SDNTHLLTK IRIANSELE+NYNKLYHPT   T+   L    KSN++     +CI ++ +
Sbjct  1681  SDNTHLLTKQIRIANSELEDNYNKLYHPTQGHTVNLALLXXXKSNNRNK-PKFCISRSTE  1739

Query  1740  SIMLPLLSNKKLIKSSAM-IRTNYSKQDLYNLFPMVVIDRIIDHSGNTAKSNQLYTTTSH  1798
             S+M    SNK  IKSS +  + NYS+QDLYNLFP+VVIDRIIDHSGNT KSNQLYTTTSH
Sbjct  1740  SMMTSTFSNKMHIKSSTVTTKFNYSRQDLYNLFPIVVIDRIIDHSGNTEKSNQLYTTTSH  1799

Query  1799  QISLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGN  1858
             Q SLV NS SLYCMLPWHH+NRFNFVFSSTGCKISIEYILKDLKIKDP+CIAFIGEGAGN
Sbjct  1800  QTSLVRNSASLYCMLPWHHVNRFNFVFSSTGCKISIEYILKDLKIKDPSCIAFIGEGAGN  1859

Query  1859  LLLRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIH  1918
             LLLRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIH
Sbjct  1860  LLLRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIH  1919

Query  1919  WSYLHIKFAEPISLFVCDAELSVTVNWSKIIIEWSKHVRKCKYCSSVNKCMLIVKYHAQD  1978
             WSYLHIKFAEPIS+FVCDAEL VT NWSKIIIEWSKHVRKCKYCSSVN+C+LIVKYHAQD
Sbjct  1920  WSYLHIKFAEPISIFVCDAELPVTANWSKIIIEWSKHVRKCKYCSSVNRCILIVKYHAQD  1979

Query  1979  DIDFKLDNITILKTYVCLGSKLKGSEVYLVLTIGPANIFPVFNVVQNAKLILSRTKNFIM  2038
             DIDFKLDNITILKTYVCLGSKLKGSEVYLVLTIGPANI PVF+VVQNAKLILSRTKNFIM
Sbjct  1980  DIDFKLDNITILKTYVCLGSKLKGSEVYLVLTIGPANILPVFDVVQNAKLILSRTKNFIM  2039

Query  2039  PKKADKESIDANIKSLIPFLCYPITKKGINTALSKLKSVVSGDILSYSIAGRNEVFSNKL  2098
             PKK DKESIDANIKSLIPFLCYPITK GI T+LSKLKSVV+GDILSYSIAGRNEVFSNKL
Sbjct  2040  PKKIDKESIDANIKSLIPFLCYPITKNGIKTSLSKLKSVVNGDILSYSIAGRNEVFSNKL  2099

Query  2099  INHKHMNILKWFNHVLNFRSTELNYNHLYMVESTYPYLSELLNSLTTNELKKLIKITGSL  2158
             INHKHMNILKW +HVLNFRS ELNYNHLYM+ESTYPYLSELLNSLTTNELKKLIKITGS+
Sbjct  2100  INHKHMNILKWLDHVLNFRSAELNYNHLYMIESTYPYLSELLNSLTTNELKKLIKITGSV  2159

Query  2159  LYNFHNE  2165
             LYN  NE
Sbjct  2160  LYNLPNE  2166

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L polymerase [Respiratory syncytial virus type A]

Sequence ID: AHW81152.1Length: 2165Number of Matches: 2

Range 1: 253 to 2165GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
3905 bits(10127)	0.0()	Compositional matrix adjust.	1895/1913(99%)	1904/1913(99%)	0/1913(0%)

Query  253   VYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLGLRCGFNNVILTQ  312
             VYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLGLRCGFNNVILTQ
Sbjct  253   VYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLGLRCGFNNVILTQ  312

Query  313   LFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSMLNNITDAANKAQ  372
             LFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSMLNNITDAANKAQ
Sbjct  313   LFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSMLNNITDAANKAQ  372

Query  373   KNLLSRVCHTLLDKTVSDNIINGRWIILLSKFLKLIKLAGDNNLNNLSELYFLFRIFGHP  432
             KNLLSRVCHTLLDKTVSDNIINGRWIILLSKFLKLIKLAGDNNLNNLSELYFLFRIFGHP
Sbjct  373   KNLLSRVCHTLLDKTVSDNIINGRWIILLSKFLKLIKLAGDNNLNNLSELYFLFRIFGHP  432

Query  433   MVDERQAMDAVKINCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRWPTLRNAIVLPLR  492
             MVDERQAMDAVK+NCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRWPTLRNAIVLPLR
Sbjct  433   MVDERQAMDAVKVNCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRWPTLRNAIVLPLR  492

Query  493   WLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDKAISPPKNLIWTS  552
             WLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDKAISPPKNLIWTS
Sbjct  493   WLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDKAISPPKNLIWTS  552

Query  553   FPRNYMPSHIQNYIEHEKLKFSESDKSRRVLEYYLRDNKFNECDLYNCVVNQSYLNNPNH  612
             FPRNYMPSHIQNYIEHEKLKFSESDKSRRVLEYYLRDNKFNECDLYNCVVNQSYLNNPNH
Sbjct  553   FPRNYMPSHIQNYIEHEKLKFSESDKSRRVLEYYLRDNKFNECDLYNCVVNQSYLNNPNH  612

Query  613   VVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLTRYGDLELQKILE  672
             VVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLTRYGDLELQKILE
Sbjct  613   VVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLTRYGDLELQKILE  672

Query  673   LKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVLDELHGVQSLFSW  732
             LKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVLDELHGVQSLFSW
Sbjct  673   LKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVLDELHGVQSLFSW  732

Query  733   LHLTIPHVTIICTYRHAPPYIGDHIVDLNNVDEQSGLYRYHMGGIEGWCQKLWTIEAISL  792
             LHLTIPHVTIICTYRHAPPYI DHIVDLNNVDEQSGLYRYHMGGIEGWCQKLWTIEAISL
Sbjct  733   LHLTIPHVTIICTYRHAPPYIRDHIVDLNNVDEQSGLYRYHMGGIEGWCQKLWTIEAISL  792

Query  793   LDLISLKGKFSITALINGDNQSIDISKPIRLMEGQTHAQADYLLALNSLKLLYKEYAGIG  852
             LDLISLKGKFSITALINGDNQSIDISKP+RLMEGQTHAQADYLLALNSLKLLYKEYAGIG
Sbjct  793   LDLISLKGKFSITALINGDNQSIDISKPVRLMEGQTHAQADYLLALNSLKLLYKEYAGIG  852

Query  853   HKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDDFKVSLESIGSLT  912
             HKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDDFKVSLESIGSLT
Sbjct  853   HKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDDFKVSLESIGSLT  912

Query  913   QELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLKHLKTFFNLDNID  972
             QELEYRGESLLCSLIFRNVWLYNQIALQLK HALCNNKLYLDILKVLKHLKTFFNLDNID
Sbjct  913   QELEYRGESLLCSLIFRNVWLYNQIALQLKKHALCNNKLYLDILKVLKHLKTFFNLDNID  972

Query  973   TALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYTNHDLKDKLQDLS  1032
             TALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYTNHDLKDKLQDLS
Sbjct  973   TALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYTNHDLKDKLQDLS  1032

Query  1033  DDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLAVTEVLSTAPNKI  1092
             DDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLAVTEVLSTAPNKI
Sbjct  1033  DDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLAVTEVLSTAPNKI  1092

Query  1093  FSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNLISGTKSITNILE  1152
             FSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNLISGTKSITNILE
Sbjct  1093  FSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNLISGTKSITNILE  1152

Query  1153  KTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSITELSKYVRERSWS  1212
             KTSAIDLTDIDRATEMMRKNITLLIRI PLDCNRDKREILSMENLSITELSKYVRERSWS
Sbjct  1153  KTSAIDLTDIDRATEMMRKNITLLIRIFPLDCNRDKREILSMENLSITELSKYVRERSWS  1212

Query  1213  LSNIVGVTSPSIMYTMDIKYTTSTISSGIIIEKYNVNSLTRGERGPTKPWVGSSTQEKKT  1272
             LSNIVGVTSPSIMYTMDIKYTTSTI+SGIIIEKYNVNSLTRGERGPTKPWVGSSTQEKKT
Sbjct  1213  LSNIVGVTSPSIMYTMDIKYTTSTIASGIIIEKYNVNSLTRGERGPTKPWVGSSTQEKKT  1272

Query  1273  MPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLTYEKAKKLFPQYL  1332
             MPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLTYEKAKKLFPQYL
Sbjct  1273  MPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLTYEKAKKLFPQYL  1332

Query  1333  SVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDEDIDIVFQNCISFG  1392
             SVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDEDIDIVFQNCISFG
Sbjct  1333  SVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDEDIDIVFQNCISFG  1392

Query  1393  LSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVIQKQHMFLPDKIS  1452
             LSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVIQKQHMFLPDKIS
Sbjct  1393  LSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVIQKQHMFLPDKIS  1452

Query  1453  LTQYVELFLSNKTLKSGSHVNSNLILAHKISDYFHNTYILSTNLAGHWILIIQLMKDSKG  1512
             LTQYVELFLSNKTLKSGSHVNSNLILAHKISDYFHNTYILSTNLAGHWILIIQLMKDSKG
Sbjct  1453  LTQYVELFLSNKTLKSGSHVNSNLILAHKISDYFHNTYILSTNLAGHWILIIQLMKDSKG  1512

Query  1513  IFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYGKAKLECDMNTSDLLCVLELIDS  1572
             IFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYG+AKLECDMNTSDLLCVLELIDS
Sbjct  1513  IFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYGRAKLECDMNTSDLLCVLELIDS  1572

Query  1573  SYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEFTVCPWVVNIDYH  1632
             SYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEFTVCPWVVNIDYH
Sbjct  1573  SYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEFTVCPWVVNIDYH  1632

Query  1633  PTHMKAILTYIDLVRMGLINIDRIHIKNKHKFNDEFYTSNLFYINYNFSDNTHLLTKHIR  1692
             PTHMKAILTYIDLVRMGLINIDRI+IKNKHKFNDEFYTSNLFYINYNFSDNTHLLTKHIR
Sbjct  1633  PTHMKAILTYIDLVRMGLINIDRIYIKNKHKFNDEFYTSNLFYINYNFSDNTHLLTKHIR  1692

