(cache)NCBI Blast:ref|NZ

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Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	100
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Jun 4, 2025 5:11 PM
Number of letters	2,623,607,469,921
Number of sequences	115,666,519
Entrez query	Includes: Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	36
Effective length of query	208
Effective length of database	2619443475237
Effective search space	544844242849296
Effective search space used	544844242849296

Job Title

ref|NZ_UKJZ02000064.1| ...

RID

4DKSUFDE013 Search expires on 06-10 20:10 pm

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Program

BLASTN

Citation

Database

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Title:Nucleotide collection (nt)
Description:The nucleotide collection consists of GenBank+EMBL+DDBJ+PDB+RefSeq sequences, but excludes EST, STS, GSS, WGS, TSA, patent sequences as well as phase 0, 1, and 2 HTGS sequences and sequences longer than 100Mb. The database is non-redundant. Identical sequences have been merged into one entry, while preserving the accession, GI, title and taxonomy information for each entry.
Molecule Type:mixed DNA
Update date:2025/06/08
Number of sequences:115666519

Query ID

NZ_UKJZ02000064.1

Description

Klebsiella pneumoniae strain EuSCAPE_IL019, whole genome shotgun sequence ...

Molecule type

dna

Query Length

244

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100 sequences selected

, Reading indexes 1-5, displaying indexes 1-5, Reading indexes 6-10, displaying indexes 6-10

