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Zika virus reprograms the host tRNA epitranscriptome to adapt translation to A-ending codon bias

2025-06-03 | Preprint
DOI: 10.1101/2025.06.03.657606
Contributors: Patrick Eldin; Eric Bernard; Cathrine B. Vågbø; Lynn George; Masahiko Ajiro; Masatoshi Hagiwara; Geir Slupphaug; Laurence Briant
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Crossref

Invention of an oral medication for cardiac Fabry disease caused by RNA mis-splicing

Science Advances
2025-04-09 | Journal article | Author
DOI: 10.1126/sciadv.adt9695
Contributors: Tomonari Awaya; Teruo Sawada; Megumu Saito; Masatoshi Hagiwara; Masahiko Ajiro; Kei Iida; Hiroko Kobayashi; Kentoku Gotanda; Toshiharu Noji; Naohiro Takemoto et al.
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Comparison of the Sensory Profile Among Autistic Individuals and Individuals with Williams Syndrome

Journal of Autism and Developmental Disorders
2024 | Journal article
DOI: 10.1007/S10803-023-06205-1
WOSUID: WOS:001149389600003
Contributors: Hirai, Masahiro; Ikeda, Ayaka; Kato, Takeo; Ikeda, Takahiro; Asada, Kosuke; Hakuno, Yoko; Matsushima, Kanae; Awaya, Tomonari; Okazaki, Shin; Kato, Toshihiro et al.
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Antagonist of sphingosine 1-phosphate receptor 3 reduces cold injury of rat donor hearts for transplantation

Translational Research
2023 | Journal article
DOI: 10.1016/J.TRSL.2022.11.003
WOSUID: WOS:000978325500001
Contributors: Kanemitsu, Eisho; Zhao, Xiangdong; Iwaisako, Keiko; Inoue, Asuka; Takeuchi, Akihide; Yagi, Shintaro; Masumoto, Hidetoshi; Ohara, Hiroaki; Hosokawa, Motoyasu; Awaya, Tomonari et al.
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Application of the CDK9 inhibitor FIT-039 for the treatment of KSHV-associated malignancy

BMC Cancer
2023 | Journal article
DOI: 10.1186/S12885-023-10540-Y
WOSUID: WOS:001003263200002
Contributors: Sakamoto, Tetsunori; Ajiro, Masahiko; Watanabe, Akira; Matsushima, Shingo; Ueda, Keiji; Hagiwara, Masatoshi
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Bioluminescent immunoassay for serine/threonine protein kinase activity using an aequorin-labeled monoclonal antibody and a synthetic peptide as a substrate

Biochemical and Biophysical Research Communications
2023 | Journal article
DOI: 10.1016/J.BBRC.2023.09.062
WOSUID: WOS:001087060800001
Contributors: Sato, Jun-ich; Onogi, Hiroshi; Nomura, Namiko; Hagiwara, Masatoshi; Inouye, Satoshi
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Branchpoints as potential targets of exon-skipping therapies for genetic disorders

Molecular Therapy - Nucleic Acids
2023 | Journal article
DOI: 10.1016/J.OMTN.2023.07.011
WOSUID: WOS:001055663800001
Contributors: Ohara, Hiroaki; Hosokawa, Motoyasu; Awaya, Tomonari; Hagiwara, Atsuko; Kurosawa, Ryo; Sako, Yukiya; Ogawa, Megumu; Ogasawara, Masashi; Noguchi, Satoru; Goto, Yuichi et al.
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Chemically inducible splice-neoantigens for cancer immunotherapy

Cancer Research
2023 | Journal article
DOI: 10.1158/1538-7445.AM2023-5093
WOSUID: WOS:001008499103451
Contributors: Matsushima, Shingo; Ajiro, Masahiko; Iida, Kei; Chamoto, Kenji; Honjo, Tasuku; Hagiwara, Masatoshi
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Comparison of the social responsiveness scale-2 among individuals with Autism Spectrum Disorder and Williams Syndrome in Japan (Sep, 10.1007/s10803-022-05740-7, 2022)