Query  1693  IANSELENNYNKLYHPTPETLENILANPIKSNDKKTLNDYCIGKNVDSIMLPLLSNKKLI  1752
             IANSELENNYNKLYHPTPETLENIL NP+K +DKKTLNDYCIGKNVDSIMLPLLSNKKLI
Sbjct  1693  IANSELENNYNKLYHPTPETLENILTNPVKCDDKKTLNDYCIGKNVDSIMLPLLSNKKLI  1752

Query  1753  KSSAMIRTNYSKQDLYNLFPMVVIDRIIDHSGNTAKSNQLYTTTSHQISLVHNSTSLYCM  1812
             KSS MIRTNYSKQDLYNLFP VVID+IIDHSGNTAKSNQLYTTTSHQISLVHNSTSLYCM
Sbjct  1753  KSSTMIRTNYSKQDLYNLFPTVVIDKIIDHSGNTAKSNQLYTTTSHQISLVHNSTSLYCM  1812

Query  1813  LPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLLLRTVVELHPDIR  1872
             LPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLLLRTVVELHPDIR
Sbjct  1813  LPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLLLRTVVELHPDIR  1872

Query  1873  YIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWSYLHIKFAEPISL  1932
             YIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWSYLHIKFAEPISL
Sbjct  1873  YIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWSYLHIKFAEPISL  1932

Query  1933  FVCDAELSVTVNWSKIIIEWSKHVRKCKYCSSVNKCMLIVKYHAQDDIDFKLDNITILKT  1992
             FVCDAEL VTVNWSKIIIEWSKHVRKCKYCSSVNKC LIVKYHAQDDIDFKLDNITILKT
Sbjct  1933  FVCDAELPVTVNWSKIIIEWSKHVRKCKYCSSVNKCTLIVKYHAQDDIDFKLDNITILKT  1992

Query  1993  YVCLGSKLKGSEVYLVLTIGPANIFPVFNVVQNAKLILSRTKNFIMPKKADKESIDANIK  2052
             YVCLGSKLKGSEVYLVLTIGPAN+FPVFNVVQNAKLILSRTKNFIMPKKADKESIDANIK
Sbjct  1993  YVCLGSKLKGSEVYLVLTIGPANVFPVFNVVQNAKLILSRTKNFIMPKKADKESIDANIK  2052

Query  2053  SLIPFLCYPITKKGINTALSKLKSVVSGDILSYSIAGRNEVFSNKLINHKHMNILKWFNH  2112
             SLIPFLCYPITKKGINTALSKLKSVVSGDILSYSIAGRNEVFSNKLINHKHMNILKWFNH
Sbjct  2053  SLIPFLCYPITKKGINTALSKLKSVVSGDILSYSIAGRNEVFSNKLINHKHMNILKWFNH  2112

Query  2113  VLNFRSTELNYNHLYMVESTYPYLSELLNSLTTNELKKLIKITGSLLYNFHNE  2165
             VLNFRSTELNYNHLYMVESTYPYLSELLNSLTTNELKKLIKITGSLLYNFHNE
Sbjct  2113  VLNFRSTELNYNHLYMVESTYPYLSELLNSLTTNELKKLIKITGSLLYNFHNE  2165

Range 2: 1 to 47GenPept Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score	Expect	Method	Identities	Positives	Gaps	Frame
102 bits(254)	3e-17()	Compositional matrix adjust.	47/47(100%)	47/47(100%)	0/47(0%)

Query  1   MDPIINGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDYTN  47
           MDPIINGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDYTN
Sbjct  1   MDPIINGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDYTN  47

Download GenPept Graphics Next Previous Descriptions

putative RNA-directed RNA polymerase L, partial [human respiratory syncytial virus]

Sequence ID: AHA83633.1Length: 1909Number of Matches: 1

Range 1: 1 to 1909GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
3884 bits(10072)	0.0()	Compositional matrix adjust.	1881/1909(99%)	1896/1909(99%)	0/1909(0%)

Query  63    KLNITQSLISKYHKGEIKLEEPTYFQSLLMTYKSMTSSEQIATTNLLKKIIRRAIEISDV  122
             KLNITQSLISKYHKGEIK+EEPTYFQSLLMTYKSMTSSEQ  TTNLLKKIIRRAIEISDV
Sbjct  1     KLNITQSLISKYHKGEIKIEEPTYFQSLLMTYKSMTSSEQTTTTNLLKKIIRRAIEISDV  60

Query  123   KVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDILSAVKDNQSHLKADKNHSTKQK  182
             KVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDIL AVKDNQSHLKADKN STKQK
Sbjct  61    KVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDILLAVKDNQSHLKADKNQSTKQK  120

Query  183   DTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNNILTQYRSNEVKNHGFTLIDNQTLSGF  242
             DTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLN+ILTQYRS+EVKNHGF LIDN TLSGF
Sbjct  121   DTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNSILTQYRSSEVKNHGFILIDNHTLSGF  180

Query  243   QFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLGLR  302
             QFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLGLR
Sbjct  181   QFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLGLR  240

Query  303   CGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSMLN  362
             CGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSMLN
Sbjct  241   CGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSMLN  300

Query  363   NITDAANKAQKNLLSRVCHTLLDKTVSDNIINGRWIILLSKFLKLIKLAGDNNLNNLSEL  422
             NITDAANKAQKNLLSRVCHTLLDKT+SDNIINGRWIILLSKFLKLIKLAGDNNLNNLSEL
Sbjct  301   NITDAANKAQKNLLSRVCHTLLDKTISDNIINGRWIILLSKFLKLIKLAGDNNLNNLSEL  360

Query  423   YFLFRIFGHPMVDERQAMDAVKINCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRWPT  482
             YFLFRIFGHPMVDERQAMDAVK+NCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRWPT
Sbjct  361   YFLFRIFGHPMVDERQAMDAVKVNCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRWPT  420

Query  483   LRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDKAI  542
             LRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDKAI
Sbjct  421   LRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDKAI  480

Query  543   SPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSESDKSRRVLEYYLRDNKFNECDLYNCVV  602
             SPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFS+SDKSRRVLEYYLRDNKFNECDLYNCVV
Sbjct  481   SPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSDSDKSRRVLEYYLRDNKFNECDLYNCVV  540

Query  603   NQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLTRY  662
             NQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLTRY
Sbjct  541   NQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLTRY  600

Query  663   GDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVLDE  722
             GDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVLDE
Sbjct  601   GDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVLDE  660

Query  723   LHGVQSLFSWLHLTIPHVTIICTYRHAPPYIGDHIVDLNNVDEQSGLYRYHMGGIEGWCQ  782
             LHGVQSLFSWLHLTIPHVTIICTYRHAPPYI DHIVDLNNVDEQSGLYRYHMGGIEGWCQ
Sbjct  661   LHGVQSLFSWLHLTIPHVTIICTYRHAPPYIKDHIVDLNNVDEQSGLYRYHMGGIEGWCQ  720

Query  783   KLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKPIRLMEGQTHAQADYLLALNSLK  842
             KLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKP+RLMEGQTHAQADYLLALNSLK
Sbjct  721   KLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKPVRLMEGQTHAQADYLLALNSLK  780

Query  843   LLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDDFK  902
             LLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDDFK
Sbjct  781   LLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDDFK  840

Query  903   VSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLKHL  962
             VSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLKHL
Sbjct  841   VSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLKHL  900

Query  963   KTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYTNH  1022
             KTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYTNH
Sbjct  901   KTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYTNH  960

Query  1023  DLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLAVT  1082
             DLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLAVT
Sbjct  961   DLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLAVT  1020

Query  1083  EVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNLIS  1142
             EVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNLIS
Sbjct  1021  EVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNLIS  1080

Query  1143  GTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSITEL  1202
             GTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSITEL
Sbjct  1081  GTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSITEL  1140

Query  1203  SKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTISSGIIIEKYNVNSLTRGERGPTKPW  1262
             SKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTI+SGIIIEKYNVNSLTRGERGPTKPW
Sbjct  1141  SKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTIASGIIIEKYNVNSLTRGERGPTKPW  1200

Query  1263  VGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLTYE  1322
             VGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLTYE
Sbjct  1201  VGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLTYE  1260

Query  1323  KAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDEDID  1382
             KAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDEDID
Sbjct  1261  KAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDEDID  1320

Query  1383  IVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVIQK  1442
             IVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVIQK
Sbjct  1321  IVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVIQK  1380

Query  1443  QHMFLPDKISLTQYVELFLSNKTLKSGSHVNSNLILAHKISDYFHNTYILSTNLAGHWIL  1502
             QHMFLPDKISLTQYVELFLSNKTLKSGS+VNSNLILAHKISDYFHNTYILSTNLAGHWIL
Sbjct  1381  QHMFLPDKISLTQYVELFLSNKTLKSGSNVNSNLILAHKISDYFHNTYILSTNLAGHWIL  1440

Query  1503  IIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYGKAKLECDMNTSD  1562
             IIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYG+AKLECDMNTSD
Sbjct  1441  IIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYGRAKLECDMNTSD  1500

Query  1563  LLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEFTV  1622
             LLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEFTV
Sbjct  1501  LLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEFTV  1560

Query  1623  CPWVVNIDYHPTHMKAILTYIDLVRMGLINIDRIHIKNKHKFNDEFYTSNLFYINYNFSD  1682
             CPWVVNIDYHPTHMKAILTYIDLVRMGLINIDRI+IKNKHKFNDEFYTSNLFYINYNFSD
Sbjct  1561  CPWVVNIDYHPTHMKAILTYIDLVRMGLINIDRIYIKNKHKFNDEFYTSNLFYINYNFSD  1620

Query  1683  NTHLLTKHIRIANSELENNYNKLYHPTPETLENILANPIKSNDKKTLNDYCIGKNVDSIM  1742
             NTHLLTKHIRIANSELE+NYNKLYHPTPETLENIL NP+KSNDKKTL+DYCIGKNVDSIM
Sbjct  1621  NTHLLTKHIRIANSELESNYNKLYHPTPETLENILTNPVKSNDKKTLSDYCIGKNVDSIM  1680

