(cache)NCBI Blast:ref|NZ

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Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	100
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Jun 4, 2025 5:11 PM
Number of letters	2,623,607,469,921
Number of sequences	115,666,519
Entrez query	Includes: Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	37
Effective length of query	355
Effective length of database	2619327808718
Effective search space	929861372094890
Effective search space used	929861372094890

Job Title

ref|NZ_NRJO01000084.1| ...

RID

4DRR7A3H013 Search expires on 06-10 21:17 pm

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Program

BLASTN

Citation

Database

See details

Title:Nucleotide collection (nt)
Description:The nucleotide collection consists of GenBank+EMBL+DDBJ+PDB+RefSeq sequences, but excludes EST, STS, GSS, WGS, TSA, patent sequences as well as phase 0, 1, and 2 HTGS sequences and sequences longer than 100Mb. The database is non-redundant. Identical sequences have been merged into one entry, while preserving the accession, GI, title and taxonomy information for each entry.
Molecule Type:mixed DNA
Update date:2025/06/08
Number of sequences:115666519

Query ID

NZ_NRJO01000084.1

Description

Cronobacter sakazakii strain cro3040W contig84, whole genome shotgun sequence ...

Molecule type

dna

Query Length

392

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Distance tree of results MSA viewer

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100 sequences selected

, Reading indexes 1-5, displaying indexes 1-5, Reading indexes 6-10, displaying indexes 6-10