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq AF032147.1	HIV-1 UNK9114 isolate from The Netherlands, envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	315	315	100%	8e-81	89.88%	270	AF032147.1
2Select seq DQ499764.1	HIV-1 isolate 99ZATM3 from South Africa envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	307	307	100%	1e-78	89.34%	1362	DQ499764.1
3Select seq DQ447268.1	HIV-1 isolate TM3 clone 8 from South Africa envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	307	307	100%	1e-78	89.34%	2577	DQ447268.1
4Select seq DQ235638.1	HIV-1 isolate 99ZATM3 from South Africa envelope glycoprotein gene, partial cds	Human immunodeficiency virus 1	NA	11676	307	307	100%	1e-78	89.34%	521	DQ235638.1
5Select seq JN808581.1	HIV-1 isolate 06BW_9 clone 9u from Botswana envelope glycoprotein 120 (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	303	303	100%	2e-77	89.07%	320	JN808581.1
6Select seq HM623590.1	HIV-1 isolate 707PKE03N1 from South Africa envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	302	302	100%	6e-77	88.98%	2556	HM623590.1
7Select seq KF374397.1	HIV-1 isolate S270_246_1 from Botswana envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	298	298	100%	8e-76	88.66%	1185	KF374397.1
8Select seq JF294593.1	HIV-1 isolate PP99A-A0958-econB13s1 from South Africa envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	298	298	100%	8e-76	88.71%	510	JF294593.1
9Select seq MG899084.1	HIV-1 isolate CH1012_3_d0130_ipe017_5_05 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	296	296	100%	3e-75	88.62%	4674	MG899084.1
10Select seq MG899048.1	HIV-1 isolate CH1012_3_d0110_ipe017_80_04 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	296	296	100%	3e-75	88.62%	4674	MG899048.1
11Select seq JF294398.1	HIV-1 isolate PP99B-B0108-econB13 from South Africa envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	294	294	97%	1e-74	89.17%	508	JF294398.1
12Select seq DQ164110.1	HIV-1 isolate 04ZAPS199B1 from South Africa, complete genome	Human immunodeficiency virus 1	NA	11676	294	294	97%	1e-74	89.12%	9050	DQ164110.1
13Select seq HQ858300.1	HIV-1 isolate ZM238_F_SW_15H6 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	292	292	100%	4e-74	88.31%	819	HQ858300.1
14Select seq HQ858298.1	HIV-1 isolate ZM238_F_SW_15H29 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	292	292	100%	4e-74	88.31%	819	HQ858298.1
15Select seq HQ858296.1	HIV-1 isolate ZM238_F_SW_15H26 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	292	292	100%	4e-74	88.31%	819	HQ858296.1
16Select seq HQ858293.1	HIV-1 isolate ZM238_F_SW_15H1 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	292	292	100%	4e-74	88.31%	819	HQ858293.1
17Select seq HQ858280.1	HIV-1 isolate ZM238_F_SW_15A4 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	292	292	100%	4e-74	88.31%	834	HQ858280.1
18Select seq HQ858277.1	HIV-1 isolate ZM238_F_SW_15A16 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	292	292	100%	4e-74	88.31%	819	HQ858277.1
19Select seq HQ858271.1	HIV-1 isolate ZM238_F_CF_15_56 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	292	292	100%	4e-74	88.31%	819	HQ858271.1
20Select seq HQ858269.1	HIV-1 isolate ZM238_F_CF_15A39 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	292	292	100%	4e-74	88.31%	819	HQ858269.1
21Select seq JF294367.1	HIV-1 isolate PP97B-A0146-econB15s1 from South Africa envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	292	292	97%	4e-74	89.03%	504	JF294367.1
22Select seq FJ186618.1	HIV-1 isolate ZM238F29Oct02PB_30 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	292	292	100%	4e-74	88.31%	825	FJ186618.1
23Select seq DQ093588.1	HIV-1 isolate 04ZAPS214B1 from South Africa, complete genome	Human immunodeficiency virus 1	NA	11676	292	292	97%	4e-74	89.08%	9010	DQ093588.1
24Select seq PQ627183.1	Simian-Human immunodeficiency virus isolate CH1012.CR5N.wk32.B06 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	291	291	100%	1e-73	88.21%	2073	PQ627183.1
25Select seq PQ627171.1	Simian-Human immunodeficiency virus isolate CH1012.CR5N.wk32.A10 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	291	291	100%	1e-73	88.21%	2082	PQ627171.1
26Select seq PQ626994.1	Simian-Human immunodeficiency virus isolate CH1012.DJ85.wk04.B08 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	291	291	100%	1e-73	88.21%	2088	PQ626994.1
27Select seq PQ574414.1	Simian-Human immunodeficiency virus isolate CH1012.T681w144.A04 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	291	291	100%	1e-73	88.11%	1998	PQ574414.1
28Select seq PQ574384.1	Simian-Human immunodeficiency virus isolate CH1012.T681w136.C10 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	291	291	100%	1e-73	88.11%	1989	PQ574384.1
29Select seq PQ574153.1	Simian-Human immunodeficiency virus isolate CH1012.T681w12.15 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	291	291	100%	1e-73	88.21%	2010	PQ574153.1
30Select seq MG899423.1	HIV-1 isolate CH1012_3_d0743_ipe017_25_31 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	291	291	100%	1e-73	88.21%	4671	MG899423.1
31Select seq MG899416.1	HIV-1 isolate CH1012_3_d0743_ipe017_25_21 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	291	291	100%	1e-73	88.21%	4662	MG899416.1
32Select seq MG899332.1	HIV-1 isolate CH1012_3_d0689_ipe017_30_32 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	291	291	100%	1e-73	88.21%	4662	MG899332.1
33Select seq MG899111.1	HIV-1 isolate CH1012_3_d0166_ipe017_20_26 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	291	291	100%	1e-73	88.21%	4659	MG899111.1
34Select seq MG899106.1	HIV-1 isolate CH1012_3_d0130_ipe017_80_45 from Malawi pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; nonfunctional envelope glycoprotein (env) gene, complete sequence; and nef protein (nef) gene, complete cds	Human immunodeficiency virus 1	NA	11676	291	291	100%	1e-73	88.21%	4624	MG899106.1
35Select seq MG899087.1	HIV-1 isolate CH1012_3_d0130_ipe017_5_13 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	291	291	100%	1e-73	88.21%	4674	MG899087.1
36Select seq MG899081.1	HIV-1 isolate CH1012_3_d0130_ipe017_5_01 from Malawi pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; nonfunctional envelope glycoprotein (env) gene, complete sequence; and nef protein (nef) gene, complete cds	Human immunodeficiency virus 1	NA	11676	291	291	100%	1e-73	88.21%	4673	MG899081.1
37Select seq MG899056.1	HIV-1 isolate CH1012_3_d0110_ipe017_80_12 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	291	291	100%	1e-73	88.21%	4668	MG899056.1
38Select seq MG899033.1	HIV-1 isolate CH1012_3_d0074_ipe017_80_76 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	291	291	100%	1e-73	88.21%	4674	MG899033.1
39Select seq JF294662.1	HIV-1 isolate PP97A-B0639-econB15 from South Africa envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	291	291	97%	1e-73	88.61%	502	JF294662.1
40Select seq AY878054.1	HIV-1 isolate 04ZASK182B1 from South Africa, complete genome	Human immunodeficiency virus 1	NA	11676	291	291	98%	1e-73	88.66%	9084	AY878054.1
41Select seq KF374059.1	HIV-1 isolate 041_20784041_6_2 from Botswana envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	289	289	99%	5e-73	88.16%	1191	KF374059.1
42Select seq JN019802.1	HIV-1 isolate AIIMS_264 from India envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	289	289	99%	5e-73	88.21%	648	JN019802.1
43Select seq OQ604318.1	HIV-1 isolate FX15247 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.95%	300	OQ604318.1
44Select seq KF374212.1	HIV-1 isolate S142162_22_LXM01_1 from Botswana envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.75%	1203	KF374212.1
45Select seq HQ858279.1	HIV-1 isolate ZM238_F_SW_15A3 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	99%	2e-72	88.16%	819	HQ858279.1
