(cache)NCBI Blast:ref|NC

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Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	100
Match/Mismatch scores	1,-2
Gapcosts	0,0
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date
Number of letters	6,864,875,299
Number of sequences	47,362,704
Entrez query	Includes: Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	34
Effective length of query	16942
Effective length of database	5254543363
Effective search space	89022473655946
Effective search space used	89022473655946

Job Title

ref|NC_005436.1| ...

RID

4PB0YHDK016 Search expires on 06-14 03:35 am

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Results for

Program

BLASTN

Citation

Database

SRA

See details

Query ID

SRA Blast search set information
Experiment	Runs
SRX4734343	SRR7896912 SRR7896916 SRR7896926 SRR7896936

NC_005436.1

Description

Pipistrellus abramus mitochondrion, complete genome ...

Molecule type

nucleic acid

Query Length

16976

Other reports

Distance tree of results MSA viewer

Filter Results

Descriptions

select all
82 sequences selected

, Reading indexes 1-5, displaying indexes 1-5

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq gnl\|SRA\|SRR7896912.4284789.2	SRX4734343	196	196	1%	3e-46	93.28%	150	SRA:SRR7896912.4284789.2
2Select seq gnl\|SRA\|SRR7896912.2261114.1	SRX4734343	193	193	1%	4e-45	90.00%	149	SRA:SRR7896912.2261114.1
3Select seq gnl\|SRA\|SRR7896912.353731.1	SRX4734343	189	189	1%	5e-44	89.47%	150	SRA:SRR7896912.353731.1
4Select seq gnl\|SRA\|SRR7896912.4277479.1	SRX4734343	187	187	1%	2e-43	89.80%	150	SRA:SRR7896912.4277479.1
5Select seq gnl\|SRA\|SRR7896912.3359397.2	SRX4734343	187	187	1%	2e-43	91.79%	150	SRA:SRR7896912.3359397.2
6Select seq gnl\|SRA\|SRR7896912.3583732.1	SRX4734343	183	183	1%	2e-42	89.66%	148	SRA:SRR7896912.3583732.1
7Select seq gnl\|SRA\|SRR7896912.1503678.1	SRX4734343	182	182	1%	8e-42	89.19%	151	SRA:SRR7896912.1503678.1
8Select seq gnl\|SRA\|SRR7896912.4235127.1	SRX4734343	180	180	1%	3e-41	88.24%	151	SRA:SRR7896912.4235127.1
9Select seq gnl\|SRA\|SRR7896912.3757404.1	SRX4734343	180	180	1%	3e-41	88.67%	149	SRA:SRR7896912.3757404.1
10Select seq gnl\|SRA\|SRR7896912.4013797.1	SRX4734343	178	178	1%	1e-40	90.00%	151	SRA:SRR7896912.4013797.1
11Select seq gnl\|SRA\|SRR7896912.3386134.1	SRX4734343	178	178	1%	1e-40	90.37%	151	SRA:SRR7896912.3386134.1
12Select seq gnl\|SRA\|SRR7896912.1748011.2	SRX4734343	178	178	1%	1e-40	90.98%	151	SRA:SRR7896912.1748011.2
13Select seq gnl\|SRA\|SRR7896912.4479854.1	SRX4734343	176	176	1%	4e-40	90.98%	151	SRA:SRR7896912.4479854.1
14Select seq gnl\|SRA\|SRR7896912.3386134.2	SRX4734343	176	176	1%	4e-40	90.30%	149	SRA:SRR7896912.3386134.2
15Select seq gnl\|SRA\|SRR7896912.2198939.2	SRX4734343	176	176	1%	4e-40	90.30%	150	SRA:SRR7896912.2198939.2
16Select seq gnl\|SRA\|SRR7896912.1418108.2	SRX4734343	176	176	1%	4e-40	90.30%	149	SRA:SRR7896912.1418108.2
17Select seq gnl\|SRA\|SRR7896912.241961.2	SRX4734343	176	176	1%	4e-40	90.30%	149	SRA:SRR7896912.241961.2
18Select seq gnl\|SRA\|SRR7896912.4277479.2	SRX4734343	174	174	1%	1e-39	88.89%	151	SRA:SRR7896912.4277479.2
19Select seq gnl\|SRA\|SRR7896912.4172155.2	SRX4734343	174	174	1%	1e-39	90.30%	150	SRA:SRR7896912.4172155.2
20Select seq gnl\|SRA\|SRR7896912.1418108.1	SRX4734343	174	174	1%	1e-39	87.92%	151	SRA:SRR7896912.1418108.1