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq KF818691.1	HIV-1 isolate JL100068 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	643	643	99%	2e-179	96.15%	626	KF818691.1
2Select seq HM215424.1	HIV-1 isolate CNE62 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	628	628	100%	4e-175	95.65%	2538	HM215424.1
3Select seq KF818675.1	HIV-1 isolate JL100047 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	625	625	97%	5e-174	96.32%	494	KF818675.1
4Select seq MH672924.1	HIV-1 isolate 252_A6 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	623	623	100%	2e-173	95.40%	2550	MH672924.1
5Select seq KF818781.1	HIV-1 isolate JL.RF09 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	623	623	100%	2e-173	95.40%	509	KF818781.1
6Select seq JX112808.1	HIV-1 isolate CYM154 from China gag protein (gag) gene, complete cds; nonfunctional pol protein (pol) gene, partial sequence; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	623	623	100%	2e-173	95.40%	9018	JX112808.1
7Select seq JQ900981.1	HIV-1 isolate 2846 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	623	623	100%	2e-173	95.40%	509	JQ900981.1
8Select seq HQ215559.1	HIV-1 isolate 1105 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	623	623	100%	2e-173	95.40%	519	HQ215559.1
9Select seq HQ699987.1	HIV-1 isolate CNE61.U from China envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	623	623	100%	2e-173	95.40%	2538	HQ699987.1
10Select seq MH672936.1	HIV-1 isolate 252_F8 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	617	617	100%	9e-172	95.14%	2550	MH672936.1
11Select seq MH672932.1	HIV-1 isolate 252_D8 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	617	617	100%	9e-172	95.14%	2550	MH672932.1
12Select seq MH672931.1	HIV-1 isolate 252_D7 from China nonfunctional envelope glycoprotein (env) gene, complete sequence; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	617	617	100%	9e-172	95.14%	2537	MH672931.1
13Select seq MH672927.1	HIV-1 isolate 252_C5 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	617	617	100%	9e-172	95.14%	2550	MH672927.1
14Select seq MH672926.1	HIV-1 isolate 252_C4 from China nonfunctional envelope glycoprotein (env) gene, partial sequence; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	617	617	100%	9e-172	95.14%	2448	MH672926.1
15Select seq MH672925.1	HIV-1 isolate 252_C3 from China nonfunctional envelope glycoprotein (env) gene, partial sequence; and vpu protein (vpu) gene, partial cds	Human immunodeficiency virus 1	NA	11676	617	617	100%	9e-172	95.14%	1923	MH672925.1
16Select seq JX112797.1	HIV-1 isolate CYM075 from China nonfunctional gag protein (gag) gene, complete sequence; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; and rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	617	617	100%	9e-172	95.14%	9082	JX112797.1
17Select seq HQ215564.1	HIV-1 isolate 1115 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	617	617	100%	9e-172	95.14%	519	HQ215564.1
18Select seq HQ215560.1	HIV-1 isolate 1107 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	617	617	100%	9e-172	95.14%	519	HQ215560.1
19Select seq MH672937.1	HIV-1 isolate 252_F9 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	612	612	100%	4e-170	94.88%	2550	MH672937.1
20Select seq MH672928.1	HIV-1 isolate 252_C9 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	612	612	100%	4e-170	94.88%	2550	MH672928.1
21Select seq MH672923.1	HIV-1 isolate 252_A1 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	612	612	100%	4e-170	94.88%	2550	MH672923.1
22Select seq HQ215555.1	HIV-1 isolate 1109 from China, partial genome	Human immunodeficiency virus 1	NA	11676	612	612	100%	4e-170	94.88%	8831	HQ215555.1
23Select seq KJ184180.1	HIV-1 isolate JL.RF09 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	610	610	99%	2e-169	94.87%	8923	KJ184180.1
24Select seq KM217832.1	HIV-1 isolate BJOX015000.e33 from China pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nonfunctional nef protein (nef) gene, complete sequence	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4661	KM217832.1
25Select seq KM217831.1	HIV-1 isolate BJOX015000.e32 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217831.1
26Select seq KM217830.1	HIV-1 isolate BJOX015000.e31 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217830.1
27Select seq KM217829.1	HIV-1 isolate BJOX015000.e30 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217829.1
28Select seq KM217826.1	HIV-1 isolate BJOX015000.e27 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217826.1
29Select seq KM217822.1	HIV-1 isolate BJOX015000.e23 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217822.1
30Select seq KM217820.1	HIV-1 isolate BJOX015000.e18 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217820.1
31Select seq KM217819.1	HIV-1 isolate BJOX015000.e17 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217819.1
32Select seq KM217818.1	HIV-1 isolate BJOX015000.e16 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217818.1
33Select seq KM217816.1	HIV-1 isolate BJOX015000.e14 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217816.1
34Select seq KM217815.1	HIV-1 isolate BJOX015000.e13 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217815.1
35Select seq KM217814.1	HIV-1 isolate BJOX015000.e12 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217814.1
36Select seq KM217813.1	HIV-1 isolate BJOX015000.e11 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217813.1
37Select seq KM217812.1	HIV-1 isolate BJOX015000.e10 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217812.1
38Select seq KM217811.1	HIV-1 isolate BJOX015000.e09 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217811.1
39Select seq KM217809.1	HIV-1 isolate BJOX015000.e07 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217809.1
40Select seq KM217808.1	HIV-1 isolate BJOX015000.e06 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217808.1
41Select seq KM217806.1	HIV-1 isolate BJOX015000.e03 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217806.1
42Select seq KM217805.1	HIV-1 isolate BJOX015000.e02 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217805.1
43Select seq KM217804.1	HIV-1 isolate BJOX015000.e01 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	4663	KM217804.1
44Select seq KF818737.1	HIV-1 isolate JL110041 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	608	608	99%	6e-169	94.86%	503	KF818737.1
45Select seq HM215377.1	HIV-1 isolate BJOX015000.11.5 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	608	608	100%	6e-169	94.67%	2559	HM215377.1
46Select seq MH672935.1	HIV-1 isolate 252_F5 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	606	606	100%	2e-168	94.63%	2550	MH672935.1
47Select seq MH672934.1	HIV-1 isolate 252_E3 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	606	606	100%	2e-168	94.63%	2586	MH672934.1
48Select seq MH672933.1	HIV-1 isolate 252_E12 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	606	606	100%	2e-168	94.63%	2556	MH672933.1
49Select seq MH672929.1	HIV-1 isolate 252_D3 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	606	606	100%	2e-168	94.63%	2556	MH672929.1
50Select seq HQ215566.1	HIV-1 isolate 1117 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	606	606	100%	2e-168	94.63%	519	HQ215566.1
51Select seq GU475024.1	HIV-1 isolate BJ5.11 from China envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	606	606	100%	2e-168	94.63%	2544	GU475024.1
52Select seq KM217828.1	HIV-1 isolate BJOX015000.e29 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	4663	KM217828.1
53Select seq KM217825.1	HIV-1 isolate BJOX015000.e26 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	4663	KM217825.1
54Select seq KM217817.1	HIV-1 isolate BJOX015000.e15 from China pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), and rev protein (rev) genes, complete cds; nonfunctional vpu protein (vpu) gene, complete sequence; and envelope glycoprotein (env) and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	4661	KM217817.1