46Select seq HQ858273.1	HIV-1 isolate ZM238_F_SW_15A11 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.85%	858	HQ858273.1
47Select seq HQ596029.1	HIV-1 isolate 3009bmL_H11 from Malawi envelope glycoprotein-like (env) gene, complete sequence; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	2597	HQ596029.1
48Select seq HQ596023.1	HIV-1 isolate 3009bmL_F10 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	2598	HQ596023.1
49Select seq HQ596011.1	HIV-1 isolate 3009bmL_C9 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	2598	HQ596011.1
50Select seq HQ596002.1	HIV-1 isolate 3009bmL_A12 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	2598	HQ596002.1
51Select seq FJ186628.1	HIV-1 isolate ZM238F29Oct02PL_27 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.85%	840	FJ186628.1
52Select seq FJ186615.1	HIV-1 isolate ZM238F29Oct02PB_26 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.85%	843	FJ186615.1
53Select seq EU863441.1	HIV-1 isolate 615-05-9 from South Africa envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.85%	2529	EU863441.1
54Select seq AY424091.1	HIV-1 isolate 135M5.2 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	837	AY424091.1
55Select seq AY424090.1	HIV-1 isolate 135M5.1 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	834	AY424090.1
56Select seq AY424089.1	HIV-1 isolate 135M4.3 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.85%	837	AY424089.1
57Select seq AY424086.1	HIV-1 isolate 135M3.2 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	837	AY424086.1
58Select seq AY424084.1	HIV-1 isolate 135M2.3 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	837	AY424084.1
59Select seq AY424083.1	HIV-1 isolate 135M2.2 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	837	AY424083.1
60Select seq AY424082.1	HIV-1 isolate 135M2.1 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	834	AY424082.1
61Select seq AY424081.1	HIV-1 isolate 135M1.1 from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	795	AY424081.1
62Select seq AY424080.1	HIV-1 isolate 135MPL23a from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	834	AY424080.1
63Select seq AY424079.2	HIV-1 isolate ZM135M.PL10a from Zambia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	2544	AY424079.2
64Select seq AY424077.1	HIV-1 isolate 135MPL8a from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	837	AY424077.1
65Select seq AY424075.1	HIV-1 isolate 135MPL5a from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	837	AY424075.1
66Select seq AY424074.1	HIV-1 isolate 135MPL2a from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	837	AY424074.1
67Select seq AY424073.1	HIV-1 isolate 135MPL1a from Zambia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	287	287	100%	2e-72	87.90%	837	AY424073.1
68Select seq OZ241524.1	TSG21S01A0011	Human immunodeficiency virus 1	NA	11676	285	285	100%	6e-72	87.85%	2592	OZ241524.1
69Select seq PQ627312.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D21 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627312.1
70Select seq PQ627311.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D19 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627311.1
71Select seq PQ627310.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D18 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627310.1
72Select seq PQ627308.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D16 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627308.1
73Select seq PQ627306.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D14 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627306.1
74Select seq PQ627304.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D12 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627304.1
75Select seq PQ627302.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D07 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627302.1
76Select seq PQ627300.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D05 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627300.1
77Select seq PQ627298.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D01 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627298.1
78Select seq PQ627296.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C22 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.70%	2088	PQ627296.1
79Select seq PQ627295.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C21 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627295.1
80Select seq PQ627294.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C20 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627294.1
81Select seq PQ627293.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C19 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627293.1
82Select seq PQ627292.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C17 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627292.1
83Select seq PQ627289.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C13 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627289.1
84Select seq PQ627284.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C05 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627284.1
85Select seq PQ627283.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C03 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627283.1
86Select seq PQ627280.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.A17 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627280.1
87Select seq PQ627279.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.A14 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627279.1
88Select seq PQ627277.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.A11 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627277.1
89Select seq PQ627275.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.A09 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627275.1
90Select seq PQ627274.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.A06 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627274.1
91Select seq PQ627273.1	Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.A03 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627273.1
92Select seq PQ627258.1	Simian-Human immunodeficiency virus isolate CH1012.8L2H.wk32.B02 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.70%	2073	PQ627258.1
93Select seq PQ627246.1	Simian-Human immunodeficiency virus isolate CH1012.8L2H.wk32.A09 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.70%	2067	PQ627246.1
94Select seq PQ627239.1	Simian-Human immunodeficiency virus isolate CH1012.8L2H.wk16.B13 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2085	PQ627239.1
95Select seq PQ627234.1	Simian-Human immunodeficiency virus isolate CH1012.8L2H.wk16.B06 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627234.1
96Select seq PQ627233.1	Simian-Human immunodeficiency virus isolate CH1012.8L2H.wk16.B05 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627233.1
97Select seq PQ627220.1	Simian-Human immunodeficiency virus isolate CH1012.8L2H.wk04.B22 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627220.1
98Select seq PQ627219.1	Simian-Human immunodeficiency virus isolate CH1012.8L2H.wk04.B18 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627219.1
99Select seq PQ627218.1	Simian-Human immunodeficiency virus isolate CH1012.8L2H.wk04.B15 envelope glycoprotein (env) gene, partial cds	Simian-Human immunodeficiency virus	NA	57667	285	285	100%	6e-72	87.80%	2088	PQ627218.1
100Select seq AJ289546.1	Human immunodeficiency virus type 1 proviral partial env gene for gp120, isolate jab81r	Human immunodeficiency virus 1	NA	11676	281	281	99%	8e-71	87.35%	263	AJ289546.1