21Select seq gnl\|SRA\|SRR7896912.4505960.1	SRX4734343	172	172	1%	5e-39	87.50%	151	SRA:SRR7896912.4505960.1
22Select seq gnl\|SRA\|SRR7896912.3652625.2	SRX4734343	172	172	1%	5e-39	90.70%	145	SRA:SRR7896912.3652625.2
23Select seq gnl\|SRA\|SRR7896912.3652625.1	SRX4734343	172	172	1%	5e-39	90.70%	145	SRA:SRR7896912.3652625.1
24Select seq gnl\|SRA\|SRR7896912.1717840.1	SRX4734343	171	171	1%	2e-38	91.87%	150	SRA:SRR7896912.1717840.1
25Select seq gnl\|SRA\|SRR7896912.4505960.2	SRX4734343	169	169	1%	6e-38	88.19%	151	SRA:SRR7896912.4505960.2
26Select seq gnl\|SRA\|SRR7896912.4204275.1	SRX4734343	169	169	1%	6e-38	86.93%	151	SRA:SRR7896912.4204275.1
27Select seq gnl\|SRA\|SRR7896912.3348476.1	SRX4734343	165	165	1%	8e-37	89.47%	151	SRA:SRR7896912.3348476.1
28Select seq gnl\|SRA\|SRR7896912.1748011.1	SRX4734343	165	165	1%	8e-37	89.92%	151	SRA:SRR7896912.1748011.1
29Select seq gnl\|SRA\|SRR7896912.1503678.2	SRX4734343	165	165	1%	8e-37	88.41%	151	SRA:SRR7896912.1503678.2
30Select seq gnl\|SRA\|SRR7896912.801972.1	SRX4734343	165	165	1%	8e-37	90.48%	150	SRA:SRR7896912.801972.1
31Select seq gnl\|SRA\|SRR7896912.3672026.2	SRX4734343	163	163	1%	3e-36	87.16%	151	SRA:SRR7896912.3672026.2
32Select seq gnl\|SRA\|SRR7896912.4204275.2	SRX4734343	161	161	1%	1e-35	88.72%	151	SRA:SRR7896912.4204275.2
33Select seq gnl\|SRA\|SRR7896916.3854156.1	SRX4734343	159	159	1%	4e-35	88.64%	150	SRA:SRR7896916.3854156.1
34Select seq gnl\|SRA\|SRR7896912.4172155.1	SRX4734343	158	158	1%	1e-34	87.23%	149	SRA:SRR7896912.4172155.1
35Select seq gnl\|SRA\|SRR7896912.2757878.1	SRX4734343	158	158	1%	1e-34	85.62%	151	SRA:SRR7896912.2757878.1
36Select seq gnl\|SRA\|SRR7896912.696599.1	SRX4734343	158	158	1%	1e-34	85.62%	151	SRA:SRR7896912.696599.1
37Select seq gnl\|SRA\|SRR7896912.845949.1	SRX4734343	156	156	1%	5e-34	86.71%	151	SRA:SRR7896912.845949.1
38Select seq gnl\|SRA\|SRR7896912.845949.2	SRX4734343	152	152	1%	6e-33	87.05%	151	SRA:SRR7896912.845949.2
39Select seq gnl\|SRA\|SRR7896912.4347469.2	SRX4734343	148	148	1%	8e-32	85.92%	151	SRA:SRR7896912.4347469.2
40Select seq gnl\|SRA\|SRR7896912.2015248.2	SRX4734343	148	148	1%	8e-32	89.66%	147	SRA:SRR7896912.2015248.2
41Select seq gnl\|SRA\|SRR7896912.696599.2	SRX4734343	148	148	1%	8e-32	85.92%	151	SRA:SRR7896912.696599.2
42Select seq gnl\|SRA\|SRR7896912.3957165.2	SRX4734343	145	145	1%	1e-30	86.57%	151	SRA:SRR7896912.3957165.2
43Select seq gnl\|SRA\|SRR7896912.1650223.2	SRX4734343	145	145	1%	1e-30	90.74%	140	SRA:SRR7896912.1650223.2
44Select seq gnl\|SRA\|SRR7896912.4013797.2	SRX4734343	141	141	1%	1e-29	86.36%	149	SRA:SRR7896912.4013797.2
45Select seq gnl\|SRA\|SRR7896912.3743635.2	SRX4734343	141	141	1%	1e-29	85.11%	151	SRA:SRR7896912.3743635.2
46Select seq gnl\|SRA\|SRR7896912.2112018.1	SRX4734343	141	141	1%	1e-29	91.26%	150	SRA:SRR7896912.2112018.1
47Select seq gnl\|SRA\|SRR7896912.1274215.2	SRX4734343	141	141	1%	1e-29	88.33%	143	SRA:SRR7896912.1274215.2
48Select seq gnl\|SRA\|SRR7896912.1274215.1	SRX4734343	141	141	1%	1e-29	88.33%	143	SRA:SRR7896912.1274215.1
49Select seq gnl\|SRA\|SRR7896912.2261114.2	SRX4734343	137	137	1%	2e-28	88.14%	148	SRA:SRR7896912.2261114.2
50Select seq gnl\|SRA\|SRR7896912.2015248.1	SRX4734343	137	137	1%	2e-28	88.50%	147	SRA:SRR7896912.2015248.1
51Select seq gnl\|SRA\|SRR7896912.2906801.2	SRX4734343	135	135	1%	6e-28	89.09%	129	SRA:SRR7896912.2906801.2