Journal of Autism and Developmental Disorders
2023 | Journal article
DOI: 10.1007/S10803-022-05810-W
WOSUID: WOS:000900946800002
Contributors: Hirai, Masahiro; Asada, Kosuke; Kato, Takeo; Ikeda, Takahiro; Hakuno, Yoko; Ikeda, Ayaka; Matsushima, Kanae; Awaya, Tomonari; Okazaki, Shin; Kato, Toshihiro et al.
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Cryptotanshinone is a candidate therapeutic agent for interstitial lung disease associated with a BRICHOS-domain mutation of SFTPC

IScience
2023 | Journal article
DOI: 10.1016/J.ISCI.2023.107731
WOSUID: WOS:001074609300001
Contributors: Hosokawa, Motoyasu; Mikawa, Ryuta; Hagiwara, Atsuko; Okuno, Yukiko; Awaya, Tomonari; Yamamoto, Yuki; Takahashi, Senye; Yamaki, Haruka; Osawa, Mitsujiro; Setoguchi, Yasuhiro et al.
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Identification of the α2 chain of interleukin-13 receptor as a potential biomarker for predicting castration resistance of prostate cancer using patient-derived xenograft models

Cancer Reports
2023 | Journal article
DOI: 10.1002/CNR2.1701
WOSUID: WOS:000851528700001
Contributors: Nagai, Takahiro; Terada, Naoki; Fujii, Masato; Nagata, Yasuhisa; Nakahara, Kozue; Mukai, Shoichiro; Okasho, Kosuke; Kamiyama, Yuki; Akamatsu, Shusuke; Kobayashi, Takashi et al.
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PDIVAS: Pathogenicity predictor for Deep-Intronic Variants causing Aberrant Splicing

BMC Genomics
2023 | Journal article
DOI: 10.1186/S12864-023-09645-2
WOSUID: WOS:001084722200002
Contributors: Kurosawa, Ryo; Iida, Kei; Ajiro, Masahiko; Awaya, Tomonari; Yamada, Mamiko; Kosaki, Kenjiro; Hagiwara, Masatoshi
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PDIVAS: Pathogenicity predictor for Deep-Intronic Variants causing Aberrant Splicing

MedRxiv
2023 | Journal article
DOI: 10.1101/2023.03.20.23287464
WOSUID: PPRN:46942109
Contributors: Kurosawa, Ryo; Iida, Kei; Ajiro, Masahiko; Awaya, Tomonari; Yamada, Mamiko; Kosaki, Kenjiro; Hagiwara, Masatoshi
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RNA-seq analysis, targeted long-read sequencing and in silico prediction to unravel pathogenic intronic events and complicated splicing abnormalities in dystrophinopathy

Human Genetics
2023 | Journal article
DOI: 10.1007/S00439-022-02485-2
WOSUID: WOS:000849296300002
Contributors: Okubo, Mariko; Noguchi, Satoru; Awaya, Tomonari; Hosokawa, Motoyasu; Tsukui, Nobue; Ogawa, Megumu; Hayashi, Shinichiro; Komaki, Hirofumi; Mori-Yoshimura, Madoka; Oya, Yasushi et al.
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Astrocyte-targeting therapy rescues cognitive impairment caused by neuroinflammation via the Nrf2 pathway

Proceedings of the National Academy of Sciences
2023-08-15 | Journal article
DOI: 10.1073/pnas.2303809120
Contributors: Akiko Nakano-Kobayashi; Andres Canela; Toru Yoshihara; Masatoshi Hagiwara
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Chemical induction of splice-neoantigens attenuates tumor growth in a preclinical model of colorectal cancer

Science Translational Medicine
2022 | Journal article
DOI: 10.1126/SCITRANSLMED.ABN6056
WOSUID: WOS:000909183300002
Contributors: Matsushima, Shingo; Ajiro, Masahiko; Iida, Kei; Chamoto, Kenji; Honjo, Tasuku; Hagiwara, Masatoshi
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Comparison of the Social Responsiveness Scale-2 among Individuals with Autism Spectrum Disorder and Williams Syndrome in Japan

Journal of Autism and Developmental Disorders
2022 | Journal article
DOI: 10.1007/S10803-022-05740-7
WOSUID: WOS:000862630300001
Contributors: Hirai, Masahiro; Asada, Kosuke; Kato, Takeo; Ikeda, Takahiro; Hakuno, Yoko; Ikeda, Ayaka; Matsushima, Kanae; Awaya, Tomonari; Okazaki, Shin; Kato, Toshihiro et al.
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Disease Modeling of Hermansky-Pudlak Syndrome Type I Using Patient-Specific iPS Cells