55Select seq KM217810.1	HIV-1 isolate BJOX015000.e08 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	4663	KM217810.1
56Select seq KM217807.1	HIV-1 isolate BJOX015000.e05 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	4663	KM217807.1
57Select seq KM217709.1	HIV-1 isolate BJOX009000.e20 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	2541	KM217709.1
58Select seq KM217703.1	HIV-1 isolate BJOX009000.e14 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	2547	KM217703.1
59Select seq KM217702.1	HIV-1 isolate BJOX009000.e13 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	2547	KM217702.1
60Select seq KM217701.1	HIV-1 isolate BJOX009000.e11 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	2547	KM217701.1
61Select seq KM217700.1	HIV-1 isolate BJOX009000.e10 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	2547	KM217700.1
62Select seq KM217699.1	HIV-1 isolate BJOX009000.e09 from China nonfunctional env protein (env) gene, complete sequence; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	2545	KM217699.1
63Select seq KM217698.1	HIV-1 isolate BJOX009000.e08 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	2547	KM217698.1
64Select seq KM217697.1	HIV-1 isolate BJOX009000.e06 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	2547	KM217697.1
65Select seq KM217696.1	HIV-1 isolate BJOX009000.e05 from China vpr protein (vpr) gene, partial cds; tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	3337	KM217696.1
66Select seq KM217695.1	HIV-1 isolate BJOX009000.e04 from China vpr protein (vpr) gene, partial cds; tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	3365	KM217695.1
67Select seq KM217694.1	HIV-1 isolate BJOX009000.e03 from China vpr protein (vpr) gene, partial cds; tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; nonfunctional env protein (env) gene, complete sequence; and nef protein (nef) gene, partial cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	3437	KM217694.1
68Select seq KM217693.1	HIV-1 isolate BJOX009000.e02 from China tat protein (tat) gene, partial cds; and rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	2825	KM217693.1
69Select seq KM217692.1	HIV-1 isolate BJOX009000.e01 from China vpr protein (vpr) and vif protein (vif) genes, partial cds; tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	3424	KM217692.1
70Select seq HQ215565.1	HIV-1 isolate 1116 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.37%	519	HQ215565.1
71Select seq HM215372.1	HIV-1 isolate BJOX009000.02.4 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	603	603	100%	3e-167	94.42%	2547	HM215372.1
72Select seq MH672749.1	HIV-1 isolate 194_D9 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	601	601	100%	9e-167	94.37%	2544	MH672749.1
73Select seq MH672741.1	HIV-1 isolate 194_B1 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	601	601	100%	9e-167	94.37%	2544	MH672741.1
74Select seq MN617372.1	HIV-1 isolate BJYA2.1.1 envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	601	601	100%	9e-167	94.37%	2544	MN617372.1
75Select seq JX112859.1	HIV-1 isolate TJ070003 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	601	601	100%	9e-167	94.37%	9091	JX112859.1
76Select seq JQ901008.1	HIV-1 isolate 2879 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	601	601	100%	9e-167	94.37%	509	JQ901008.1
77Select seq KM217707.1	HIV-1 isolate BJOX009000.e18 from China nonfunctional env protein (env) gene, complete sequence; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	599	599	100%	3e-166	94.18%	2548	KM217707.1
78Select seq MK703363.1	HIV-1 isolate HLJ15035 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	597	597	100%	1e-165	94.16%	510	MK703363.1
79Select seq MK703048.1	HIV-1 isolate HLJ11058 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	597	597	100%	1e-165	94.16%	510	MK703048.1
80Select seq KM217706.1	HIV-1 isolate BJOX009000.e17 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	597	597	100%	1e-165	94.16%	2547	KM217706.1
81Select seq KX583472.1	HIV-1 isolate hivenv67 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	595	595	100%	4e-165	93.61%	521	KX583472.1
82Select seq KM218131.1	HIV-1 isolate BJOX031000.e27 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	595	595	100%	4e-165	94.12%	2544	KM218131.1
83Select seq KX583478.1	HIV-1 isolate hivenv73 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	593	593	100%	2e-164	93.86%	521	KX583478.1
84Select seq KX583425.1	HIV-1 isolate hivenv10 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	593	593	100%	2e-164	93.61%	514	KX583425.1
85Select seq MK703079.1	HIV-1 isolate HLJ12016 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	592	592	100%	6e-164	93.91%	510	MK703079.1
86Select seq KM218136.1	HIV-1 isolate BJOX031000.e34 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	590	590	100%	2e-163	93.86%	2544	KM218136.1
87Select seq KM218135.1	HIV-1 isolate BJOX031000.e32 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	590	590	100%	2e-163	93.86%	2544	KM218135.1
88Select seq KM218134.1	HIV-1 isolate BJOX031000.e31 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	590	590	100%	2e-163	93.86%	2544	KM218134.1
89Select seq KM218133.1	HIV-1 isolate BJOX031000.e29 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	590	590	100%	2e-163	93.86%	2544	KM218133.1
90Select seq KM218132.1	HIV-1 isolate BJOX031000.e28 from China envelope glycoprotein (env) gene, complete cds; vpu protein (vpu) and rev protein (rev) genes, partial cds; and nonfunctional tat protein (tat) gene, partial sequence	Human immunodeficiency virus 1	NA	11676	590	590	100%	2e-163	93.86%	2544	KM218132.1
91Select seq KM218128.1	HIV-1 isolate BJOX031000.e23 from China envelope glycoprotein (env) gene, complete cds; vpu protein (vpu) and rev protein (rev) genes, partial cds; and nonfunctional tat protein (tat) gene, partial sequence	Human immunodeficiency virus 1	NA	11676	590	590	100%	2e-163	93.86%	2544	KM218128.1
92Select seq KM218127.1	HIV-1 isolate BJOX031000.e21 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	590	590	100%	2e-163	93.86%	2544	KM218127.1
93Select seq KM218126.1	HIV-1 isolate BJOX031000.e20 from China envelope glycoprotein (env) gene, complete cds; vpu protein (vpu) gene, partial cds; nonfunctional rev protein (rev) gene, partial sequence; and tat protein (tat) gene, partial cds	Human immunodeficiency virus 1	NA	11676	590	590	100%	2e-163	93.86%	2543	KM218126.1
94Select seq KM218125.1	HIV-1 isolate BJOX031000.e19 from China nonfunctional env protein (env) gene, complete sequence; vpu protein (vpu) and rev protein (rev) genes, partial cds; and nonfunctional tat protein (tat) gene, partial sequence	Human immunodeficiency virus 1	NA	11676	590	590	100%	2e-163	93.86%	2542	KM218125.1
95Select seq KM218124.1	HIV-1 isolate BJOX031000.e17 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	590	590	100%	2e-163	93.86%	2544	KM218124.1
96Select seq KM218120.1	HIV-1 isolate BJOX031000.e12 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	590	590	100%	2e-163	93.86%	2544	KM218120.1
97Select seq KM218119.1	HIV-1 isolate BJOX031000.e11 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	590	590	100%	2e-163	93.86%	2544	KM218119.1
98Select seq KM218113.1	HIV-1 isolate BJOX031000.e01 from China vpr protein (vpr) gene, partial cds; tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds	Human immunodeficiency virus 1	NA	11676	590	590	100%	2e-163	93.86%	3262	KM218113.1
99Select seq JQ900976.1	HIV-1 isolate 2841 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	590	590	100%	2e-163	93.86%	509	JQ900976.1
100Select seq JQ900970.1	HIV-1 isolate 2835 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	590	590	100%	2e-163	93.91%	509	JQ900970.1