52Select seq gnl\|SRA\|SRR7896912.2906801.1	SRX4734343	135	135	1%	6e-28	89.09%	129	SRA:SRR7896912.2906801.1
53Select seq gnl\|SRA\|SRR7896912.1613255.2	SRX4734343	132	132	1%	8e-27	86.29%	150	SRA:SRR7896912.1613255.2
54Select seq gnl\|SRA\|SRR7896916.7909471.2	SRX4734343	130	130	1%	3e-26	88.29%	151	SRA:SRR7896916.7909471.2
55Select seq gnl\|SRA\|SRR7896916.7909252.2	SRX4734343	130	130	1%	3e-26	88.29%	135	SRA:SRR7896916.7909252.2
56Select seq gnl\|SRA\|SRR7896912.3957165.1	SRX4734343	128	128	1%	1e-25	88.68%	151	SRA:SRR7896912.3957165.1
57Select seq gnl\|SRA\|SRR7896912.3793071.2	SRX4734343	128	128	1%	1e-25	89.32%	141	SRA:SRR7896912.3793071.2
58Select seq gnl\|SRA\|SRR7896912.3793071.1	SRX4734343	128	128	1%	1e-25	88.07%	141	SRA:SRR7896912.3793071.1
59Select seq gnl\|SRA\|SRR7896912.1989294.2	SRX4734343	126	126	1%	4e-25	85.83%	138	SRA:SRR7896912.1989294.2
60Select seq gnl\|SRA\|SRR7896912.1989294.1	SRX4734343	126	126	1%	4e-25	85.83%	138	SRA:SRR7896912.1989294.1
61Select seq gnl\|SRA\|SRR7896912.1613402.2	SRX4734343	126	126	1%	4e-25	86.44%	150	SRA:SRR7896912.1613402.2
62Select seq gnl\|SRA\|SRR7896912.1075594.1	SRX4734343	119	119	1%	6e-23	84.13%	147	SRA:SRR7896912.1075594.1
63Select seq gnl\|SRA\|SRR7896912.4092604.1	SRX4734343	117	117	1%	2e-22	81.33%	149	SRA:SRR7896912.4092604.1
64Select seq gnl\|SRA\|SRR7896912.4037434.1	SRX4734343	117	117	1%	2e-22	81.88%	150	SRA:SRR7896912.4037434.1
65Select seq gnl\|SRA\|SRR7896912.2427978.2	SRX4734343	117	117	1%	2e-22	87.25%	151	SRA:SRR7896912.2427978.2
66Select seq gnl\|SRA\|SRR7896916.7909252.1	SRX4734343	113	113	1%	3e-21	85.59%	148	SRA:SRR7896916.7909252.1
67Select seq gnl\|SRA\|SRR7896912.4235127.2	SRX4734343	110	110	0%	4e-20	92.31%	151	SRA:SRR7896912.4235127.2
68Select seq gnl\|SRA\|SRR7896912.2399629.2	SRX4734343	110	110	1%	4e-20	88.17%	120	SRA:SRR7896912.2399629.2
69Select seq gnl\|SRA\|SRR7896912.2399629.1	SRX4734343	110	110	1%	4e-20	88.17%	120	SRA:SRR7896912.2399629.1
70Select seq gnl\|SRA\|SRR7896912.4347469.1	SRX4734343	104	104	0%	2e-18	89.29%	150	SRA:SRR7896912.4347469.1
71Select seq gnl\|SRA\|SRR7896912.1702921.2	SRX4734343	104	104	0%	2e-18	91.03%	148	SRA:SRR7896912.1702921.2
72Select seq gnl\|SRA\|SRR7896912.1803685.2	SRX4734343	102	102	0%	6e-18	89.87%	107	SRA:SRR7896912.1803685.2
73Select seq gnl\|SRA\|SRR7896912.3743635.1	SRX4734343	100	100	1%	2e-17	79.05%	151	SRA:SRR7896912.3743635.1
74Select seq gnl\|SRA\|SRR7896912.353731.2	SRX4734343	100	100	0%	2e-17	91.78%	151	SRA:SRR7896912.353731.2
75Select seq gnl\|SRA\|SRR7896912.1803685.1	SRX4734343	97.1	97.1	0%	3e-16	88.61%	107	SRA:SRR7896912.1803685.1
76Select seq gnl\|SRA\|SRR7896912.1876116.2	SRX4734343	93.5	93.5	0%	4e-15	93.65%	101	SRA:SRR7896912.1876116.2
77Select seq gnl\|SRA\|SRR7896912.1876116.1	SRX4734343	93.5	93.5	0%	4e-15	93.65%	101	SRA:SRR7896912.1876116.1
78Select seq gnl\|SRA\|SRR7896912.3672026.1	SRX4734343	91.6	91.6	0%	1e-14	86.75%	150	SRA:SRR7896912.3672026.1
79Select seq gnl\|SRA\|SRR7896912.3567727.2	SRX4734343	65.8	65.8	0%	8e-07	91.49%	70	SRA:SRR7896912.3567727.2
80Select seq gnl\|SRA\|SRR7896912.3567727.1	SRX4734343	65.8	65.8	0%	8e-07	91.49%	70	SRA:SRR7896912.3567727.1
81Select seq gnl\|SRA\|SRR7896912.3529877.2	SRX4734343	56.5	56.5	0%	5e-04	88.89%	61	SRA:SRR7896912.3529877.2
82Select seq gnl\|SRA\|SRR7896912.3529877.1	SRX4734343	56.5	56.5	0%	5e-04	88.89%	61	SRA:SRR7896912.3529877.1