American Journal of Respiratory and Critical Care Medicine
2022 | Journal article
WOSUID: WOS:000792480406265
Contributors: Suezawa, T.; Kanagaki, S.; Korogi, Y.; Nakao, K.; Hirai, T.; Murakami, K.; Hagiwara, M.; Gotoh, S.
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Epigenetic aging in Williams syndrome

Journal of Child Psychology and Psychiatry
2022 | Journal article
DOI: 10.1111/JCPP.13613
WOSUID: WOS:000781819200001
Contributors: Okazaki, Satoshi; Kimura, Ryo; Otsuka, Ikuo; Tomiwa, Kiyotaka; Funabiki, Yasuko; Hagiwara, Masatoshi; Murai, Toshiya; Hishimoto, Akitoyo
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iPSC-derived mesenchymal cells that support alveolar organoid development

Cell Reports Methods
2022 | Journal article
DOI: 10.1016/J.CRMETH.2022.100314
WOSUID: WOS:000907959300009
Contributors: Tamai, Koji; Sakai, Kouji; Yamaki, Haruka; Moriguchi, Keita; Igura, Koichi; Maehana, Shotaro; Suezawa, Takahiro; Takehara, Kazuaki; Hagiwara, Masatoshi; Hirai, Toyohiro et al.
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Method for Identifying Sequence Motifs in Pre-miRNAs for Small-Molecule Binding

ACS Chemical Biology
2022 | Journal article
DOI: 10.1021/ACSCHEMBIO.2C00452
WOSUID: WOS:000865441000001
Contributors: Takashima, Yusuke; Murata, Asako; Iida, Kei; Sugai, Ayako; Hagiwara, Masatoshi; Nakatani, Kazuhiko
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Safety of the cyclin dependent kinase 9 (CDK9) inhibitor FIT039 for cervical intraepithelial neoplasia (CIN) 1 or 2 in a phase I/II trial

Journal of Clinical Oncology
2022 | Journal article
WOSUID: WOS:000863680300915
Contributors: Hamanishi, Junzo; Sumi, Eriko; Miyamoto, Taito; Uozumi, Ryuji; Yamanoi, Koji; Tada, Harue; Amino, Yoko; Hidaka, Yu; Ukita, Masayo; Yamaguchi, Ken et al.
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CDC2-like (CLK) protein kinase inhibition as a novel targeted therapeutic strategy in prostate cancer

Scientific Reports
2021 | Journal article
DOI: 10.1038/S41598-021-86908-6
WOSUID: WOS:000640434400096
Contributors: Uzor, Simon; Porazinski, Sean R.; Li, Ling; Clark, Bethany; Ajiro, Masahiko; Iida, Kei; Hagiwara, Masatoshi; Alqasem, Abdullah A.; Perks, Claire M.; Wilson, Ian D. et al.
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Core-shell hydrogel microfiber-expanded pluripotent stem cell-derived lung progenitors applicable to lung reconstruction in vivo

Biomaterials
2021 | Journal article
DOI: 10.1016/J.BIOMATERIALS.2021.121031
WOSUID: WOS:000690385400003
Contributors: Ikeo, Satoshi; Yamamoto, Yuki; Ikeda, Kazuhiro; Sone, Naoyuki; Korogi, Yohei; Tomiyama, Lucia; Matsumoto, Hisako; Hirai, Toyohiro; Hagiwara, Masatoshi; Gotoh, Shimpei
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Directed induction of alveolar type I cells derived from pluripotent stem cells via Wnt signaling inhibition

Stem Cells
2021 | Journal article
DOI: 10.1002/STEM.3302
WOSUID: WOS:000592259700001
Contributors: Kanagaki, Shuhei; Ikeo, Satoshi; Suezawa, Takahiro; Yamamoto, Yuki; Seki, Masahide; Hirai, Toyohiro; Hagiwara, Masatoshi; Suzuki, Yutaka; Gotoh, Shimpei
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Disease modeling of pulmonary fibrosis using human pluripotent stem cell-derived alveolar organoids