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  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
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Distribution of the top 100 Blast Hits on 100 subject sequences

Query

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Alignments

100 sequences selected
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HIV-1 isolate JL100068 from China envelope glycoprotein (env) gene, partial cds

Sequence ID: KF818691.1Length: 626Number of Matches: 1

Range 1: 115 to 504GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
643 bits(348)	2e-179()	375/390(96%)	0/390(0%)	Plus/Plus

Query  1    AGACCCACCAACAATACAAGAAAAAGTATAAGAATAGGACCAGGCCAAATGTTCTATAGA  60
            |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  115  AGACCCTCCAACAATACAAGAAAAAGTACAAGAATAGGACCAGGCCAAATGTTCTATAGA  174

Query  61   ACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTGAGGTTAATGGAACAGAATGG  120
            ||||||||||||||||||||||||||  ||||| |||||||| |||||||||||||||||
Sbjct  175  ACAGGAGACATAATAGGAGATATAAGGAAAGCATATTGTGAGATTAATGGAACAGAATGG  234

Query  121  AATGAAACTTTAAAGCAGGTAACTAAAAAATTAAAAGAGTACTTCAATAAGACAATAGTC  180
            | ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||
Sbjct  235  ARTGAAACTTTAAAGCAGGTAACTAAAAAATTAAAAGAGCACTTTAATAMGACAATAGTC  294

Query  181  TTTCGACCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  240
            |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  295  TTTCAACCACCCTCAGGAGGAGATCTAGAAACTACAATGCATCATTTTAATTGTAGAGGG  354

Query  241  GAATTTTTCTATTGCAATACAACAAACTTGTTTAATAGTACAGAAAATGGAACCATGGAG  300
            |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct  355  GAATTTTTCTATTGCAATACAACAAAATTGTTTAATAGTACAGAAAATGRAACCATGGAG  414

Query  301  GGGCTTAATACCACTATCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  415  GGGCTTAATACCACTATCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  474

Query  361  GGAGTAGGACAAGCAATGTATGCCCCTCCC  390
            ||||||||||||||||||||||| ||||||
Sbjct  475  GGAGTAGGACAAGCAATGTATGCTCCTCCC  504