Query  1743  LPLLSNKKLIKSSAMIRTNYSKQDLYNLFPMVVIDRIIDHSGNTAKSNQLYTTTSHQISL  1802
             LP LSNKKLIKSS MIRTNYS+QDLYNLFP VVIDRIIDHSGNTAKSNQLYTTTSHQISL
Sbjct  1681  LPSLSNKKLIKSSTMIRTNYSRQDLYNLFPTVVIDRIIDHSGNTAKSNQLYTTTSHQISL  1740

Query  1803  VHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLLLR  1862
             VHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLLLR
Sbjct  1741  VHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLLLR  1800

Query  1863  TVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWSYL  1922
             TVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWSYL
Sbjct  1801  TVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWSYL  1860

Query  1923  HIKFAEPISLFVCDAELSVTVNWSKIIIEWSKHVRKCKYCSSVNKCMLI  1971
             HIKFAEPISLFVCDAEL VTVNWSKIIIEWSKHVRKCKYCSSVNKC LI
Sbjct  1861  HIKFAEPISLFVCDAELPVTVNWSKIIIEWSKHVRKCKYCSSVNKCTLI  1909

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large polymerase [Human respiratory syncytial virus A]

Sequence ID: WAO97858.1Length: 2165Number of Matches: 1

Range 1: 1 to 2165GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
3825 bits(9919)	0.0()	Compositional matrix adjust.	1908/2165(88%)	1937/2165(89%)	0/2165(0%)

Query  1     MDPIINGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDYTNLISRQNPLIEHMN  60
             MDPII+GNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDYTNLISRQNPLIEH+N
Sbjct  1     MDPIISGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDYTNLISRQNPLIEHIN  60

Query  61    LKKLNITQSLISKYHKGEIKLEEPTYFQSLLMTYKSMTSSEQIATTNLLKKIIRRAIEIS  120
             LKKLNITQSLISKYHKGEIK+EEPTYFQSLLMTYKSMTSSEQ  TTNLLKKIIRRAIEIS
Sbjct  61    LKKLNITQSLISKYHKGEIKIEEPTYFQSLLMTYKSMTSSEQTTTTNLLKKIIRRAIEIS  120

Query  121   DVKVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDILSAVKDNQSHLKADKNHSTK  180
             DVKVYAILNKLGLKEKDKIKSN+GQDEDNSVITTIIKDDIL AVKDNQSHLKADKN S+K
Sbjct  121   DVKVYAILNKLGLKEKDKIKSNDGQDEDNSVITTIIKDDILLAVKDNQSHLKADKNQSSK  180

Query  181   QKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNNILTQYRSNEVKNHGFTLIDNQTLS  240
             QKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLN+ILTQYRS+EVKNHGF LIDN TLS
Sbjct  181   QKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNSILTQYRSSEVKNHGFILIDNHTLS  240

Query  241   GFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLG  300
             GFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLG
Sbjct  241   GFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLG  300

Query  301   LRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSM  360
             LRCGFNNVIL               NEGFY    VEGFIMSLILNITEEDQFRKRFYNSM
Sbjct  301   LRCGFNNVILXXXXXXXXXXXXXXXNEGFYXXXXVEGFIMSLILNITEEDQFRKRFYNSM  360

Query  361   LNNITDAANKAQKNLLSRVCHTLLDKTVSDNIINGRWIILLSKFLKLIKLAGDNNLNNLS  420
             LNNITDAANKAQKNLLSRVCHTLLDKT+SDNIINGRWIILLSKFLKLIKLAGDNNLNNLS
Sbjct  361   LNNITDAANKAQKNLLSRVCHTLLDKTISDNIINGRWIILLSKFLKLIKLAGDNNLNNLS  420

Query  421   ELYFLFRIFGHPMVDERQAMDAVKINCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRW  480
             ELYFLFRIFGHPM       DA      ETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRW
Sbjct  421   ELYFLFRIFGHPMXXXXXXXDAXXXXXXETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRW  480

Query  481   PTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDK  540
             PTLRNAIVLPLRWLTYYKLN                      REFRLPKKVDLEMIINDK
Sbjct  481   PTLRNAIVLPLRWLTYYKLNXXXXXXXXXXXXXXXXXXXXXXREFRLPKKVDLEMIINDK  540

Query  541   AISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSESDKSRRVLEYYLRDNKFNECDLYNC  600
             AISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFS+SDKS  VLEYYLRDNKFNECDL+ C
Sbjct  541   AISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSDSDKSXXVLEYYLRDNKFNECDLHTC  600

Query  601   VVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLT  660
             VVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLT
Sbjct  601   VVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLT  660

Query  661   RYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVL  720
             RYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVL
Sbjct  661   RYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVL  720

Query  721   DELHGVQSLFSWLHLTIPHVTIICTYRHAPPYIGDHIVDLNNVDEQSGLYRYHMGGIEGW  780
             DELHGVQSLFSWLHLTIP                 HIVDLNNVDEQSGLYRYHMGGIEGW
Sbjct  721   DELHGVQSLFSWLHLTIPXXXXXXXXXXXXXXXXXHIVDLNNVDEQSGLYRYHMGGIEGW  780

Query  781   CQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKPIRLMEGQTHAQADYLLALNS  840
             CQKLWTIEAISLLDLISLKGKFSITALINGDNQ         L+EGQT            
Sbjct  781   CQKLWTIEAISLLDLISLKGKFSITALINGDNQXXXXXXXXXLIEGQTXXXXXXXXXXXX  840

Query  841   LKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD  900
                                       QFM              IKKVLRVGPWINTILDD
Sbjct  841   XXXXXXXXXXXXXXXXXXXXXXXXXXQFMXXXXXXXXXXXXXXIKKVLRVGPWINTILDD  900

Query  901   FKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLK  960
             FKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLK
Sbjct  901   FKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLK  960

Query  961   HLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYT  1020
             HLKTFF+LDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYT
Sbjct  961   HLKTFFDLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYT  1020

Query  1021  NHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLA  1080
             NHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLA
Sbjct  1021  NHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLA  1080

Query  1081  VTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNL  1140
             VTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNL
Sbjct  1081  VTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNL  1140

Query  1141  ISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSIT  1200
             ISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSIT
Sbjct  1141  ISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSIT  1200

Query  1201  ELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTISSGIIIEKYNVNSLTRGERGPTK  1260
             ELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTI+SGIIIEKYNVN+LTRGERGPTK
Sbjct  1201  ELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTIASGIIIEKYNVNNLTRGERGPTK  1260

Query  1261  PWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLT  1320
             PWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLT
Sbjct  1261  PWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLT  1320

Query  1321  YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDED  1380
             YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDED
Sbjct  1321  YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDED  1380

Query  1381  IDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVI  1440
             IDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDI  LKQVI
Sbjct  1381  IDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIXXLKQVI  1440

Query  1441  QKQHMFLPDKISLTQYVELFLSNKTLKSGSHVNSNLILAHKISDYFHNTYILSTNLAGHW  1500
             QKQHMFLPDKISLTQYVELFLSNKTLKSGS+VNSNLILAHKISDYFHNTYILSTNLAGHW
Sbjct  1441  QKQHMFLPDKISLTQYVELFLSNKTLKSGSNVNSNLILAHKISDYFHNTYILSTNLAGHW  1500

Query  1501  ILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYGKAKLECDMNT  1560
                          FEKDWGEGYITDHM       FNAYKTYLLCFHKGYG+AKLECDMNT
Sbjct  1501  XXXXXXXXXXXXXFEKDWGEGYITDHMXXXXXXXFNAYKTYLLCFHKGYGRAKLECDMNT  1560

Query  1561  SDLLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEF  1620
             SDLLC LELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEF
Sbjct  1561  SDLLCXLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEF  1620

Query  1621  TVCPWVVNIDYHPTHMKAILTYIDLVRMGLINIDRIHIKNKHKFNDEFYTSNLFYINYNF  1680
             TVCPWVVNIDYHPTHMKAILTYIDLVRMGLIN+DRI+IKN HKFNDEFYTSNLFYINYNF
Sbjct  1621  TVCPWVVNIDYHPTHMKAILTYIDLVRMGLINVDRIYIKNNHKFNDEFYTSNLFYINYNF  1680

Query  1681  SDNTHLLTKHIRIANSELENNYNKLYHPTPETLENILANPIKSNDKKTLNDYCIGKNVDS  1740
             SDNTHLLTKHIRIANSELE+NYNKLYHPTPET   IL NP+KSN KKTL+DYCIGKNVDS
Sbjct  1681  SDNTHLLTKHIRIANSELESNYNKLYHPTPETXXXILTNPVKSNGKKTLSDYCIGKNVDS  1740

Query  1741  IMLPLLSNKKLIKSSAMIRTNYSKQDLYNLFPMVVIDRIIDHSGNTAKSNQLYTTTSHQI  1800
             IMLP L+NKKL+KSS MIRTNYS+QDLYNLFP VVID I+DHSGNTAKSNQLYT  SHQI
Sbjct  1741  IMLPSLTNKKLVKSSTMIRTNYSRQDLYNLFPTVVIDGIVDHSGNTAKSNQLYTAASHQI  1800

Query  1801  SLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLL  1860
             SLVHNSTSLYCMLPWHHINRFNFVFSSTGCKIS+EY         PNCIAFIGEGAGNLL
Sbjct  1801  SLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISVEYXXXXXXXXXPNCIAFIGEGAGNLL  1860

Query  1861  LRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWS  1920
             LRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWS
Sbjct  1861  LRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWS  1920

Query  1921  YLHIKFAEPISLFVCDAELSVTVNWSKIIIEWSKHVRKCKYCSSVNKCMLIVKYHAQDDI  1980
             YLHIKFAEPISLFVCDAEL      SKIIIEWSKHVRKCKYCSSVNKC LIVKYHAQDDI
Sbjct  1921  YLHIKFAEPISLFVCDAELPXXXXXSKIIIEWSKHVRKCKYCSSVNKCTLIVKYHAQDDI  1980

Query  1981  DFKLDNITILKTYVCLGSKLKGSEVYLVLTIGPANIFPVFNVVQNAKLILSRTKNFIMPK  2040
             DFKLDNITILKTYVCLGSKLKGSEVYLVLTIGP N+FPVFNVVQNAKLILSRT       
Sbjct  1981  DFKLDNITILKTYVCLGSKLKGSEVYLVLTIGPTNMFPVFNVVQNAKLILSRTXXXXXXX  2040

