LOCUS       JAAQHA010000044         6091 bp    DNA     linear   BCT 13-APR-2022
DEFINITION  Clostridioides difficile strain TW65
            TW65_82_length_6021_cov_20.866634, whole genome shotgun sequence.
ACCESSION   JAAQHA010000044 JAAQHA010000000
VERSION     JAAQHA010000044.1
DBLINK      BioProject: PRJNA612412
            BioSample: SAMN14372067
KEYWORDS    WGS.
SOURCE      Clostridioides difficile (Clostridium difficile)
  ORGANISM  Clostridioides difficile
            Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales;
            Peptostreptococcaceae; Clostridioides.
REFERENCE   1  (bases 1 to 6091)
  AUTHORS   Li,T., Zhu,Y. and Guo,X.
  TITLE     Genome analysis of C. difficile RT078 strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6091)
  AUTHORS   Li,T., Zhu,Y. and Guo,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2020) Department of Microbiology and Immunology,
            Shanghai Jiaotong University School of Medicine, South Chongqing
            Road, Shanghai 200025, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method        :: A5-miseq v. 20150522
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..6091
                     /organism="Clostridioides difficile"
                     /mol_type="genomic DNA"
                     /submitter_seqid="TW65_82_length_6021_cov_20.866634"
                     /strain="TW65"
                     /isolation_source="feces"
                     /host="Sus scrofa"
                     /db_xref="taxon:1496"
                     /geo_loc_name="Taiwan"
                     /collection_date="06-Feb-2012"
ORIGIN      
        1 gccggagctc tgcagtatca acccaaaaag taggcgctca cgagaattct aaccgagcct
       61 acggtggttc tacgatcaac tacaccacaa ttaattatta taaagattcc gcaagtaatg
      121 cggcgtccaa acaagattac tcacaggatc catcaaaatt caccgagcca ctaaaggacg
      181 tgctcataaa aacagctcca gcactcaatt caccaaatgt ggaagcgtgt gggtatagtg
      241 atagagtgtt gcaactcact ttaggcaatt ccactattac tacacaggag gcagcaaatt
      301 cagtagtggc ttacggacgt tggcctgagt ttattagaga tgacgaagca aacccggtgg
      361 accaaccaac tgaaccagat gtggctacat gcagattcta cacactagac actgtaatgt
      421 ggggtaagga gtcgaaaggc tggtggtgga agttacctga cgcactgaga gacatgggtc
      481 tgtttggaca aaacatgtat taccactacc taggaagatc cgggtacact gtgcacgtgc
      541 agtgtaatgc atccaaattt caccaaggtg cactcggggt gtttgcgatt cctgagtatt
      601 gtctggcggg tgacagtgac aagcaaaggt acactagtta tgcaaatgcg aatccaggtg
      661 aaagaggggg aaaattttac tcccaattca acaaggataa cgcagtaaca tccccaaaaa
      721 gagagttctg cccagtggat tatctcctgg gatgtggggt gttactggga aatgcctttg
      781 tatacccaca tcaaatcatt aatctgagga ccaacaacag cgcaactatt gtcctaccat
      841 atgtgaatgc tttggccatt gattcaatgg ttaaacacaa caactggggc attgccattc
      901 tgcccttatc accgctggat tttgctcaag attcatcagt tgaaattcca attactgtga
      961 caattgcccc aatgtgtagc gagttcaacg gccttcgcaa cgtgactgca cctaaatttc
     1021 aaggactacc agtgttgaac actcctggta gtaaccagta cctgacgtca gacaaccacc
     1081 aatcaccatg cgcaatccca gaatttgatg tcactccgcc tattgatatc ccaggtgagg
     1141 ttaaaaacat gatggagctc gccgagatag acaccatgat tcctctcaat ttggagagca