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HIV-1 isolate CNE62 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds

Sequence ID: HM215424.1Length: 2538Number of Matches: 1

Range 1: 880 to 1270GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
628 bits(340)	4e-175()	374/391(96%)	0/391(0%)	Plus/Plus

Query  1     AGACCCACCAACAATACAAGAAAAAGTATAAGAATAGGACCAGGCCAAATGTTCTATAGA  60
             |||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  880   AGACCCTCCAACAATACAAGAACAAGTATAAGAATAGGACCAGGCCAAACGTTCTATAGA  939

Query  61    ACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTGAGGTTAATGGAACAGAATGG  120
             ||||||||||||||||||||||||||  ||||| |||||||| |||||||||||||||||
Sbjct  940   ACAGGAGACATAATAGGAGATATAAGGAAAGCATATTGTGAGATTAATGGAACAGAATGG  999

Query  121   AATGAAACTTTAAAGCAGGTAACTAAAAAATTAAAAGAGTACTTCAATAAGACAATAGTC  180
             |||||||||||||| ||||||||| ||||||||||| || |||| |||||||||||||||
Sbjct  1000  AATGAAACTTTAAATCAGGTAACTGAAAAATTAAAAAAGCACTTTAATAAGACAATAGTC  1059

Query  181   TTTCGACCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  240
             ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1060  TTTCAGCCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  1119

Query  241   GAATTTTTCTATTGCAATACAACAAACTTGTTTAATAGTACAGAAAATGGAACCATGGAG  300
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1120  GAATTTTTCTATTGCAATACAACAAAATTGTTTAATAGTACAGAAAATGGAACCATGGAG  1179

Query  301   GGGCTTAATACCACTATCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  360
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1180  GGGTTTAATACCACTATCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  1239

Query  361   GGAGTAGGACAAGCAATGTATGCCCCTCCCA  391
             ||||||||||||||||||||||| |||||||
Sbjct  1240  GGAGTAGGACAAGCAATGTATGCTCCTCCCA  1270

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HIV-1 isolate JL100047 from China envelope glycoprotein (env) gene, partial cds

Sequence ID: KF818675.1Length: 494Number of Matches: 1

Range 1: 115 to 494GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
625 bits(338)	5e-174()	366/380(96%)	0/380(0%)	Plus/Plus

Query  1    AGACCCACCAACAATACAAGAAAAAGTATAAGAATAGGACCAGGCCAAATGTTCTATAGA  60
            |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  115  AGACCCTCCAACAATACAAGAAAAAGTACAAGAATAGGACCAGGCCAAATGTTCTATAGA  174

Query  61   ACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTGAGGTTAATGGAACAGAATGG  120
            ||||||||||||||||||||||||||  ||||| |||||||| |||||||||||||||||
Sbjct  175  ACAGGAGACATAATAGGAGATATAAGGAAAGCATATTGTGAGATTAATGGAACAGAATGG  234

Query  121  AATGAAACTTTAAAGCAGGTAACTAAAAAATTAAAAGAGTACTTCAATAAGACAATAGTC  180
            ||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct  235  AATGAAACTATAAAGCAGGTAACTAAAAAATTAAAAGAGCACTTTAATAAGACAATAATC  294

Query  181  TTTCGACCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  240
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  295  TTTCAACCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  354

Query  241  GAATTTTTCTATTGCAATACAACAAACTTGTTTAATAGTACAGAAAATGGAACCATGGAG  300
            |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct  355  GAATTTTTCTATTGCAATACAACAAAATTGTTTAATAGTACACAAAATGGAACCATGGAG  414

Query  301  GGGCTTAATACCACTATCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  360
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  415  GGGCTTAATACCACTACCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  474

Query  361  GGAGTAGGACAAGCAATGTA  380
            ||||||||||||||||||||
Sbjct  475  GGAGTAGGACAAGCAATGTA  494

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HIV-1 isolate 252_A6 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds

Sequence ID: MH672924.1Length: 2550Number of Matches: 1

Range 1: 895 to 1285GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
623 bits(337)	2e-173()	373/391(95%)	0/391(0%)	Plus/Plus

Query  1     AGACCCACCAACAATACAAGAAAAAGTATAAGAATAGGACCAGGCCAAATGTTCTATAGA  60
             |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  895   AGACCCTCCAACAATACAAGAAAAAGTACAAGAATAGGACCAGGCCAAATGTTCTATAGA  954

Query  61    ACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTGAGGTTAATGGAACAGAATGG  120
             ||||||||||||||||||||||||||  ||||| |||||||| |||||||||||||||||
Sbjct  955   ACAGGAGACATAATAGGAGATATAAGGAAAGCATATTGTGAGATTAATGGAACAGAATGG  1014

Query  121   AATGAAACTTTAAAGCAGGTAACTAAAAAATTAAAAGAGTACTTCAATAAGACAATAGTC  180
             ||||||||||||||||||||| ||  |||||||||||||  ||| |||||||||||||||
Sbjct  1015  AATGAAACTTTAAAGCAGGTAGCTGGAAAATTAAAAGAGAGCTTTAATAAGACAATAGTC  1074

Query  181   TTTCGACCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  240
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1075  TTTCAACCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  1134

Query  241   GAATTTTTCTATTGCAATACAACAAACTTGTTTAATAGTACAGAAAATGGAACCATGGAG  300
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1135  GAATTTTTCTATTGCAATACAACAAAATTGTTTAATAGTACAGAAAATGGAACCATGGAG  1194

Query  301   GGGCTTAATACCACTATCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  360
             ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1195  GGGTTTAATACCACTATCATAATTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  1254

Query  361   GGAGTAGGACAAGCAATGTATGCCCCTCCCA  391
             ||||||||||||||||| ||||| |||||||
Sbjct  1255  GGAGTAGGACAAGCAATATATGCTCCTCCCA  1285

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HIV-1 isolate JL.RF09 from China envelope glycoprotein (env) gene, partial cds