Query  2041  KADKESIDANIKSLIPFLCYPITKKGINTALSKLKSVVSGDILSYSIAGRNEVFSNKLIN  2100
                                         TALSKLKSVVSGDILSYSIAGRNEVFSNKLIN
Sbjct  2041  XXXXXXXXXXXXXXXXXXXXXXXXXXXXTALSKLKSVVSGDILSYSIAGRNEVFSNKLIN  2100

Query  2101  HKHMNILKWFNHVLNFRSTELNYNHLYMVESTYPYLSELLNSLTTNELKKLIKITGSLLY  2160
             HKHMNILKWFNHVLNFRSTELNYNHLYMVESTYP+LSELLNSLTTNELKKLIKITGSLLY
Sbjct  2101  HKHMNILKWFNHVLNFRSTELNYNHLYMVESTYPHLSELLNSLTTNELKKLIKITGSLLY  2160

Query  2161  NFHNE  2165
             NF+NE
Sbjct  2161  NFNNE  2165

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L polymerase [Respiratory syncytial virus type A]

Sequence ID: AHW81342.1Length: 2165Number of Matches: 1

Range 1: 261 to 2165GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
3801 bits(9856)	0.0()	Compositional matrix adjust.	1850/1905(97%)	1861/1905(97%)	0/1905(0%)

Query  261   ITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLGLRCGFNNVILTQLFLYGDCI  320
             ITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLGLRCGFNNVILTQLFLYGDCI
Sbjct  261   ITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLGLRCGFNNVILTQLFLYGDCI  320

Query  321   LKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSMLNNITDAANKAQKNLLSRVC  380
             LKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSMLNNITDAANKAQKNLLSRVC
Sbjct  321   LKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSMLNNITDAANKAQKNLLSRVC  380

Query  381   HTLLDKTVSDNIINGRWIILLSKFLKLIKLAGDNNLNNLSELYFLFRIFGHPMVDERQAM  440
             HTLLDKTVSDNIINGRWIILLSKFLKLIKLAGDNNLNNLSELYFLFRIFGHPMVDERQAM
Sbjct  381   HTLLDKTVSDNIINGRWIILLSKFLKLIKLAGDNNLNNLSELYFLFRIFGHPMVDERQAM  440

Query  441   DAVKINCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRWPTLRNAIVLPLRWLTYYKLN  500
             DAVK+NCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRWPTLRNAIVLPLRWLTYYKLN
Sbjct  441   DAVKVNCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRWPTLRNAIVLPLRWLTYYKLN  500

Query  501   TYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDKAISPPKNLIWTSFPRNYMPS  560
             TYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDKAISPPKNLIWTSFPRNYMPS
Sbjct  501   TYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDKAISPPKNLIWTSFPRNYMPS  560

Query  561   HIQNYIEHEKLKFSESDKSRRVLEYYLRDNKFNECDLYNCVVNQSYLNNPNHVVSLTGKE  620
             HIQNYIEHEKLKFSESDKSRRVLEYYLRDNKFNECDLY+CVVNQSYLNNPNHVVSLTGKE
Sbjct  561   HIQNYIEHEKLKFSESDKSRRVLEYYLRDNKFNECDLYHCVVNQSYLNNPNHVVSLTGKE  620

Query  621   RELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLTRYGDLELQKILELKAGISNK  680
             RELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLTRYGDLELQKILELKAGISNK
Sbjct  621   RELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLTRYGDLELQKILELKAGISNK  680

Query  681   SNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVLDELHGVQSLFSWLHLTIPHV  740
             SNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVLDELHGVQSLFSWLHLTIPHV
Sbjct  681   SNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVLDELHGVQSLFSWLHLTIPHV  740

Query  741   TIICTYRHAPPYIGDHIVDLNNVDEQSGLYRYHMGGIEGWCQKLWTIEAISLLDLISLKG  800
             TIICTYRHAPPYI DHIVDLNNVDEQSGLYRYHMGGIEGWCQKLWTIEAISLLDLISLKG
Sbjct  741   TIICTYRHAPPYIRDHIVDLNNVDEQSGLYRYHMGGIEGWCQKLWTIEAISLLDLISLKG  800

Query  801   KFSITALINGDNQSIDISKPIRLMEGQTHAQADYLLALNSLKLLYKEYAGIGHKLKGTET  860
             KFSITALINGDNQSIDISKP+RLMEGQTHAQADYLLALNSLKLLYKEYAGIGHKLKGTET
Sbjct  801   KFSITALINGDNQSIDISKPVRLMEGQTHAQADYLLALNSLKLLYKEYAGIGHKLKGTET  860

Query  861   YISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDDFKVSLESIGSLTQELEYRGE  920
             YISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDDFKVSLESIGSLTQELEYRGE
Sbjct  861   YISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDDFKVSLESIGSLTQELEYRGE  920

Query  921   SLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLKHLKTFFNLDNIDTALTLYMN  980
             SLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLKHLKTFFNLDNIDTALTLYMN
Sbjct  921   SLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLKHLKTFFNLDNIDTALTLYMN  980

Query  981   LPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYTNHDLKDKLQDLSDDRLNKFL  1040
             LPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYTNHDLKDKLQDLSDDRLNKFL
Sbjct  981   LPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYTNHDLKDKLQDLSDDRLNKFL  1040

Query  1041  TCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLAVTEVLSTAPNKIFSKSAQHY  1100
             TCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLAVTEVLSTAPNKIFSKSAQHY
Sbjct  1041  TCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLAVTEVLSTAPNKIFSKSAQHY  1100

Query  1101  TTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNLISGTKSITNILEKTSAIDLT  1160
             TTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNLISGTKSITNILEKTSAIDLT
Sbjct  1101  TTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNLISGTKSITNILEKTSAIDLT  1160

Query  1161  DIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSITELSKYVRERSWSLSNIVGVT  1220
             DIDRATEMMRKNITLLIRI PLDCNRDKREILSMENLSITELSKYVRERSWSLSNIVGVT
Sbjct  1161  DIDRATEMMRKNITLLIRIFPLDCNRDKREILSMENLSITELSKYVRERSWSLSNIVGVT  1220

Query  1221  SPSIMYTMDIKYTTSTISSGIIIEKYNVNSLTRGERGPTKPWVGSSTQEKKTMPVYNRQV  1280
             SPSIMYTMDIKYTTSTI+SGIIIEKYNVNSLTRGERGPTKPWVGSSTQEKKTMPVYNRQV
Sbjct  1221  SPSIMYTMDIKYTTSTIASGIIIEKYNVNSLTRGERGPTKPWVGSSTQEKKTMPVYNRQV  1280

Query  1281  LTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLTYEKAKKLFPQYLSVNYLHRL  1340
             LTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLTYEKAKKLFPQYLSVNYLHRL
Sbjct  1281  LTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLTYEKAKKLFPQYLSVNYLHRL  1340

Query  1341  TVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDEDIDIVFQNCISFGLSLMSVVE  1400
             TVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDEDIDIVFQNCISFGLSLMSVVE
Sbjct  1341  TVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDEDIDIVFQNCISFGLSLMSVVE  1400

Query  1401  QFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVIQKQHMFLPDKISLTQYVELF  1460
             QFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVIQKQHMFLPDKISLTQYVELF
Sbjct  1401  QFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVIQKQHMFLPDKISLTQYVELF  1460

Query  1461  LSNKTLKSGSHVNSNLILAHKISDYFHNTYILSTNLAGHWILIIQLMKDSKGIFEKDWGE  1520
             LSNKTLKSGSHVNSNLILAHK                                   DWGE
Sbjct  1461  LSNKTLKSGSHVNSNLILAHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWGE  1520

Query  1521  GYITDHMFINLKVFFNAYKTYLLCFHKGYGKAKLECDMNTSDLLCVLELIDSSYWKSMSK  1580
             GYITDHMFINLKVFFNAYKTYLLCFHKGYG+AKLECDMNTSDLLCVLELIDSSYWKSMSK
Sbjct  1521  GYITDHMFINLKVFFNAYKTYLLCFHKGYGRAKLECDMNTSDLLCVLELIDSSYWKSMSK  1580

Query  1581  VFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEFTVCPWVVNIDYHPTHMKAIL  1640
             VFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEFTVCPWVVNIDYHPTHMKAIL
Sbjct  1581  VFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEFTVCPWVVNIDYHPTHMKAIL  1640

Query  1641  TYIDLVRMGLINIDRIHIKNKHKFNDEFYTSNLFYINYNFSDNTHLLTKHIRIANSELEN  1700
             TYIDLVRMGLINIDRI+IKNKHKFNDEFYTSNLFYINYNFSDNTHLLTKHIRIANSELEN
Sbjct  1641  TYIDLVRMGLINIDRIYIKNKHKFNDEFYTSNLFYINYNFSDNTHLLTKHIRIANSELEN  1700

Query  1701  NYNKLYHPTPETLENILANPIKSNDKKTLNDYCIGKNVDSIMLPLLSNKKLIKSSAMIRT  1760
             NYNKLYHPTPETLENIL NP+K +DKKTLNDYCIGKNVDSIMLPLLSNKKLIKSS  IRT
Sbjct  1701  NYNKLYHPTPETLENILTNPVKCDDKKTLNDYCIGKNVDSIMLPLLSNKKLIKSSTTIRT  1760

Query  1761  NYSKQDLYNLFPMVVIDRIIDHSGNTAKSNQLYTTTSHQISLVHNSTSLYCMLPWHHINR  1820
             NYSKQDLYNLFP VVID+IIDHSGNTAKSNQLYTTTSHQISLVHNSTSLYCMLPWHHINR
Sbjct  1761  NYSKQDLYNLFPTVVIDKIIDHSGNTAKSNQLYTTTSHQISLVHNSTSLYCMLPWHHINR  1820

Query  1821  FNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLLLRTVVELHPDIRYIYRSLKD  1880
             FNFVFSSTGCKISIEYILKDLKIKDP+CIAFIGEGAGNLLLRTVVELHPDIRYIYRSLKD
Sbjct  1821  FNFVFSSTGCKISIEYILKDLKIKDPSCIAFIGEGAGNLLLRTVVELHPDIRYIYRSLKD  1880