Stem Cell Reports
2021 | Journal article
DOI: 10.1016/J.STEMCR.2021.10.015
WOSUID: WOS:000731616500012
Contributors: Suezawa, Takahiro; Kanagaki, Shuhei; Moriguchi, Keita; Masui, Atsushi; Nakao, Kazuhisa; Toyomoto, Masayasu; Tamai, Koji; Mikawa, Ryuta; Hirai, Toyohiro; Murakami, Koji et al.
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Endogenous agonist-bound S1PR3 structure reveals determinants of G protein-subtype bias

Science Advances
2021 | Journal article
DOI: 10.1126/SCIADV.ABF5325
WOSUID: WOS:000659923500019
Contributors: Maeda, Shintaro; Shiimura, Yuki; Asada, Hidetsugu; Hirata, Kunio; Luo, Fangjia; Nango, Eriko; Tanaka, Nobuo; Toyomoto, Masayasu; Inoue, Asuka; Aoki, Junken et al.
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Hydroxypropyl Cyclodextrin Improves Amiodarone-induced Aberrant Lipid Homeostasis of Alveolar Cells

American Journal of Respiratory Cell and Molecular Biology
2021 | Journal article
DOI: 10.1165/RCMB.2020-0119OC
WOSUID: WOS:000636654300014
Contributors: Kanagaki, Shuhei; Suezawa, Takahiro; Moriguchi, Keita; Nakao, Kazuhisa; Toyomoto, Masayasu; Yamamoto, Yuki; Murakami, Koji; Hagiwara, Masatoshi; Gotoh, Shimpei
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Modeling of lung phenotype of Hermansky-Pudlak syndrome type I using patient-specific iPSCs

Respiratory Research
2021 | Journal article
DOI: 10.1186/S12931-021-01877-8
WOSUID: WOS:000714602800002
Contributors: Suezawa, Takahiro; Kanagaki, Shuhei; Korogi, Yohei; Nakao, Kazuhisa; Hirai, Toyohiro; Murakami, Koji; Hagiwara, Masatoshi; Gotoh, Shimpei
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Multicellular modeling of ciliopathy by combining iPS cells and microfluidic airway-on-a-chip technology

Science Translational Medicine
2021 | Journal article
DOI: 10.1126/SCITRANSLMED.ABB1298
WOSUID: WOS:000678119700002
Contributors: Sone, Naoyuki; Konishi, Satoshi; Igura, Koichi; Tama, Koji; Ikeo, Satoshi; Korogi, Yohei; Kanagaki, Shuhei; Namba, Toshinori; Yamamoto, Yuki; Xu, Yifei et al.
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S1PR3-G<sub>12</sub>-biased agonist ALESIA targets cancer metabolism and promotes glucose starvation

Cell Chemical Biology
2021 | Journal article
DOI: 10.1016/J.CHEMBIOL.2021.01.004
WOSUID: WOS:000686567700006
Contributors: Toyomoto, Masayasu; Inoue, Asuka; Iida, Kei; Denawa, Masatsugu; Kii, Isao; Kadji, Francois Marie Ngako; Kishi, Takayuki; Im, Dohyun; Shimamura, Tatsuro; Onogi, Hiroshi et al.
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Therapeutic manipulation of <i>IKBKAP</i> mis-splicing with a small molecule to cure familial dysautonomia

Nature Communications
2021 | Journal article
DOI: 10.1038/S41467-021-24705-5
WOSUID: WOS:000680504900007
Contributors: Ajiro, Masahiko; Awaya, Tomonari; Kim, Young Jin; Iida, Kei; Denawa, Masatsugu; Tanaka, Nobuo; Kurosawa, Ryo; Matsushima, Shingo; Shibata, Saiko; Sakamoto, Tetsunori et al.
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Therapeutic manipulation of <i>IKBKAP</i> mis-splicing with a small molecule to cure familial dysautonomia (Jul, 10.1038/s41467-021-24705-5, 2021)

Nature Communications
2021 | Journal article
DOI: 10.1038/S41467-021-26287-8
WOSUID: WOS:000706749500018
Contributors: Ajiro, Masahiko; Awaya, Tomonari; Kim, Young Jin; Iida, Kei; Denawa, Masatsugu; Tanaka, Nobuo; Kurosawa, Ryo; Matsushima, Shingo; Shibata, Saiko; Sakamoto, Tetsunori et al.
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Different effects of methylphenidate and atomoxetine on the behavior and brain transcriptome of zebrafish