Sequence ID: KF818781.1Length: 509Number of Matches: 1

Range 1: 115 to 505GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
623 bits(337)	2e-173()	373/391(95%)	0/391(0%)	Plus/Plus

Query  1    AGACCCACCAACAATACAAGAAAAAGTATAAGAATAGGACCAGGCCAAATGTTCTATAGA  60
            |||||| || |||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct  115  AGACCCTCCGACAATAGAAGAGAAAGTATAAGAATAGGACCAGGCCAAATGTTCTATAGA  174

Query  61   ACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTGAGGTTAATGGAACAGAATGG  120
            ||||||||||||||||||||||||||   ||||| ||||||| |||||||||||||||||
Sbjct  175  ACAGGAGACATAATAGGAGATATAAGGAGAGCACGTTGTGAGATTAATGGAACAGAATGG  234

Query  121  AATGAAACTTTAAAGCAGGTAACTAAAAAATTAAAAGAGTACTTCAATAAGACAATAGTC  180
            ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct  235  AATGAAACTTTAAAGCAGGTAACTAAAAAATTAAAAGAGCACTTTAATAAGACAATAGTC  294

Query  181  TTTCGACCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  240
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  295  TTTCAACCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  354

Query  241  GAATTTTTCTATTGCAATACAACAAACTTGTTTAATAGTACAGAAAATGGAACCATGGAG  300
            |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||
Sbjct  355  GAATTTTTCTATTGCAATACAACACAATTGTTTAATAGTACAGAAAATGGAACCATGAAG  414

Query  301  GGGCTTAATACCACTATCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  360
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  415  GGGCTTAATACCACTGTCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAA  474

Query  361  GGAGTAGGACAAGCAATGTATGCCCCTCCCA  391
            ||||||||||||||||||||||| |||||||
Sbjct  475  GGAGTAGGACAAGCAATGTATGCTCCTCCCA  505

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HIV-1 isolate CYM154 from China gag protein (gag) gene, complete cds; nonfunctional pol protein (pol) gene, partial sequence; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds

Sequence ID: JX112808.1Length: 9018Number of Matches: 1

Range 1: 6600 to 6990GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
623 bits(337)	2e-173()	373/391(95%)	0/391(0%)	Plus/Plus

Query  1     AGACCCACCAACAATACAAGAAAAAGTATAAGAATAGGACCAGGCCAAATGTTCTATAGA  60
             |||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct  6600  AGACCCTCCAACAATACAAGAACAAGTATAAGAATAGGACCAGGCCAGATGTTCTATAGA  6659

Query  61    ACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTGAGGTTAATGGAACAGAATGG  120
             ||||||||||||| ||||||||||||  ||||| |||||||| |||||||||||||||||
Sbjct  6660  ACAGGAGACATAACAGGAGATATAAGGAAAGCATATTGTGAGATTAATGGAACAGAATGG  6719

Query  121   AATGAAACTTTAAAGCAGGTAACTAAAAAATTAAAAGAGTACTTCAATAAGACAATAGTC  180
             |||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct  6720  AATGAAACCTTAAATCAGGTAACTAAAAAATTAAAACAGTACTTTAATAAGACAATAGTC  6779

Query  181   TTTCGACCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  240
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  6780  TTTCGACCACCCTCAGGAGGAGATCTAGAAACTACAATGCATCATTTTAATTGTAGAGGG  6839

Query  241   GAATTTTTCTATTGCAATACAACAAACTTGTTTAATAGTACAGAAAATGGAACCATGGAG  300
             |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct  6840  GAATTTTTCTATTGCAATACAACAAAATTGTTTAATAGTACAGACAATGGAACCATGGAG  6899

Query  301   GGGCTTAATACCACTATCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  360
             ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  6900  GGGTTTAATACCACTATCACACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  6959

Query  361   GGAGTAGGACAAGCAATGTATGCCCCTCCCA  391
             ||||||||||||||||||||||| |||||||
Sbjct  6960  GGAGTAGGACAAGCAATGTATGCTCCTCCCA  6990

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HIV-1 isolate 2846 from China envelope glycoprotein (env) gene, partial cds

Sequence ID: JQ900981.1Length: 509Number of Matches: 1

Range 1: 115 to 505GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
623 bits(337)	2e-173()	373/391(95%)	0/391(0%)	Plus/Plus

Query  1    AGACCCACCAACAATACAAGAAAAAGTATAAGAATAGGACCAGGCCAAATGTTCTATAGA  60
            |||||| ||||||||||||||| ||||| ||||||||||||||| ||| |||||||||||
Sbjct  115  AGACCCTCCAACAATACAAGAACAAGTACAAGAATAGGACCAGGTCAAGTGTTCTATAGA  174

Query  61   ACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTGAGGTTAATGGAACAGAATGG  120
            ||||||||||||||||||||||||||  ||||| |||||||| |||||||||||||||||
Sbjct  175  ACAGGAGACATAATAGGAGATATAAGGAAAGCATATTGTGAGATTAATGGAACAGAATGG  234

Query  121  AATGAAACTTTAAAGCAGGTAACTAAAAAATTAAAAGAGTACTTCAATAAGACAATAGTC  180
            ||| |||||||| ||||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct  235  AATAAAACTTTACAGCAGGTAACTGAAAAATTAAAAGAGCACTTTAATAAGACAATAGTC  294

Query  181  TTTCGACCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  240
            |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  295  TTTCAACCACCCTCAGGAGGAGATCTAGAAACTACAATGCATCATTTTAATTGTAGAGGG  354

Query  241  GAATTTTTCTATTGCAATACAACAAACTTGTTTAATAGTACAGAAAATGGAACCATGGAG  300
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  355  GAATTTTTCTATTGCAATACAACAAAATTGTTTAATAGTACAGAAAATGGAACCATGGAG  414

Query  301  GGGCTTAATACCACTATCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  360
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  415  GGGTTTAATACCACTATCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  474

Query  361  GGAGTAGGACAAGCAATGTATGCCCCTCCCA  391
            |||||||||||||||||||||||||||||||
Sbjct  475  GGAGTAGGACAAGCAATGTATGCCCCTCCCA  505

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HIV-1 isolate 1105 from China envelope glycoprotein (env) gene, partial cds