Query  1881  CNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWSYLHIKFAEPISLFVCDAELS  1940
             CNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWSYLHIKFAEPISLFVCDAEL 
Sbjct  1881  CNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWSYLHIKFAEPISLFVCDAELP  1940

Query  1941  VTVNWSKIIIEWSKHVRKCKYCSSVNKCMLIVKYHAQDDIDFKLDNITILKTYVCLGSKL  2000
             VTVNWSKIIIEWSKHVRKCKYCSSVNKC LIVKYHAQDDIDFKLDNITILKTYVCLGSKL
Sbjct  1941  VTVNWSKIIIEWSKHVRKCKYCSSVNKCTLIVKYHAQDDIDFKLDNITILKTYVCLGSKL  2000

Query  2001  KGSEVYLVLTIGPANIFPVFNVVQNAKLILSRTKNFIMPKKADKESIDANIKSLIPFLCY  2060
             KGSEVYLVLTIGPAN+FPVFNVVQNAKLILSRTKNFIMPKKADKESIDANIKSLIPFLCY
Sbjct  2001  KGSEVYLVLTIGPANVFPVFNVVQNAKLILSRTKNFIMPKKADKESIDANIKSLIPFLCY  2060

Query  2061  PITKKGINTALSKLKSVVSGDILSYSIAGRNEVFSNKLINHKHMNILKWFNHVLNFRSTE  2120
             PITKKGINTALSKLKSVVSGDILSYSIAGRNEVFSNKLINHKHMNILKWFNHVLNFRSTE
Sbjct  2061  PITKKGINTALSKLKSVVSGDILSYSIAGRNEVFSNKLINHKHMNILKWFNHVLNFRSTE  2120

Query  2121  LNYNHLYMVESTYPYLSELLNSLTTNELKKLIKITGSLLYNFHNE  2165
             LNYNHLYMVESTYPYLSELLNSLTTNELKKLIKITGSLLYNFHNE
Sbjct  2121  LNYNHLYMVESTYPYLSELLNSLTTNELKKLIKITGSLLYNFHNE  2165

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RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]

Sequence ID: XQO98681.1Length: 2148Number of Matches: 1

Range 1: 219 to 2148GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
3779 bits(9801)	0.0()	Compositional matrix adjust.	1844/1930(96%)	1863/1930(96%)	0/1930(0%)

Query  219   TQYRSNEVKNHGFTLIDNQTLSGFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLS  278
             TQYRS+EVK+HGF LIDN TLSGFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLS
Sbjct  219   TQYRSSEVKDHGFILIDNHTLSGFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLS  278

Query  279   RLNVCLITWISNCLNTLNKSLGLRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGF  338
             RLNVCLITWISNCLNTLNKSLGLRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGF
Sbjct  279   RLNVCLITWISNCLNTLNKSLGLRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGF  338

Query  339   IMSLILNITEEDQFRKRFYNSMLNNITDAANKAQKNLLSRVCHTLLDKTVSDNIINGRWI  398
             IMSLILNITEEDQFRKRFYNSMLNNITDAANKAQKNLLSRVCHTLLDKT+SDNIINGRWI
Sbjct  339   IMSLILNITEEDQFRKRFYNSMLNNITDAANKAQKNLLSRVCHTLLDKTISDNIINGRWI  398

Query  399   ILLSKFLKLIKLAGDNNLNNLSELYFLFRIFGHPMVDERQAMDAVKINCNETKFYLLSSL  458
             ILLSKFLKLIKLAGDNNLNNLSELYFLFRIFGHPMVDERQAMDAVK+NCNETKFYLLSSL
Sbjct  399   ILLSKFLKLIKLAGDNNLNNLSELYFLFRIFGHPMVDERQAMDAVKVNCNETKFYLLSSL  458

Query  459   SMLRGAFIYRIIKGFVNNYNRWPTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSG  518
             SMLRGAFIYRIIKGFVNNYNRWPTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSG
Sbjct  459   SMLRGAFIYRIIKGFVNNYNRWPTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSG  518

Query  519   LRFYREFRLPKKVDLEMIINDKAISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSESDK  578
             LRFYREFRLPKKVDLEMIINDKAISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFS+SDK
Sbjct  519   LRFYREFRLPKKVDLEMIINDKAISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSDSDK  578

Query  579   SRRVLEYYLRDNKFNECDLYNCVVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQ  638
             SRRVLEYYLRDNKFNECDL+NCVVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQ
Sbjct  579   SRRVLEYYLRDNKFNECDLHNCVVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQ  638

Query  639   VQILAEKMIAENILQFFPESLTRYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSII  698
             VQILAEKMIAENILQFFPESLTRYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSII
Sbjct  639   VQILAEKMIAENILQFFPESLTRYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSII  698

Query  699   TDLSKFNQAFRYETSCICSDVLDELHGVQSLFSWLHLTIPHVTIICTYRHAPPYIGDHIV  758
             TDLSKFNQAFRYETSCICSDVLDELHGVQSLFSWLHLTIPHVTIICTYRHAPPYI DHIV
Sbjct  699   TDLSKFNQAFRYETSCICSDVLDELHGVQSLFSWLHLTIPHVTIICTYRHAPPYIKDHIV  758

Query  759   DLNNVDEQSGLYRYHMGGIEGWCQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDIS  818
             DLNNVDEQSGLYRYHMGGIEGWCQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDIS
Sbjct  759   DLNNVDEQSGLYRYHMGGIEGWCQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDIS  818

Query  819   KPIRLMEGQTHAQADYLLALNSLKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGV  878
             KP+RLMEGQTHAQADYLLALNSLKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGV
Sbjct  819   KPVRLMEGQTHAQADYLLALNSLKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGV  878

Query  879   YYPASIKKVLRVGPWINTILDDFKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIA  938
             YYPASIKKVLRVGPWINTILDDFKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIA
Sbjct  879   YYPASIKKVLRVGPWINTILDDFKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIA  938

Query  939   LQLKNHALCNNKLYLDILKVLKHLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFY  998
             LQLKNHALCNNKLYLDILKVLKHLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFY
Sbjct  939   LQLKNHALCNNKLYLDILKVLKHLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFY  998

Query  999   RRTPDFLTEAIVHSVFILSYYTNHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLM  1058
             RRTPDFLTEAIVHSVFILSYYTNHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLM
Sbjct  999   RRTPDFLTEAIVHSVFILSYYTNHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLM  1058

Query  1059  RDPQALGSERQAKITSEINRLAVTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTY  1118
             RDPQALGSERQAKITSEINRLAVTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTY
Sbjct  1059  RDPQALGSERQAKITSEINRLAVTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTY  1118

Query  1119  PHGLRVVYESLPFYKAEKIVNLISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIR  1178
             PHGLRVVYESLPFYKAEKIVNLISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIR
Sbjct  1119  PHGLRVVYESLPFYKAEKIVNLISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIR  1178

Query  1179  ILPLDCNRDKREILSMENLSITELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTIS  1238
             ILPLDCNRDKREILSMENLSITELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTI+
Sbjct  1179  ILPLDCNRDKREILSMENLSITELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTIA  1238

Query  1239  SGIIIEKYNVNSLTRGERGPTKPWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWV  1298
             SGIIIEKYNVNSLTRGERGPTKPWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWV
Sbjct  1239  SGIIIEKYNVNSLTRGERGPTKPWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWV  1298

Query  1299  YASIDNKDEFMEELSIGTLGLTYEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRT  1358
             YASIDNKDEFMEELSIGTLGLTYEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRT
Sbjct  1299  YASIDNKDEFMEELSIGTLGLTYEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRT  1358

Query  1359  TNYHFDTSPINRILTEKYGDEDIDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNE  1418
             TNYHFDTSPINRILTEKYGDEDIDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNE
Sbjct  1359  TNYHFDTSPINRILTEKYGDEDIDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNE  1418

Query  1419  IHLMKPPIFTGDVDIHKLKQVIQKQHMFLPDKISLTQYVELFLSNKTLKSGSHVNSNLIL  1478
             IHLMKPPIFTGDVDIHKLKQVIQKQHMFLPDKISLTQYVELFLSNKTLKSGS+VNSNLIL
Sbjct  1419  IHLMKPPIFTGDVDIHKLKQVIQKQHMFLPDKISLTQYVELFLSNKTLKSGSNVNSNLIL  1478

Query  1479  AHKISDYFHNTYILSTNLAGHWILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAY  1538
             AHKISDYFHNTYILSTNLAGHWILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAY
Sbjct  1479  AHKISDYFHNTYILSTNLAGHWILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAY  1538

Query  1539  KTYLLCFHKGYGKAKLECDMNTSDLLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASL  1598
             KTYLLC                  LLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASL
Sbjct  1539  KTYLLCXXXXXXXXXXXXXXXXXXLLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASL  1598

Query  1599  HRVKGCHSFKLWFLKRLNVAEFTVCPWVVNIDYHPTHMKAILTYIDLVRMGLINIDRIHI  1658
             HRVKGCHSFKLWFLKRLNVAEFTVCPWVVNIDYHPTHMKAILTYIDLVRMGLIN+DRI+I
Sbjct  1599  HRVKGCHSFKLWFLKRLNVAEFTVCPWVVNIDYHPTHMKAILTYIDLVRMGLINVDRIYI  1658

Query  1659  KNKHKFNDEFYTSNLFYINYNFSDNTHLLTKHIRIANSELENNYNKLYHPTPETLENILA  1718
             KN HKFNDEFYTSNLFYINYNFSDNTHLLTKHIRIANSELE+NYNKLYHPTPETLENIL 
Sbjct  1659  KNNHKFNDEFYTSNLFYINYNFSDNTHLLTKHIRIANSELESNYNKLYHPTPETLENILT  1718

Query  1719  NPIKSNDKKTLNDYCIGKNVDSIMLPLLSNKKLIKSSAMIRTNYSKQDLYNLFPMVVIDR  1778
             NP+KSN +KTL+DYCIGKNVDSIMLP LSNKKLIKSS MIRTNYS+QDLYNLFP VVID+
Sbjct  1719  NPVKSNGRKTLSDYCIGKNVDSIMLPSLSNKKLIKSSTMIRTNYSRQDLYNLFPTVVIDK  1778