     1201 ccaagagaaa cacaatggac atgtacagag ttactctgag cgacagtgcc gatctatcgc
     1261 aaccaatttt gtgcttgtca ctatccccag catttgatcc gcgcttgtca cacaccatgc
     1321 ttggggaagt actgaactat tatactcatt gggccgggtc cttgaaattt accttcctgt
     1381 tctgtggttc aatgatggct acggggaaaa tcctagtggc ctatgcacca ccaggtgcac
     1441 aaccccccac cagccgtaag gaggctatgt tgggcacaca tgtcatttgg gatcttggcc
     1501 tgcaatcatc ttgtactatg gtggtgccgt ggattagtaa tgtgacatac agacagacta
     1561 cacaagatag tttcactgag ggcggatata tcagcatgtt ctaccaaaca agaattgtgg
     1621 tgccactgtc cacccctaag agtatgagca tgctggggtt tgtgtcagcc tgtaatgatt
     1681 tcagtgtgcg attgctgcga gacaccactc acatttcaca atctgcgctt ccacagggta
     1741 ttgaagattt gacttctgaa gttgcacagg gcgccctaac tttgtcactc ccgaagcaac
     1801 aggatagctt acctgatact aaggccagtg gcccggcgca ttccaaggag gtacctgcac
     1861 tcactgcagt cgagactgga gccaccaatc ctctggcacc atccgacaca gttcaaacgc
     1921 gccacgtagt ccaacgacgc agcaggtcag agtccacaat agaatcattc ttcgcacgcg
     1981 gggcgtgcgt cgctattatt gaggtggaca atgaacaacc aaccacccgg gcacagaaac
     2041 tatttgccat gtggcgcatt acatacaaag atacagtgca gttgcgccgt aagttggagt
     2101 ttttcacata ctctcgtttt gacatggaat tcaccttcgt ggtaaccgcc aacttcacca
     2161 acgctaataa tgggcatgca ctcaaccagg tgtaccagat aatgtacatc cccccagggg
     2221 cacccacacc aaagtcatgg gacgactaca cttggcaaac atcttccaac ccgtccatat
     2281 tttacaccta tggggctgcc ccggcgcgaa tctcagtgcc atacgtgggg ttagccaatg
     2341 cttactcgca cttttacgac ggcttcgcca aggtgccatt gaagacagat gccaatgacc
     2401 agattggtga ttccttgtac agcgccatga cagttgatga ctttggtgta ttggcagttc
     2461 gtgttgtcaa tgatcacaac cccactaaag taacctccaa agtccgcatt tacatgaaac
     2521 ccaaacacgt acgtgtctgg tgccctagac cgccgcgcgc ggtaccttat tatggaccag
     2581 gggtggacta taggaacaac ttggacccct tatctgagaa aggtttgacc acatatggct
     2641 ttgggcatca gaataaagct gtgtacactg ctggttacaa gatctgcaac taccatctcg
     2701 ccactaagga ggatttacaa aatgctgtaa gcatcatgtg gaatagagac ctcttggttg
     2761 ttgaatcaaa agctcaaggt accgactcaa tagcaaggtg caattgcaat gcaggggtgt
     2821 actattgtga gtccagaagg aaatactacc ctgtgtcgtt tgtgggaccc accttccaat
     2881 acatggaggc taatgactac tacccagcta gataccaatc ccacatgtta atcgggcacg
     2941 gctttgcctc accaggtgac tgtggtggta tccttaggtg tcaacatggc gtcatcggaa
     3001 tcgtgacagc tggtggagag ggattagtcg cattctctga cataagggac ttgtatgctt
     3061 acgaggaaga ggccatggag cagggcattt caaactatat tgagtcactc ggtgctgcgt
     3121 tcggtagtgg gttcactcag caaatagggg ataagatatc agaactaacc agcatggtga
     3181 ccagcacgat tacagagaag ctacttaaaa acctaatcaa aattatttca tctctggtga
     3241 ttatcactag aaattacgaa gataccacca cagtgctcgc cactctagct cttcttgggt
     3301 gtgatgtttc accgtggcaa tggctgaaga agaaagcatg tgacactttg gagattccct
     3361 atgttattag acagggtgat agttggttga aaaaatttac tgaggcgtgc aacgcagcta
     3421 aggggttgga atgggtgtcc aacaaaatct caaaatttat tgactggttg agagaaagaa
     3481 tcatcccaca agccagggac aagcttgagt ttgtaaccaa attgaaacag ttggaaatgc
     3541 tagagaatca gatatccaca atacaccaat cttgtccaag tcaggaacac caggaaattt
     3601 tgttcaacaa tgtacgctgg ttgtccattc aatccaagag attcgctcca ttgtacgcac