Sequence ID: HQ215559.1Length: 519Number of Matches: 1

Range 1: 121 to 511GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
623 bits(337)	2e-173()	373/391(95%)	0/391(0%)	Plus/Plus

Query  1    AGACCCACCAACAATACAAGAAAAAGTATAAGAATAGGACCAGGCCAAATGTTCTATAGA  60
            |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  121  AGACCCTCCAACAATACAAGAACAAGTATAAGAATAGGACCAGGCCAAATGTTCTATAGA  180

Query  61   ACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTGAGGTTAATGGAACAGAATGG  120
            |||||||| |||||||||||||||||  ||||| |||||||| |||||||||||||||||
Sbjct  181  ACAGGAGARATAATAGGAGATATAAGGAAAGCATATTGTGAGATTAATGGAACAGAATGG  240

Query  121  AATGAAACTTTAAAGCAGGTAACTAAAAAATTAAAAGAGTACTTCAATAAGACAATAGTC  180
            |||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||
Sbjct  241  AATGAAACTTTAAATCAGGTAACTAAAAAATTAAAAGAGAACTTTAATAAGACAATAGTC  300

Query  181  TTTCGACCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  240
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TTTAGACCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  360

Query  241  GAATTTTTCTATTGCAATACAACAAACTTGTTTAATAGTACAGAAAATGGAACCATGGAG  300
            |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct  361  GAATTTTTCTATTGCAATACAACAAAATTGTTTAATAGGACAGAAAATGAAACCATGGAG  420

Query  301  GGGCTTAATACCACTATCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  360
            |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  GGGTCTAATACCACTATCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  480

Query  361  GGAGTAGGACAAGCAATGTATGCCCCTCCCA  391
            ||||||||||||||||||||| | |||||||
Sbjct  481  GGAGTAGGACAAGCAATGTATACTCCTCCCA  511

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HIV-1 isolate CNE61.U from China envelope glycoprotein (env) gene, complete cds

Sequence ID: HQ699987.1Length: 2538Number of Matches: 1

Range 1: 880 to 1270GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
623 bits(337)	2e-173()	373/391(95%)	0/391(0%)	Plus/Plus

Query  1     AGACCCACCAACAATACAAGAAAAAGTATAAGAATAGGACCAGGCCAAATGTTCTATAGA  60
             |||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  880   AGACCCTCCAACAATACAAGAACAAGTATAAGAATAGGACCAGGCCAAACGTTCTATAGA  939

Query  61    ACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTGAGGTTAATGGAACAGAATGG  120
             || |||||||||||||||||||||||  ||||| |||||||| |||||||||||||||||
Sbjct  940   ACGGGAGACATAATAGGAGATATAAGGAAAGCATATTGTGAGATTAATGGAACAGAATGG  999

Query  121   AATGAAACTTTAAAGCAGGTAACTAAAAAATTAAAAGAGTACTTCAATAAGACAATAGTC  180
             |||||||||||||| ||||||||| ||||||||||| || |||| |||||||||||||||
Sbjct  1000  AATGAAACTTTAAATCAGGTAACTGAAAAATTAAAAAAGCACTTTAATAAGACAATAGTC  1059

Query  181   TTTCGACCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  240
             ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1060  TTTCAGCCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  1119

Query  241   GAATTTTTCTATTGCAATACAACAAACTTGTTTAATAGTACAGAAAATGGAACCATGGAG  300
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1120  GAATTTTTCTATTGCAATACAACAAAATTGTTTAATAGTACAGAAAATGGAACCATGGAG  1179

Query  301   GGGCTTAATACCACTATCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  360
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1180  GGGTTTAATACCACTATCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  1239

Query  361   GGAGTAGGACAAGCAATGTATGCCCCTCCCA  391
             ||||||||||||||||||||||| |||||||
Sbjct  1240  GGAGTAGGACAAGCAATGTATGCTCCTCCCA  1270

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HIV-1 isolate 252_F8 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds

Sequence ID: MH672936.1Length: 2550Number of Matches: 1

Range 1: 895 to 1285GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
617 bits(334)	9e-172()	372/391(95%)	0/391(0%)	Plus/Plus

Query  1     AGACCCACCAACAATACAAGAAAAAGTATAAGAATAGGACCAGGCCAAATGTTCTATAGA  60
             |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  895   AGACCCTCCAACAATACAAGAAAAAGTACAAGAATAGGACCAGGCCAAATGTTCTATAGA  954

Query  61    ACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTGAGGTTAATGGAACAGAATGG  120
             ||||||||||||||||||||||||||  ||||| |||||||| |||||||||||||||||
Sbjct  955   ACAGGAGACATAATAGGAGATATAAGGAAAGCATATTGTGAGATTAATGGAACAGAATGG  1014

Query  121   AATGAAACTTTAAAGCAGGTAACTAAAAAATTAAAAGAGTACTTCAATAAGACAATAGTC  180
             ||||||||||||||||||||| ||  |||||||||||||  ||| |||||||||||||||
Sbjct  1015  AATGAAACTTTAAAGCAGGTAGCTGGAAAATTAAAAGAGAGCTTTAATAAGACAATAGTC  1074

Query  181   TTTCGACCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  240
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1075  TTTCAACCACCCTCAGGAGGAGATCTAGAAACTACAATGCTTCATTTTAATTGTAGAGGG  1134

Query  241   GAATTTTTCTATTGCAATACAACAAACTTGTTTAATAGTACAGAAAATGGAACCATGGAG  300
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1135  GAATTTTTCTATTGCAATACAACAAAATTGTTTAATAGTACAGAAAATGGAACCATGGAG  1194

Query  301   GGGCTTAATACCACTATCATACTTCCATGCAGGATAAAGCAAATTGTAAATATGTGGCAG  360
             ||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct  1195  GGGTTTAATACCACTATCATAATTCCATGCAAGATAAAGCAAATTGTAAATATGTGGCAG  1254

Query  361   GGAGTAGGACAAGCAATGTATGCCCCTCCCA  391
             ||||||||||||||||| ||||| |||||||
Sbjct  1255  GGAGTAGGACAAGCAATATATGCTCCTCCCA  1285