Query  1779  IIDHSGNTAKSNQLYTTTSHQISLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYIL  1838
             IIDHSGNTAK NQLYTTTSHQISLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYIL
Sbjct  1779  IIDHSGNTAKFNQLYTTTSHQISLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYIL  1838

Query  1839  KDLKIKDPNCIAFIGEGAGNLLLRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHI  1898
             KDLKIKDPNCIAFIGEGAGNLLLRTVVELHPDIRYIYRSLKDCND               
Sbjct  1839  KDLKIKDPNCIAFIGEGAGNLLLRTVVELHPDIRYIYRSLKDCNDXXXXXXXXXXXXXXX  1898

Query  1899  NIDYGENLTIPATDATNNIHWSYLHIKFAEPISLFVCDAELSVTVNWSKIIIEWSKHVRK  1958
                                   YLHIKFAEPISLFVCDAEL VTVNWSKIIIEWSKHVRK
Sbjct  1899  XXXXXXXXXXXXXXXXXXXXXXYLHIKFAEPISLFVCDAELPVTVNWSKIIIEWSKHVRK  1958

Query  1959  CKYCSSVNKCMLIVKYHAQDDIDFKLDNITILKTYVCLGSKLKGSEVYLVLTIGPANIFP  2018
             CKYCSSVNKC LIVKYHAQDDIDFKLDNITILKTYVCLGSKLKGSEVYLVLTIGPAN+FP
Sbjct  1959  CKYCSSVNKCTLIVKYHAQDDIDFKLDNITILKTYVCLGSKLKGSEVYLVLTIGPANVFP  2018

Query  2019  VFNVVQNAKLILSRTKNFIMPKKADKESIDANIKSLIPFLCYPITKKGINTALSKLKSVV  2078
             VFNVVQNAKLILSRTKNFIMPKKADKESIDANIKSLIPFLCYPITKKGINTALSKLKSVV
Sbjct  2019  VFNVVQNAKLILSRTKNFIMPKKADKESIDANIKSLIPFLCYPITKKGINTALSKLKSVV  2078

Query  2079  SGDILSYSIAGRNEVFSNKLINHKHMNILKWFNHVLNFRSTELNYNHLYMVESTYPYLSE  2138
             SGDILSYSIAGRNEVFSNKLINHKHMNILKWFNHVLNFRSTELNYNHLYMVESTYP+LSE
Sbjct  2079  SGDILSYSIAGRNEVFSNKLINHKHMNILKWFNHVLNFRSTELNYNHLYMVESTYPHLSE  2138

Query  2139  LLNSLTTNEL  2148
             LLNSLTTNEL
Sbjct  2139  LLNSLTTNEL  2148

Download GenPept Graphics Next Previous Descriptions

Polymerase protein [bovine respiratory syncytial virus]

Sequence ID: NP_048058.1Length: 2162Number of Matches: 1

Related Information

Gene-associated gene details

Range 1: 1 to 2161GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
3765 bits(9763)	0.0()	Compositional matrix adjust.	1821/2165(84%)	1995/2165(92%)	4/2165(0%)

Query  1     MDPIINGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDYTNLISRQNPLIEHMN  60
             MD +I+ NS NVYLTDSYLKGVISFSECNALGSY+ +GPYLKNDYTN+ISRQ PLIEH+N
Sbjct  1     MDTLIHENSTNVYLTDSYLKGVISFSECNALGSYLLDGPYLKNDYTNIISRQKPLIEHIN  60

Query  61    LKKLNITQSLISKYHKGEIKLEEPTYFQSLLMTYKSMTSSEQIATTNLLKKIIRRAIEIS  120
             LKKL+I QS ++KY+KGE+ LEEPTYFQSLLMTYKS+++SE I TT L KKIIRRAIEIS
Sbjct  61    LKKLSIIQSFVTKYNKGELGLEEPTYFQSLLMTYKSLSTSELITTTTLFKKIIRRAIEIS  120

Query  121   DVKVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDILSAVKDNQSHLKADKNHSTK  180
             DVKVYAILNKLGLKEK K+   +  D+ N+ ++ I++D+ILS + DN    K   N S K
Sbjct  121   DVKVYAILNKLGLKEKGKV---DRCDDTNTTLSNIVRDNILSVISDNTPSTKKPNNSSCK  177

Query  181   QKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNNILTQYRSNEVKNHGFTLIDNQTLS  240
                 IKTT+L KL+ SM HPP+WLIHWFNLYTKLN+ILTQYR+NE +NHG+ LID +TL 
Sbjct  178   PDQPIKTTILCKLLSSMSHPPTWLIHWFNLYTKLNDILTQYRTNEARNHGYILIDTRTLG  237

Query  241   GFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLG  300
              FQFILNQYGCIVYHK+LK+IT+TTYNQFLTWKDISLSRLNVC+ITWISNCLNTLNKSLG
Sbjct  238   EFQFILNQYGCIVYHKKLKKITITTYNQFLTWKDISLSRLNVCMITWISNCLNTLNKSLG  297

Query  301   LRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSM  360
             LRC FNNV L+QLFL+GDCILKLFHNEG+YIIKEVEGFIMSLILN+TEEDQFRKRF+NSM
Sbjct  298   LRCEFNNVTLSQLFLHGDCILKLFHNEGYYIIKEVEGFIMSLILNLTEEDQFRKRFFNSM  357

Query  361   LNNITDAANKAQKNLLSRVCHTLLDKTVSDNIINGRWIILLSKFLKLIKLAGDNNLNNLS  420
             LNNITDAA +AQ++LLSR  HT+LDKT+SDNI+NG+W+ILL KFLKLIKLAG NNLNNLS
Sbjct  358   LNNITDAAARAQQDLLSRARHTILDKTISDNILNGKWLILLGKFLKLIKLAGANNLNNLS  417

Query  421   ELYFLFRIFGHPMVDERQAMDAVKINCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRW  480
             ELYFLFRIFGHPMVDERQAMDAV++NCNETKFYLLSSLSMLRGAFIYRIIKGFVN YNRW
Sbjct  418   ELYFLFRIFGHPMVDERQAMDAVRLNCNETKFYLLSSLSMLRGAFIYRIIKGFVNTYNRW  477

Query  481   PTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDK  540
             PTLRNAIVLPLRW+ YYKLNTYPSLLELTE DLI+LSGLRFYREF LPKKVDLE+IINDK
Sbjct  478   PTLRNAIVLPLRWINYYKLNTYPSLLELTEADLIILSGLRFYREFHLPKKVDLEVIINDK  537

Query  541   AISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSESDKSRRVLEYYLRDNKFNECDLYNC  600
             AISPPKNLIWTSFP+NYMPSHIQ YIEHE+LKF+ESD+SRRVLEYYLR+N+F+E DLYNC
Sbjct  538   AISPPKNLIWTSFPKNYMPSHIQIYIEHERLKFTESDRSRRVLEYYLRNNRFSESDLYNC  597

Query  601   VVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLT  660
             +VNQ YLNNPNHV+SLTGKERELSVGRMFAMQPGMFRQVQI+AEK+IAENILQFFPESLT
Sbjct  598   IVNQEYLNNPNHVISLTGKERELSVGRMFAMQPGMFRQVQIMAEKLIAENILQFFPESLT  657

Query  661   RYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVL  720
             RYGDLELQKILELKAGISNK+NR NDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVL
Sbjct  658   RYGDLELQKILELKAGISNKANRCNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVL  717

Query  721   DELHGVQSLFSWLHLTIPHVTIICTYRHAPPYIGDHIVDLNNVDEQSGLYRYHMGGIEGW  780
             DELHGVQSLFSWLHLTIP  T+ICTYRHAPPYI +HI DLN VDEQSGLYRYHMGGIEGW
Sbjct  718   DELHGVQSLFSWLHLTIPFATVICTYRHAPPYIRNHITDLNKVDEQSGLYRYHMGGIEGW  777

Query  781   CQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKPIRLMEGQTHAQADYLLALNS  840
             CQKLWTIEAISLLDLIS+KGKFSITALINGDNQSIDISKPI+L EGQTHAQADYLLAL S
Sbjct  778   CQKLWTIEAISLLDLISIKGKFSITALINGDNQSIDISKPIKLNEGQTHAQADYLLALKS  837

Query  841   LKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD  900
             LKLLYKEYA IGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD
Sbjct  838   LKLLYKEYASIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD  897

Query  901   FKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLK  960
             FKVS+ESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALC+NKLYLDILKVL 
Sbjct  898   FKVSMESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCHNKLYLDILKVLA  957

Query  961   HLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYT  1020
             HLK FFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAI HSVF+LSYYT
Sbjct  958   HLKMFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIAHSVFVLSYYT  1017

Query  1021  NHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLA  1080
              HDL+DKLQDL DD+LNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAK+TSEINRLA
Sbjct  1018  GHDLQDKLQDLPDDKLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKVTSEINRLA  1077

Query  1081  VTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNL  1140
             VTEVLS APNKIF+KSAQHYTTTE+DLND+MQ IEPTYPHGLRVVYESLPFYKAEKIVNL
Sbjct  1078  VTEVLSNAPNKIFAKSAQHYTTTEVDLNDVMQKIEPTYPHGLRVVYESLPFYKAEKIVNL  1137

Query  1141  ISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSIT  1200
             ISGTKSITNILEKTSAID TDI+RA +MMRKNITLLIRILPLD N+ K  +LS+ NLSIT
Sbjct  1138  ISGTKSITNILEKTSAIDYTDIERAIDMMRKNITLLIRILPLDYNKAKLGLLSLNNLSIT  1197

Query  1201  ELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTISSGIIIEKYNVNSLTRGERGPTK  1260
             ++SKYVRERSWSLSNIVG+TSPSI+YTMDIKYTTSTI+SGIIIEKYN N LTRGERGPTK
Sbjct  1198  DISKYVRERSWSLSNIVGITSPSILYTMDIKYTTSTITSGIIIEKYNSNFLTRGERGPTK  1257

Query  1261  PWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLT  1320
             PWVGSSTQEKKTMPVYNRQVLTKKQ+DQIDLLAKLDWVYASIDNKDEFME L +GTLGL+
Sbjct  1258  PWVGSSTQEKKTMPVYNRQVLTKKQKDQIDLLAKLDWVYASIDNKDEFMEVLCLGTLGLS  1317

Query  1321  YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDED  1380
             YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDED
Sbjct  1318  YEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDED  1377