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  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
- 82 sequences selected
- Help
Distribution of the top 82 Blast Hits on 82 subject sequences

Query

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- Alignment view
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  Alignment view: Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
  
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  Line length: Number of letters to show on one line in an alignment.
- 82 sequences selected
- Help
Loading alignment... for sequences gnl|SRA|SRR7896912.4284789.2,gnl|SRA|SRR7896912.2261114.1,gnl|SRA|SRR7896912.353731.1,gnl|SRA|SRR7896912.4277479.1,gnl|SRA|SRR7896912.3359397.2 Reading indexes 1-5
Download Graphics SRA Next Previous Descriptions

SRX4734343
Sequence ID: SRA:SRR7896912.4284789.2Length: 150Number of Matches: 1

Related Information

Range 1: 18 to 150Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

196 bits(106) 3e-46() 125/134(93%) 1/134(0%) Plus/Minus

Features:

Query 1834 TGTTAGCCCAACACAGGAGTGCAACCAAGGAAAGATTCAAAGAAATAAAAGGAACTCGGC 1893 ||||| ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| Sbjct 150 TGTTAACCCAACACAGGAGTGCA-CCAAGGAAAGATTAAAAGAAGTAAAAGGAACTCGGC 92 Query 1894 AAACATAAACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATAAAAAGTATTAGAGGC 1953 ||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 91 AAACACAAACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATTACTAGTATTAGAGGC 32 Query 1954 ACTGCCTGCCCGGT 1967 | |||||||||||| Sbjct 31 AATGCCTGCCCGGT 18

Download Graphics SRA Next Previous Descriptions

SRX4734343
Sequence ID: SRA:SRR7896912.2261114.1Length: 149Number of Matches: 1

Related Information

Range 1: 1 to 148Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

193 bits(104) 4e-45() 135/150(90%) 2/150(1%) Plus/Minus

Features:

Query 584 AAACTCAAAGGACTTGGCGGTGCCTTATATCCTTCTAGAGGAGCCTGTTCTATAATCGAT 643 ||||||||||||||||||||||| | | |||| |||||||||||||||||||||||||| Sbjct 148 AAACTCAAAGGACTTGGCGGTGCTTCACATCCACCTAGAGGAGCCTGTTCTATAATCGAT 89 Query 644 AAACCCCGATACACCTCACCAATTCTTGCTTAAATCAGCCTATATACCGCCATCTTCAGC 703 ||||||||||| |||| ||||| ||||| || |||||||||||||||||||||||||| Sbjct 88 AAACCCCGATAGACCTTACCAACCCTTGC-CAATTCAGCCTATATACCGCCATCTTCAGC 30 Query 704 AAACCCTAATAAAGGAAATATAGTAAGCAC 733 ||||||||| ||||||| ||||||||||| Sbjct 29 AAACCCTAA-AAAGGAACAATAGTAAGCAC 1

Download Graphics SRA Next Previous Descriptions

SRX4734343
Sequence ID: SRA:SRR7896912.353731.1Length: 150Number of Matches: 1

Related Information

Range 1: 2 to 150Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

189 bits(102) 5e-44() 136/152(89%) 3/152(1%) Plus/Plus

Features:

Query 580 CTAGAAACTCAAAGGACTTGGCGGTGCCTTATATCCTTCTAGAGGAGCCTGTTCTATAAT 639 ||| ||||||||||||||||||||||| | | |||| |||||||||||||||||||||| Sbjct 2 CTA-AAACTCAAAGGACTTGGCGGTGCTTCACATCCACCTAGAGGAGCCTGTTCTATAAT 60 Query 640 CGATAAACCCCGATACACCTCACCAATTCTTGCTTAAATCAGCCTATATACCGCCATCTT 699 ||||||||||||||| |||| ||||| ||||| || |||||||||||||||||||||| Sbjct 61 CGATAAACCCCGATAGACCTTACCAACCCTTGC-CAATTCAGCCTATATACCGCCATCTT 119 Query 700 CAGCAAACCCTAATAAAGGAAATATAGTAAGC 731 ||||||||||||| ||||||| ||||||||| Sbjct 120 CAGCAAACCCTAA-AAAGGAACAATAGTAAGC 150

Download Graphics SRA Next Previous Descriptions

SRX4734343
Sequence ID: SRA:SRR7896912.4277479.1Length: 150Number of Matches: 1

Related Information

Range 1: 1 to 145Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

187 bits(101) 2e-43() 132/147(90%) 2/147(1%) Plus/Plus

Features:

Query 589 CAAAGGACTTGGCGGTGCCTTATATCCTTCTAGAGGAGCCTGTTCTATAATCGATAAACC 648 |||||||||||||||||| | | |||| ||||||||||||||||||||||||||||||| Sbjct 1 CAAAGGACTTGGCGGTGCTTCACATCCACCTAGAGGAGCCTGTTCTATAATCGATAAACC 60 Query 649 CCGATACACCTCACCAATTCTTGCTTAAATCAGCCTATATACCGCCATCTTCAGCAAACC 708 |||||| |||| ||||| ||||| || ||||||||||||||||||||||||||||||| Sbjct 61 CCGATAGACCTTACCAACCCTTGC-CAATTCAGCCTATATACCGCCATCTTCAGCAAACC 119 Query 709 CTAATAAAGGAAATATAGTAAGCACAA 735 |||| ||||||| ||||||||||||| Sbjct 120 CTAA-AAAGGAACAATAGTAAGCACAA 145

Download Graphics SRA Next Previous Descriptions

SRX4734343
Sequence ID: SRA:SRR7896912.3359397.2Length: 150Number of Matches: 1

Related Information

Range 1: 17 to 150Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

187 bits(101) 2e-43() 123/134(92%) 0/134(0%) Plus/Plus

Features:

Query 204 GCTCATAACACCTTGCTCAGCCACACCCCCACGGGAAACAGCAGTGATAAAAATTAAGCA 263 ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 17 GCTCATAACGCCTTGCTCAACCACACCCCCACGGGAAACAGCAGTGATAAAAATTAAGCC 76 Query 264 ATAAATGAAAGTCTGACTAAGTTATATTACTAAGGACTGGTAAATCTCGTGCCAGCCACC 323 || || |||||| |||||||||||||||| | || ||||||||||||||||||||||| Sbjct 77 ATGAACGAAAGTTTGACTAAGTTATATTAATTAGAGTTGGTAAATCTCGTGCCAGCCACC 136 Query 324 GCGGTCATACGATT 337 |||||||||||||| Sbjct 137 GCGGTCATACGATT 150
Reports
- 82 sequences selected
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Distribution of the top 82 Blast Hits on 82 subject sequences

Important update

Thank you for using ClusteredNR

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Sequences producing significant alignments