Molecular Brain
2020 | Journal article
DOI: 10.1186/S13041-020-00614-4
WOSUID: WOS:000533905000003
Contributors: Suzuki, Shiho; Kimura, Ryo; Maegawa, Shingo; Nakata, Masatoshi; Hagiwara, Masatoshi
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Dysregulation of the oxytocin receptor gene in Williams syndrome

Psychoneuroendocrinology
2020 | Journal article
DOI: 10.1016/J.PSYNEUEN.2020.104631
WOSUID: WOS:000528206800017
Contributors: Kimura, Ryo; Tomiwa, Kiyotaka; Inoue, Ryo; Suzuki, Shiho; Nakata, Masatoshi; Awaya, Tomonari; Kato, Takeo; Okazaki, Shin; Heike, Toshio; Hagiwara, Masatoshi
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High-resolution imaging mass spectrometry combined with transcriptomic analysis identified a link between fatty acid composition of phosphatidylinositols and the immune checkpoint pathway at the primary tumour site of breast cancer

British Journal of Cancer
2020 | Journal article
DOI: 10.1038/S41416-019-0662-8
WOSUID: WOS:000510823600011
Contributors: Kawashima, Masahiro; Tokiwa, Mariko; Nishimura, Tomomi; Kawata, Yukiko; Sugimoto, Masahiro; Kataoka, Tatsuki R.; Sakurai, Takaki; Iwaisako, Keiko; Suzuki, Eiji; Hagiwara, Masatoshi et al.
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Identification of Qk as a Glial Precursor Cell Marker that Governs the Fate Specification of Neural Stem Cells to a Glial Cell Lineage

Stem Cell Reports
2020 | Journal article
DOI: 10.1016/J.STEMCR.2020.08.010
WOSUID: WOS:000579700600010
Contributors: Takeuchi, Akihide; Takahashi, Yuji; Iida, Kei; Hosokawa, Motoyasu; Irie, Koichiro; Ito, Mikako; Brown, J. B.; Ohno, Kinji; Nakashima, Kinichi; Hagiwara, Masatoshi
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Integrated DNA methylation analysis reveals a potential role for <i>ANKRD30B</i> in Williams syndrome

Neuropsychopharmacology
2020 | Journal article
DOI: 10.1038/S41386-020-0675-2
WOSUID: WOS:000528295100001
Contributors: Kimura, Ryo; Lardenoije, Roy; Tomiwa, Kiyotaka; Funabiki, Yasuko; Nakata, Masatoshi; Suzuki, Shiho; Awaya, Tomonari; Kato, Takeo; Okazaki, Shin; Murai, Toshiya et al.
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Mechanism-Based Personalized Medicine for Cystic Fibrosis by Suppressing Pseudo Exon Inclusion

Cell Chemical Biology
2020 | Journal article
DOI: 10.1016/J.CHEMBIOL.2020.08.013
WOSUID: WOS:000600019000003
Contributors: Shibata, Saiko; Ajiro, Masahiko; Hagiwara, Masatoshi
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Multilateral Bioinformatics Analyses Reveal the Function-Oriented Target Specificities and Recognition of the RNA-Binding Protein SFPQ

IScience
2020 | Journal article
DOI: 10.1016/J.ISCI.2020.101325
WOSUID: WOS:000554920400002
Contributors: Iida, Kei; Hagiwara, Masatoshi; Takeuchi, Akihide
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Overview of KAGRA: Detector design and construction history

ArXiv
2020 | Journal article
WOSUID: PPRN:48290535
Contributors: Akutsu, T.; Ando, M.; Arai, K.; Arai, Y.; Araki, S.; Araya, A.; Aritomi, N.; Aso, Y.; Bae, S.-W.; Bae, Y.-B. et al.
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Therapeutics potentiating microglial p21-Nrf2 axis can rescue neurodegeneration caused by neuroinflammation

Science Advances
2020 | Journal article
DOI: 10.1126/SCIADV.ABC1428
WOSUID: WOS:000592174000019
Contributors: Nakano-Kobayashi, A.; Fukumoto, A.; Morizane, A.; Nguyen, D. T.; Le, T. M.; Hashida, K.; Hosoya, T.; Takahashi, R.; Takahashi, J.; Hori, O. et al.
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<i>In Vitro</i> Disease Modeling of Hermansky-Pudlak Syndrome Type 2 Using Human Induced Pluripotent Stem Cell-Derived Alveolar Organoids

