Sequences producing significant alignments

• Download
  • FASTA (completesequence)
  • FASTA (aligned sequences)
  • GenBank (completesequence)
  • Hit Table (text)
  • Hit Table (CSV)
  • Text
  • Descriptions Table (CSV)
  • XML
  • ASN.1
• Select columns
  • Cluster Composition
  • Cluster Anscestor
  • Description
  • Scientific Name
  • Scientific Name
  • Common Name
  • Taxid
  • Max Score
  • Total Score
  • Query Coverage
  • E value
  • Percent Identity
  • Acc. Len
  • Accession
  • Restore defaults
• Show 10 50 100 250 500 1000
• Help
  Subject sequences can be removed or added from within the Descriptions tab and the selections will carry through to the other tabbed views. Use the formats in Download to save data for selected sequences. Manage Columns adds and subtracts data columns from the Descriptions table. Use the click outs to see the selected results in GenBank , Graphical Sequence Viewer , BLAST Tree View , COBALT multiple sequence alignment .

• hover to see the title
• click to show alignments
• Show Conserved Domains

• Alignment Scores
• < 40
• 40 - 50
• 50 - 80
• 80 - 200
• >= 200
• Help
  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.

• Alignment view Pairwise Pairwise with dots for identities Query-anchored with dots for identities Query-anchored with letters for identities Flat query-anchored with dots for identities Flat query-anchored with letters for identities
• CDS feature
• Line length: 60 90 120 150
• Help
  • Alignment view: Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
  • CDS feature: Show annotated coding region and translation. more...
  • Line length: Number of letters to show on one line in an alignment.
• Restore defaults

• Download
  • FASTA (completesequence)
  • FASTA (aligned sequences)
  • GenBank (completesequence)
  • Hit Table (text)
  • Hit Table (CSV)
  • Text
  • XML
  • ASN.1