Taxonomy

100 sequences selected
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Lineage

Lineage Report
Organism	Blast Name	Score	Number of Hits	Description
Human immunodeficiency virus 1	viruses	643	116	Human immunodeficiency virus 1 hits

Organism

Organism Report
Description	Score	E value	Accession
Human immunodeficiency virus 1 [viruses] Next Previous First
HIV-1 isolate JL100068 from China envelope glycoprotein (env) gene, partial cds	643	2e-179	KF818691
HIV-1 isolate CNE62 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	628	4e-175	HM215424
HIV-1 isolate JL100047 from China envelope glycoprotein (env) gene, partial cds	625	5e-174	KF818675
HIV-1 isolate 252_A6 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	623	2e-173	MH672924
HIV-1 isolate JL.RF09 from China envelope glycoprotein (env) gene, partial cds	623	2e-173	KF818781
HIV-1 isolate CYM154 from China gag protein (gag) gene, complete cds; nonfunctional pol protein (pol) gene, partial sequence; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	623	2e-173	JX112808
HIV-1 isolate 2846 from China envelope glycoprotein (env) gene, partial cds	623	2e-173	JQ900981
HIV-1 isolate 1105 from China envelope glycoprotein (env) gene, partial cds	623	2e-173	HQ215559
HIV-1 isolate CNE61.U from China envelope glycoprotein (env) gene, complete cds	623	2e-173	HQ699987
HIV-1 isolate 252_F8 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	617	9e-172	MH672936
HIV-1 isolate 252_D8 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	617	9e-172	MH672932
HIV-1 isolate 252_D7 from China nonfunctional envelope glycoprotein (env) gene, complete sequence; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	617	9e-172	MH672931
HIV-1 isolate 252_C5 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	617	9e-172	MH672927
HIV-1 isolate 252_D6 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	617	9e-172	MH672930
HIV-1 isolate 252_H1 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	617	9e-172	MH672939
HIV-1 isolate 252_H4 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	617	9e-172	MH672940
HIV-1 isolate 252_C4 from China nonfunctional envelope glycoprotein (env) gene, partial sequence; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	617	9e-172	MH672926
HIV-1 isolate 252_C3 from China nonfunctional envelope glycoprotein (env) gene, partial sequence; and vpu protein (vpu) gene, partial cds	617	9e-172	MH672925
HIV-1 isolate CYM075 from China nonfunctional gag protein (gag) gene, complete sequence; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; and rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	617	9e-172	JX112797
HIV-1 isolate 1115 from China envelope glycoprotein (env) gene, partial cds	617	9e-172	HQ215564
HIV-1 isolate 1107 from China envelope glycoprotein (env) gene, partial cds	617	9e-172	HQ215560
HIV-1 isolate 252_F9 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	612	4e-170	MH672937
HIV-1 isolate 252_C9 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	612	4e-170	MH672928
HIV-1 isolate 252_A1 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	612	4e-170	MH672923
HIV-1 isolate 1109 from China, partial genome	612	4e-170	HQ215555
HIV-1 isolate JL.RF09 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	610	2e-169	KJ184180
HIV-1 isolate BJOX015000.e33 from China pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nonfunctional nef protein (nef) gene, complete sequence	608	6e-169	KM217832
HIV-1 isolate BJOX015000.e32 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217831
HIV-1 isolate BJOX015000.e31 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217830
HIV-1 isolate BJOX015000.e30 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217829
HIV-1 isolate BJOX015000.e27 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217826
HIV-1 isolate BJOX015000.e23 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217822
HIV-1 isolate BJOX015000.e18 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217820
HIV-1 isolate BJOX015000.e17 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217819
HIV-1 isolate BJOX015000.e16 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217818
HIV-1 isolate BJOX015000.e14 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217816
HIV-1 isolate BJOX015000.e13 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217815
HIV-1 isolate BJOX015000.e12 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217814
HIV-1 isolate BJOX015000.e11 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217813
HIV-1 isolate BJOX015000.e21 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217821
HIV-1 isolate BJOX015000.e24 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217823
HIV-1 isolate BJOX015000.e25 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217824
HIV-1 isolate BJOX015000.e28 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217827
HIV-1 isolate BJOX015000.e10 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217812
HIV-1 isolate BJOX015000.e09 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217811
HIV-1 isolate BJOX015000.e07 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217809
HIV-1 isolate BJOX015000.e06 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217808
HIV-1 isolate BJOX015000.e03 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217806
HIV-1 isolate BJOX015000.e02 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217805
HIV-1 isolate BJOX015000.e01 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	608	6e-169	KM217804
HIV-1 isolate JL110041 from China envelope glycoprotein (env) gene, partial cds	608	6e-169	KF818737
HIV-1 isolate BJOX015000.11.5 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	608	6e-169	HM215377
HIV-1 isolate 252_F5 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	606	2e-168	MH672935
HIV-1 isolate 252_E3 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	606	2e-168	MH672934
HIV-1 isolate 252_E12 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	606	2e-168	MH672933
HIV-1 isolate 252_D3 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	606	2e-168	MH672929
HIV-1 isolate 252_G2 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	606	2e-168	MH672938
HIV-1 isolate 1117 from China envelope glycoprotein (env) gene, partial cds	606	2e-168	HQ215566
HIV-1 isolate BJ5.11 from China envelope glycoprotein (env) gene, complete cds	606	2e-168	GU475024
HIV-1 isolate BJOX015000.e29 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	603	3e-167	KM217828
HIV-1 isolate BJOX015000.e26 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	603	3e-167	KM217825
HIV-1 isolate BJOX015000.e15 from China pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), and rev protein (rev) genes, complete cds; nonfunctional vpu protein (vpu) gene, complete sequence; and envelope glycoprotein (env) and nef protein (nef) genes, complete cds	603	3e-167	KM217817
HIV-1 isolate BJOX015000.e08 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	603	3e-167	KM217810
HIV-1 isolate BJOX015000.e05 from China pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	603	3e-167	KM217807
HIV-1 isolate BJOX009000.e20 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	603	3e-167	KM217709
HIV-1 isolate BJOX009000.e14 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	603	3e-167	KM217703
HIV-1 isolate BJOX009000.e15 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	603	3e-167	KM217704
HIV-1 isolate BJOX009000.e19 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	603	3e-167	KM217708
HIV-1 isolate BJOX009000.e13 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	603	3e-167	KM217702
HIV-1 isolate BJOX009000.e11 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	603	3e-167	KM217701
HIV-1 isolate BJOX009000.e10 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	603	3e-167	KM217700
HIV-1 isolate BJOX009000.e09 from China nonfunctional env protein (env) gene, complete sequence; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	603	3e-167	KM217699
HIV-1 isolate BJOX009000.e08 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	603	3e-167	KM217698
HIV-1 isolate BJOX009000.e06 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	603	3e-167	KM217697
HIV-1 isolate BJOX009000.e05 from China vpr protein (vpr) gene, partial cds; tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds	603	3e-167	KM217696
HIV-1 isolate BJOX009000.e04 from China vpr protein (vpr) gene, partial cds; tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds	603	3e-167	KM217695
HIV-1 isolate BJOX009000.e03 from China vpr protein (vpr) gene, partial cds; tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; nonfunctional env protein (env) gene, complete sequence; and nef protein (nef) gene, partial cds	603	3e-167	KM217694
HIV-1 isolate BJOX009000.e02 from China tat protein (tat) gene, partial cds; and rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds	603	3e-167	KM217693
HIV-1 isolate BJOX009000.e01 from China vpr protein (vpr) and vif protein (vif) genes, partial cds; tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds	603	3e-167	KM217692
HIV-1 isolate 1116 from China envelope glycoprotein (env) gene, partial cds	603	3e-167	HQ215565
HIV-1 isolate BJOX009000.02.4 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	603	3e-167	HM215372
HIV-1 isolate 194_D9 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	601	9e-167	MH672749
HIV-1 isolate 194_B1 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	601	9e-167	MH672741
HIV-1 isolate 194_C8 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	601	9e-167	MH672745
HIV-1 isolate 194_D2 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	601	9e-167	MH672747
HIV-1 isolate 194_D3 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	601	9e-167	MH672748
HIV-1 isolate 194_E2 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	601	9e-167	MH672750
HIV-1 isolate 194_F4 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	601	9e-167	MH672753
HIV-1 isolate 194_H8 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	601	9e-167	MH672755
HIV-1 isolate BJYA2.1.1 envelope glycoprotein (env) gene, complete cds	601	9e-167	MN617372
HIV-1 isolate TJ070003 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	601	9e-167	JX112859
HIV-1 isolate 2879 from China envelope glycoprotein (env) gene, partial cds	601	9e-167	JQ901008
HIV-1 isolate BJOX009000.e18 from China nonfunctional env protein (env) gene, complete sequence; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	599	3e-166	KM217707
HIV-1 isolate HLJ15035 from China envelope glycoprotein (env) gene, partial cds	597	1e-165	MK703363
HIV-1 isolate HLJ11058 from China envelope glycoprotein (env) gene, partial cds	597	1e-165	MK703048
HIV-1 isolate BJOX009000.e17 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	597	1e-165	KM217706
HIV-1 isolate hivenv67 from China envelope glycoprotein (env) gene, partial cds	595	4e-165	KX583472
HIV-1 isolate BJOX031000.e27 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	595	4e-165	KM218131
HIV-1 isolate hivenv73 from China envelope glycoprotein (env) gene, partial cds	593	2e-164	KX583478
HIV-1 isolate hivenv10 from China envelope glycoprotein (env) gene, partial cds	593	2e-164	KX583425
HIV-1 isolate HLJ12016 from China envelope glycoprotein (env) gene, partial cds	592	6e-164	MK703079
HIV-1 isolate BJOX031000.e34 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	590	2e-163	KM218136
HIV-1 isolate BJOX031000.e32 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	590	2e-163	KM218135
HIV-1 isolate BJOX031000.e31 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	590	2e-163	KM218134
HIV-1 isolate BJOX031000.e29 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	590	2e-163	KM218133
HIV-1 isolate BJOX031000.e28 from China envelope glycoprotein (env) gene, complete cds; vpu protein (vpu) and rev protein (rev) genes, partial cds; and nonfunctional tat protein (tat) gene, partial sequence	590	2e-163	KM218132
HIV-1 isolate BJOX031000.e23 from China envelope glycoprotein (env) gene, complete cds; vpu protein (vpu) and rev protein (rev) genes, partial cds; and nonfunctional tat protein (tat) gene, partial sequence	590	2e-163	KM218128
HIV-1 isolate BJOX031000.e21 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	590	2e-163	KM218127
HIV-1 isolate BJOX031000.e20 from China envelope glycoprotein (env) gene, complete cds; vpu protein (vpu) gene, partial cds; nonfunctional rev protein (rev) gene, partial sequence; and tat protein (tat) gene, partial cds	590	2e-163	KM218126
HIV-1 isolate BJOX031000.e19 from China nonfunctional env protein (env) gene, complete sequence; vpu protein (vpu) and rev protein (rev) genes, partial cds; and nonfunctional tat protein (tat) gene, partial sequence	590	2e-163	KM218125
HIV-1 isolate BJOX031000.e17 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	590	2e-163	KM218124
HIV-1 isolate BJOX031000.e12 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	590	2e-163	KM218120
HIV-1 isolate BJOX031000.e11 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	590	2e-163	KM218119
HIV-1 isolate BJOX031000.e01 from China vpr protein (vpr) gene, partial cds; tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds	590	2e-163	KM218113
HIV-1 isolate 2841 from China envelope glycoprotein (env) gene, partial cds	590	2e-163	JQ900976
HIV-1 isolate 2835 from China envelope glycoprotein (env) gene, partial cds	590	2e-163	JQ900970

Taxonomy

Taxonomy Report
Taxonomy	Number of hits	Number of Organisms	Description
Human immunodeficiency virus 1	116	1	Human immunodeficiency virus 1 hits

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Distribution of the top 100 Blast Hits on 100 subject sequences

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Sequences producing significant alignments