Stem Cell Reports
2019 | Journal article
DOI: 10.1016/J.STEMCR.2019.01.014
WOSUID: WOS:000460407800001
Contributors: Korogi, Yohei; Gotoh, Shimpei; Ikeo, Satoshi; Yamamoto, Yuki; Sone, Naoyuki; Tamai, Koji; Konishi, Satoshi; Nagasaki, Tadao; Matsumoto, Hisako; Ito, Isao et al.
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<i>In Vitro</i> Disease Modeling of Hermansky-Pudlak Syndrome Type 2 Using Human Induced Pluripotent Stem Cell-Derived Alveolar Organoids (vol 12, pg 431, 2019)

Stem Cell Reports
2019 | Journal article
DOI: 10.1016/J.STEMCR.2019.05.022
WOSUID: WOS:000474644900018
Contributors: Korogi, Yohei; Gotoh, Shimpei; Ikeo, Satoshi; Yamamoto, Yuki; Sone, Naoyuki; Tamai, Koji; Konishi, Satoshi; Nagasaki, Tadao; Matsumoto, Hisako; Ito, Isao et al.
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An arm length stabilization system for KAGRA and future gravitational-wave detectors

ArXiv
2019 | Journal article
WOSUID: PPRN:50952383
Contributors: Akutsu, T.; Ando, M.; Arai, K.; Arai, K.; Arai, Y.; Araki, S.; Araya, A.; Aritomi, N.; Aso, Y.; Bae, S. et al.
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An epigenetic biomarker for adult high-functioning autism spectrum disorder

Scientific Reports
2019 | Journal article
DOI: 10.1038/S41598-019-50250-9
WOSUID: WOS:000487002100057
Contributors: Kimura, Ryo; Nakata, Masatoshi; Funabiki, Yasuko; Suzuki, Shiho; Awaya, Tomonari; Murai, Toshiya; Hagiwara, Masatoshi
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DYRK1A and cognition: A lifelong relationship

Pharmacology & Therapeutics
2019 | Journal article
DOI: 10.1016/J.PHARMTHERA.2018.09.010
WOSUID: WOS:000457951500012
Contributors: Arbones, Maria L.; Thomazeau, Aurore; Nakano-Kobayashi, Akiko; Hagiwara, Masatoshi; Delabar, Jean M.
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INTEGRATED EPIGENETIC ANALYSIS OF WILLIAMS SYNDROME

European Neuropsychopharmacology
2019 | Journal article
DOI: 10.1016/J.EURONEURO.2019.08.248
WOSUID: WOS:000488216600435
Contributors: Kimura, Ryo; Lardenoije, Roy; Tomiwa, Kiyotaka; Funabiki, Yasuko; Nakata, Masatoshi; Suzuki, Shiho; Awaya, Tomonari; Kato, Takeo; Okazaki, Shin; Murai, Toshiya et al.
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Integrative network analysis reveals biological pathways associated with Williams syndrome

Journal of Child Psychology and Psychiatry
2019 | Journal article
DOI: 10.1111/JCPP.12999
WOSUID: WOS:000468313500010
Contributors: Kimura, Ryo; Swarup, Vivek; Tomiwa, Kiyotaka; Gandal, Michael J.; Parikshak, Neelroop N.; Funabiki, Yasuko; Nakata, Masatoshi; Awaya, Tomonari; Kato, Takeo; Iida, Kei et al.
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Loss of RNA-Binding Protein <i>Sfpq</i> Causes Long-Gene Transcriptopathy in Skeletal Muscle and Severe Muscle Mass Reduction with Metabolic Myopathy

IScience
2019 | Journal article
DOI: 10.1016/J.ISCI.2019.02.023
WOSUID: WOS:000462829500019
Contributors: Hosokawa, Motoyasu; Takeuchi, Akihide; Tanihata, Jun; Iida, Kei; Takeda, Shin'ichi; Hagiwara, Masatoshi
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Peer review (5 reviews for 5 publications/grants)

Review activity for Advanced science. (1)
Review activity for Cell death and disease. (1)
Review activity for NPJ Parkinson's disease. (1)
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Review activity for Scientific data. (1)
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