     3661 ttgaggccaa gagaatacaa aagttggaac acaccattaa taattacata cagttcaaga
     3721 gcaaacaccg tattgagcca gtatgtttgt tagtgcatgg gagcccaggt acaggaaaat
     3781 cagttgcgac taacctaatt gctagagcca tagctgagaa agagaacacc tccacctact
     3841 cgctaccacc ggacccgtct cactttgatg gatacaaaca acaaggtgtg gttatcatgg
     3901 acgacctaaa ccaaaacccg gatggggcag atatgaagct cttttgtcaa atggtgtcca
     3961 ctgtggagtt tatcccacct atggcctcgc tggaagagaa aggcattctg ttcacatcca
     4021 actatgtttt agcctccacc aactccagtc gcatcacacc acctacagta gcccacagtg
     4081 acgctctggc caggaggttc gctttcgata tggatattca agtgatgggc gagtactcca
     4141 gagatggtaa actcaacatg gcaatggcta ctgagacgtg caaggactgc caccaaccag
     4201 caaacttcaa aagatgctgt cctttagtgt gtggtaaggc aattcagtta atggacaaat
     4261 cttccagagt taggtacagt gttgaccaga ttactacaat gattatcaac gagagaaaca
     4321 gaagatctaa cattggcaat tgcatggagg ctttgttcca aggaccactc cagtacaaag
     4381 acctgaaaat tgacatcaag acgaggcccc cccctgaatg catcaatgat ctgcttcaag
     4441 cagttgactc ccaggaagtg agggattatt gtgaaaagaa aggatggatc gtcaacatca
     4501 ctagccaagt tcaaacagag agaaacatta accgagcaat gaccattttg caggcagtga
     4561 caactttcgc cgcagtggct ggtgtcgtgt acgtcatgta caagttattc gctggacacc
     4621 agggagcata cactggtctg ccaaacaaaa gacccaatgt gcccaccatt agagcagcaa
     4681 aagtgcaagg gcctgggttt gactatgcag tggctatggc taaaagaaac attgttacag
     4741 caactactag caaaggggag ttcacaatgc taggagtcca cgacaacgtg gccattttac
     4801 caactcatgc ctcacctggt gagagtattg taattgatgg caaagaggtt gaaatcctag
     4861 acgctaaagc cctcgaagat caggcaggca ctaatctgga aatcaccata ataaccctca
     4921 aaagaaatga aaagttcaga gatatcagac aacacatacc cactcaaatc accgagacga
     4981 atgatggagt tctgattgtg aacactagta agtaccccaa catgtatgtt cctgtcggtg
     5041 ctgtgactga gcagggatac ctaaatctcg gtgggcgcca gactgctcgt attctaatgt
     5101 acaactttcc aaccagagct ggtcagtgtg gtggagtcat cacatgcact gggaaagtca
     5161 tcgggatgca cgttggtggg aatggttcac atgggtttgc agcggccctg aagcggtcat
     5221 acttcactca gagccaaggt gaaatccagt ggatgagacc atcaaaggag gcagggtatc
     5281 caattataaa cgccccaacc aagaccaagc tcgagcccag tgctttccac tatgtgtttg
     5341 aaggagtaaa ggaaccagca gtcctcacaa agaatgatcc cagactcaaa acagactttg
     5401 aagaagcaat cttctctaag tatgtaggga acaagatcac tgaggtggat gagtacatga
     5461 aagaggcagt ggaccattat gctggacaac ttatgtcgct ggatatcagc acagagcaaa
     5521 tgtgtctaga agacgccatg tatggtactg atggtctgga ggcgctagat ctgtctacca
     5581 gtgccgggta cccctacgtg gcaatgggga agaagaagag agatatccta aacaagcaaa
     5641 ccagagacac caaagaaatg caaagacttt tggacgctta cggaatcaac ctaccattag
     5701 tgacatatgt caaggacgag ctgaggtcca aaacaaaagt ggaacaggga aaatccagac
     5761 tgattgaagc ttccagtcta aatgactcag tggccatgag aatggcattt ggaaaccttt
     5821 atgcagcatt ccacaggaat ccaggggtcg tcactggtag tgcagttgga tgcgatccag
     5881 acctattctg gagcaagatc ccagtgttga tggaagaaaa gctatttgcc tttgattaca
     5941 caggatacga cgcatcactt agcccagctt ggtttgaggc actcaagatg gtgttagaga
     6001 aaattggttt tggagataga gtggattaca tagactacct taaccattca caccacttgt
     6061 acaaaaacaa gatatattgt gttaagggcg g
//