Query  1381  IDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVI  1440
             IDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDI KL QVI
Sbjct  1378  IDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDICKLNQVI  1437

Query  1441  QKQHMFLPDKISLTQYVELFLSNKTLKSGSHVNSNLILAHKISDYFHNTYILSTNLAGHW  1500
             QKQHMFLPDKISL+QYVELFLSNKTLK+  H++SNL+L HK+SDYF + Y+LSTNLAGHW
Sbjct  1438  QKQHMFLPDKISLSQYVELFLSNKTLKNSPHISSNLVLVHKMSDYFLHKYVLSTNLAGHW  1497

Query  1501  ILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYGKAKLECDMNT  1560
             I+IIQLMKDSKGIFEKDWGEGYITDHMF++L VFF+AYKTYLLCFHKGYGKAKLECDMNT
Sbjct  1498  IMIIQLMKDSKGIFEKDWGEGYITDHMFLDLNVFFDAYKTYLLCFHKGYGKAKLECDMNT  1557

Query  1561  SDLLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEF  1620
             SDL C LELID SYWKSMSKVFLEQKV+K+I++QD+SLHRV+GCHSFKLWFLKRLN ++F
Sbjct  1558  SDLFCTLELIDISYWKSMSKVFLEQKVVKHIINQDSSLHRVRGCHSFKLWFLKRLNTSKF  1617

Query  1621  TVCPWVVNIDYHPTHMKAILTYIDLVRMGLINIDRIHIKNKHKFNDEFYTSNLFYINYNF  1680
              VCPWVVNIDYHPTHMKAILTY++L  MGL+++D+++   KHK ND FYTSNLFYINYNF
Sbjct  1618  IVCPWVVNIDYHPTHMKAILTYMELTTMGLVHVDKLYTDQKHKLNDGFYTSNLFYINYNF  1677

Query  1681  SDNTHLLTKHIRIANSELENNYNKLYHPTPETLENILANPIKSNDKKTLNDYCIGKNVDS  1740
             SDNTHLLTK IR+ANSEL +NYN LYHP+PE+LE+IL    +SN+   L DY I K   S
Sbjct  1678  SDNTHLLTKQIRVANSELIDNYNTLYHPSPESLESILKRSNQSNNVIELKDYPIDK-FQS  1736

Query  1741  IMLPLLSNKKLIKSSAMIRTNYSKQDLYNLFPMVVIDRIIDHSGNTAKSNQLYTTTSHQI  1800
                  +S+   I S+  I+  Y+ QDLYNLFP V+ID+I+DHSGN A  NQ+YT T +Q+
Sbjct  1737  PKGRGVSDITCISSNQKIKQGYNNQDLYNLFPAVIIDKIVDHSGNIANINQMYTITPNQL  1796

Query  1801  SLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLL  1860
             +L+ N TSLYCMLPWHHINRFNFVFSSTGCKIS + ILKDLKIKDP+CIAFIGEGAGNLL
Sbjct  1797  TLISNGTSLYCMLPWHHINRFNFVFSSTGCKISTKLILKDLKIKDPHCIAFIGEGAGNLL  1856

Query  1861  LRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWS  1920
             LRTVVELHPDI+YIYRSLKDCNDHSLPIEFLRLYNGHI+IDYGENLTIPATDATN IHWS
Sbjct  1857  LRTVVELHPDIKYIYRSLKDCNDHSLPIEFLRLYNGHISIDYGENLTIPATDATNAIHWS  1916

Query  1921  YLHIKFAEPISLFVCDAELSVTVNWSKIIIEWSKHVRKCKYCSSVNKCMLIVKYHAQDDI  1980
             YLHI++AEPI+LFVCDAEL    NWS+I+ EW KHVR CKYCS++++  LIVKYHAQD  
Sbjct  1917  YLHIRYAEPINLFVCDAELPDLTNWSRIVSEWYKHVRCCKYCSTIDRSKLIVKYHAQDIT  1976

Query  1981  DFKLDNITILKTYVCLGSKLKGSEVYLVLTIGPANIFPVFNVVQNAKLILSRTKNFIMPK  2040
             DFKL+NI+I+KTYVCLGSKLKGSEVYLVLT+GP+NIFP FNVVQNAKLILSRT+NF MPK
Sbjct  1977  DFKLNNISIVKTYVCLGSKLKGSEVYLVLTVGPSNIFPSFNVVQNAKLILSRTQNFPMPK  2036

Query  2041  KADKESIDANIKSLIPFLCYPITKKGINTALSKLKSVVSGDILSYSIAGRNEVFSNKLIN  2100
             K DK+S+DANIKSLIPFLCYPITKKGI  ALSKLK VV G+ILSYSIAGRNEV+SNKLIN
Sbjct  2037  KIDKDSVDANIKSLIPFLCYPITKKGIKAALSKLKDVVDGNILSYSIAGRNEVYSNKLIN  2096

Query  2101  HKHMNILKWFNHVLNFRSTELNYNHLYMVESTYPYLSELLNSLTTNELKKLIKITGSLLY  2160
             +K +NILKW +H+LNFRS E +YNHLYM+ESTYP+LSELLNSLTTNELKKLIK+TGS+LY
Sbjct  2097  YKLLNILKWLDHILNFRSLEFSYNHLYMIESTYPFLSELLNSLTTNELKKLIKVTGSVLY  2156

Query  2161  NFHNE  2165
             +  +E
Sbjct  2157  SLQHE  2161

Taxonomy

100 clusters selected
Help

Lineage

Lineage Report
Organism	Blast Name	Score	Number of Hits	Description
Orthopneumovirus	viruses		100
.Orthopneumovirus hominis	viruses		94
..human respiratory syncytial virus	viruses		13
...Human respiratory syncytial virus A	viruses	4379	54	Human respiratory syncytial virus A hits
...Human respiratory syncytial virus B	viruses	3969	25	Human respiratory syncytial virus B hits
...Respiratory syncytial virus type A	viruses	3905	2	Respiratory syncytial virus type A hits
..human respiratory syncytial virus	viruses	3884	13	human respiratory syncytial virus hits
.bovine respiratory syncytial virus	viruses	3765	1	bovine respiratory syncytial virus hits
.Respiratory syncytial virus	viruses	3691	5	Respiratory syncytial virus hits

Organism

Organism Report
Description	Score	E value	Accession
Human respiratory syncytial virus A [viruses] Next Previous First
Polymerase (L) [Human respiratory syncytial virus A]	4379	0.0	NP_044598
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	4010	0.0	XCH38232
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	4008	0.0	XCH38144
large polymerase [Human respiratory syncytial virus A]	3825	0.0	WAO97858
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3779	0.0	XQO98681
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3731	0.0	XPR31210
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3727	0.0	XQO99066
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3724	0.0	XAR00679
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3724	0.0	XQO98307
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3723	0.0	XNJ65630
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3722	0.0	XQO99022
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3684	0.0	XQO98934
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3608	0.0	XQO98198
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3520	0.0	XQO97703
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3452	0.0	XQP00948
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3430	0.0	WAK85795
polymerase, partial [Human respiratory syncytial virus A]	3382	0.0	QYW09927
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3347	0.0	XZG21031
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3346	0.0	XAR00659
large polymerase, partial [Human respiratory syncytial virus A]	3190	0.0	WAO97792
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3153	0.0	XHB17147
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3121	0.0	XLM44291
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3118	0.0	WFP22167
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3110	0.0	WKU63440
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3107	0.0	AWO12275
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	3093	0.0	WKU63490
RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	2999	0.0	XRO62962
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	2994	0.0	XAR00412
RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	2970	0.0	WXH84918
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	2912	0.0	XAR00322
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	2907	0.0	XAR00362
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	2903	0.0	XPR31123
RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	2871	0.0	XQT75251
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	2866	0.0	XPR31156
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	2855	0.0	XAR00342
RNA-directed RNA polymerase, partial [Human respiratory syncytial virus A]	2813	0.0	UOA00762
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	2806	0.0	XNJ65498
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	2780	0.0	WPW24840
RNA-directed RNA polymerase, partial [Human respiratory syncytial virus A]	2776	0.0	UOA02430
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	2758	0.0	WPW25407
polymerase, partial [Human respiratory syncytial virus A]	2750	0.0	QYW08899
RNA-directed RNA polymerase, partial [Human respiratory syncytial virus A]	2731	0.0	UOA00786
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	2650	0.0	XJU67465
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	2603	0.0	WPW24739
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	2593	0.0	WPW24550
RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	2573	0.0	XLM45083
RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	2570	0.0	XLM44544
RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	2559	0.0	XHB14815
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	2541	0.0	XBR31690
RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	2498	0.0	XLM44621
RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	2458	0.0	XLM44588
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	2433	0.0	XUX58251
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus A]	2409	0.0	XQP01025
RNA-dependent RNA polymerase [Human respiratory syncytial virus A]	2388	0.0	WJJ42731
Human respiratory syncytial virus B [viruses] Next Previous First
RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	3969	0.0	WXH84863
RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	3745	0.0	XPR31297
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus B]	3649	0.0	XZG21317
RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	3479	0.0	XPR31429
RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	3422	0.0	XAM23627
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus B]	3313	0.0	WWM14464
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus B]	3285	0.0	WWM13969
RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	3097	0.0	XPR31264
RNA-directed RNA polymerase, partial [Human respiratory syncytial virus B]	2985	0.0	AYR18223
polymerase [Human respiratory syncytial virus B]	2982	0.0	QYW13624
RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	2949	0.0	WDA65249
polymerase [Human respiratory syncytial virus B]	2942	0.0	QYW14282
RNA-directed RNA polymerase, partial [Human respiratory syncytial virus B]	2886	0.0	AYR18226
RNA-directed RNA polymerase, partial [Human respiratory syncytial virus B]	2876	0.0	AYR18245
polymerase, partial [Human respiratory syncytial virus B]	2704	0.0	QYW12490
RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	2692	0.0	XHB17730
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus B]	2685	0.0	XAH03861
RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	2649	0.0	XPR31275
RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	2634	0.0	WDA65259
polymerase, partial [Human respiratory syncytial virus B]	2576	0.0	QYW12921
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus B]	2574	0.0	XRL80916
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus B]	2566	0.0	XBQ62612
RNA-dependent RNA polymerase [Human respiratory syncytial virus B]	2484	0.0	XDF40618
polymerase [Human respiratory syncytial virus B]	2457	0.0	QYW13777
RNA-dependent RNA polymerase, partial [Human respiratory syncytial virus B]	2450	0.0	WWO16563
Respiratory syncytial virus type A [viruses] Next Previous First
L polymerase [Respiratory syncytial virus type A]	3905	0.0	AHW81152
L polymerase [Respiratory syncytial virus type A]	3801	0.0	AHW81342
human respiratory syncytial virus [viruses] Next Previous First
putative RNA-directed RNA polymerase L, partial [human respiratory syncytial virus]	3884	0.0	AHA83633
large polymerase, partial [human respiratory syncytial virus]	3716	0.0	AEQ63512
L-GFP [human respiratory syncytial virus]	3565	0.0	QFX69115
RNA-directed RNA polymerase, partial [human respiratory syncytial virus]	3562	0.0	AOD40688
putative RNA-directed RNA polymerase L, partial [human respiratory syncytial virus]	3445	0.0	ANZ79740
RNA-dependent RNA polymerase, partial [human respiratory syncytial virus]	3013	0.0	WVQ61304
RNA-directed RNA polymerase L [human respiratory syncytial virus]	2929	0.0	QJU69994
putative RNA-directed RNA polymerase L, partial [human respiratory syncytial virus]	2851	0.0	AII22035
RNA-dependent RNA polymerase, partial [human respiratory syncytial virus]	2803	0.0	WVQ61638
large polymerase [human respiratory syncytial virus]	2732	0.0	AEQ63556
RNA-directed RNA polymerase [human respiratory syncytial virus]	2651	0.0	QIH29418
putative RNA-directed RNA polymerase L, partial [human respiratory syncytial virus]	2545	0.0	AHV80784
putative RNA-directed RNA polymerase L, partial [human respiratory syncytial virus]	2535	0.0	AII22088
bovine respiratory syncytial virus [viruses] Next Previous First
Polymerase protein [bovine respiratory syncytial virus]	3765	0.0	NP_048058
Respiratory syncytial virus [viruses] Next Previous First
RNA-dependent RNA polymerase, partial [Respiratory syncytial virus]	3691	0.0	YAV97995
large polymerase [Respiratory syncytial virus]	3480	0.0	AEQ63666
RNA-dependent RNA polymerase, partial [Respiratory syncytial virus]	3440	0.0	YAV98281
RNA-dependent RNA polymerase, partial [Respiratory syncytial virus]	2793	0.0	YAV98083
RNA-dependent RNA polymerase [Respiratory syncytial virus]	2736	0.0	WWB00336

