LOCUS       NZ_JAAQGR010000049      2105 bp    DNA     linear   CON 05-FEB-2024
DEFINITION  Clostridioides difficile strain TW12
            TW12_134_length_2047_cov_30.185638, whole genome shotgun sequence.
ACCESSION   NZ_JAAQGR010000049 NZ_JAAQGR010000000
VERSION     NZ_JAAQGR010000049.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14371829
            Assembly: GCF_022970075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridioides difficile (Clostridium difficile)
  ORGANISM  Clostridioides difficile
            Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales;
            Peptostreptococcaceae; Clostridioides.
REFERENCE   1  (bases 1 to 2105)
  AUTHORS   Li,T., Zhu,Y. and Guo,X.
  TITLE     Genome analysis of C. difficile RT078 strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2105)
  AUTHORS   Li,T., Zhu,Y. and Guo,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2020) Department of Microbiology and Immunology,
            Shanghai Jiaotong University School of Medicine, South Chongqing
            Road, Shanghai 200025, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAQGR010000049.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: A5-miseq v. 20150522
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022970075.1-RS_2025_03_07
            Annotation Date                   :: 03/07/2025 03:04:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,750
            CDSs (total)                      :: 3,689
            Genes (coding)                    :: 3,638
            CDSs (with protein)               :: 3,638
            Genes (RNA)                       :: 61
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 12 of 51
            Pseudo Genes (incomplete)         :: 37 of 51
            Pseudo Genes (internal stop)      :: 11 of 51
            Pseudo Genes (multiple problems)  :: 7 of 51
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2105
                     /organism="Clostridioides difficile"
                     /mol_type="genomic DNA"
                     /submitter_seqid="TW12_134_length_2047_cov_30.185638"
                     /strain="TW12"
                     /isolation_source="feces"
                     /host="Sus scrofa"
                     /db_xref="taxon:1496"
                     /geo_loc_name="Taiwan"
                     /collection_date="2012-03-25"
CONTIG      join(JAAQGR010000049.1:1..2105)
//