Taxonomy

Taxonomy Report
Taxonomy	Number of hits	Number of Organisms	Description
Orthopneumovirus	100	6
. Orthopneumovirus hominis	94	4
.. human respiratory syncytial virus	13	4	human respiratory syncytial virus hits
... Human respiratory syncytial virus A	54	2	Human respiratory syncytial virus A hits
.... Respiratory syncytial virus type A	2	1	Respiratory syncytial virus type A hits
... Human respiratory syncytial virus B	25	1	Human respiratory syncytial virus B hits
. Orthopneumovirus bovis	6	2
.. bovine respiratory syncytial virus	1	1	bovine respiratory syncytial virus hits
.. Respiratory syncytial virus	5	1	Respiratory syncytial virus hits

Filter Results

Clusters producing significant alignments

NP_044598.1(Pneumoviridae)

Reports

XCH38232.1(human respiratory syncytial virus)

Reports

XCH38144.1(Human respiratory syncytial virus A)

Reports

WXH84863.1(Orthopneumovirus)

Reports

AHW81152.1(Human respiratory syncytial virus A)

Reports

AHA83633.1(human respiratory syncytial virus)

Reports

WAO97858.1(Human respiratory syncytial virus A)

Reports

AHW81342.1(Respiratory syncytial virus type A)

Reports

XQO98681.1(Human respiratory syncytial virus A)

Reports

NP_048058.1(Orthopneumovirus bovis)

Reports

XPR31297.1(Orthopneumovirus)

Reports

XPR31210.1(Human respiratory syncytial virus A)

Reports

XQO99066.1(Human respiratory syncytial virus A)

Reports

XAR00679.1(Human respiratory syncytial virus A)

Reports

XQO98307.1(Human respiratory syncytial virus A)

Reports

XNJ65630.1(Human respiratory syncytial virus A)

Reports

XQO99022.1(Human respiratory syncytial virus A)

Reports

AEQ63512.2(human respiratory syncytial virus)

Reports

YAV97995.1(Respiratory syncytial virus)

Reports

XQO98934.1(Human respiratory syncytial virus A)

Reports

XZG21317.1(Human respiratory syncytial virus B)

Reports

XQO98198.1(Human respiratory syncytial virus A)

Reports

QFX69115.1(human respiratory syncytial virus)

Reports

AOD40688.1(human respiratory syncytial virus)

Reports

XQO97703.1(Human respiratory syncytial virus A)

Reports

AEQ63666.1(Respiratory syncytial virus)

Reports

XPR31429.1(Human respiratory syncytial virus B)

Reports

XQP00948.1(Human respiratory syncytial virus A)

Reports

ANZ79740.1(human respiratory syncytial virus)

Reports

YAV98281.1(Respiratory syncytial virus)

Reports

WAK85795.1(Human respiratory syncytial virus A)

Reports

XAM23627.1(Human respiratory syncytial virus B)

Reports

QYW09927.1(Human respiratory syncytial virus A)

Reports

XZG21031.1(Human respiratory syncytial virus A)

Reports

XAR00659.1(Human respiratory syncytial virus A)

Reports

WWM14464.1(Human respiratory syncytial virus B)

Reports

WWM13969.1(Human respiratory syncytial virus B)

Reports

WAO97792.1(Human respiratory syncytial virus A)

Reports

XHB17147.1(Human respiratory syncytial virus A)

Reports

NP_044598.1(
Pneumoviridae
)

XCH38232.1(
human respiratory syncytial virus
)

XCH38144.1(
Human respiratory syncytial virus A
)

WXH84863.1(
Orthopneumovirus
)

AHW81152.1(
Human respiratory syncytial virus A
)

AHA83633.1(
human respiratory syncytial virus
)

WAO97858.1(
Human respiratory syncytial virus A
)

AHW81342.1(
Respiratory syncytial virus type A
)

XQO98681.1(
Human respiratory syncytial virus A
)

NP_048058.1(
Orthopneumovirus bovis
)

XPR31297.1(
Orthopneumovirus
)

XPR31210.1(
Human respiratory syncytial virus A
)

XQO99066.1(
Human respiratory syncytial virus A
)

XAR00679.1(
Human respiratory syncytial virus A
)

XQO98307.1(
Human respiratory syncytial virus A
)

XNJ65630.1(
Human respiratory syncytial virus A
)

XQO99022.1(
Human respiratory syncytial virus A
)

AEQ63512.2(
human respiratory syncytial virus
)

YAV97995.1(
Respiratory syncytial virus
)

XQO98934.1(
Human respiratory syncytial virus A
)

XZG21317.1(
Human respiratory syncytial virus B
)

XQO98198.1(
Human respiratory syncytial virus A
)

QFX69115.1(
human respiratory syncytial virus
)

AOD40688.1(
human respiratory syncytial virus
)

XQO97703.1(
Human respiratory syncytial virus A
)

AEQ63666.1(
Respiratory syncytial virus
)

XPR31429.1(
Human respiratory syncytial virus B
)

XQP00948.1(
Human respiratory syncytial virus A
)

ANZ79740.1(
human respiratory syncytial virus
)

YAV98281.1(
Respiratory syncytial virus
)

WAK85795.1(
Human respiratory syncytial virus A
)

XAM23627.1(
Human respiratory syncytial virus B
)

QYW09927.1(
Human respiratory syncytial virus A
)

XZG21031.1(
Human respiratory syncytial virus A
)

XAR00659.1(
Human respiratory syncytial virus A
)

WWM14464.1(
Human respiratory syncytial virus B
)

WWM13969.1(
Human respiratory syncytial virus B
)

WAO97792.1(
Human respiratory syncytial virus A
)

XHB17147.1(
Human respiratory syncytial virus A
)

XLM44291.1(
Human respiratory syncytial virus A
)

WFP22167.2(
Human respiratory syncytial virus A
)

WKU63440.2(
Human respiratory syncytial virus A
)

AWO12275.1(
Human respiratory syncytial virus A
)

XPR31264.1(
Human respiratory syncytial virus B
)

WKU63490.1(
Human respiratory syncytial virus A
)

WVQ61304.1(
human respiratory syncytial virus
)

XRO62962.1(
Human respiratory syncytial virus A
)

XAR00412.1(
Human respiratory syncytial virus A
)

AYR18223.1(
Human respiratory syncytial virus B
)

QYW13624.1(
Human respiratory syncytial virus B
)

WXH84918.1(
Human respiratory syncytial virus A
)

WDA65249.1(
Human respiratory syncytial virus B
)

QYW14282.1(
Human respiratory syncytial virus B
)

QJU69994.1(
human respiratory syncytial virus
)

XAR00322.1(
Human respiratory syncytial virus A
)

XAR00362.1(
Human respiratory syncytial virus A
)

XPR31123.1(
Human respiratory syncytial virus A
)

AYR18226.1(
Human respiratory syncytial virus B
)

AYR18245.1(
Human respiratory syncytial virus B
)

XQT75251.1(
Human respiratory syncytial virus A
)

XPR31156.1(
Human respiratory syncytial virus A
)

XAR00342.1(
Human respiratory syncytial virus A
)

AII22035.1(
human respiratory syncytial virus
)

UOA00762.1(
Human respiratory syncytial virus A
)

XNJ65498.1(
Human respiratory syncytial virus A
)

WVQ61638.1(
human respiratory syncytial virus
)

YAV98083.1(
Respiratory syncytial virus
)

WPW24840.1(
Human respiratory syncytial virus A
)

UOA02430.1(
Human respiratory syncytial virus A
)

WPW25407.1(
Human respiratory syncytial virus A
)

QYW08899.1(
Human respiratory syncytial virus A
)

WWB00336.1(
Orthopneumovirus
)

AEQ63556.2(
human respiratory syncytial virus
)