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  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
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Distribution of the top 100 Blast Hits on 100 subject sequences

Query

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Alignments

100 sequences selected
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HIV-1 UNK9114 isolate from The Netherlands, envelope glycoprotein (env) gene, partial cds

Sequence ID: AF032147.1Length: 270Number of Matches: 1

Range 1: 5 to 251GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
315 bits(170)	8e-81()	222/247(90%)	3/247(1%)	Plus/Minus

Query  1    GGGAAATATTCTTTTAATTTTTCCTCTACCTGTTTTAAAGTCTTGTTCCAGGCCTCTCCA  60
            ||||||| || || |||||||| || |||||| | |||||| ||||||||  || |||||
Sbjct  251  GGGAAATGTTTTTCTAATTTTTTCTTTACCTGATCTAAAGTTTTGTTCCATTCCACTCCA  192

Query  61   CTAATGTTACAATATGCTCGTCTTATGTCTCCTATTATTTTA--T-TTGCATAAAATGTT  117
            |||||||||||||||||| ||||||||||||||||||| | |  | ||||||| ||||||
Sbjct  191  CTAATGTTACAATATGCTTGTCTTATGTCTCCTATTATGTCACCTGTTGCATAGAATGTT  132

Query  118  TGTCCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGCCGGGTCTTGTACAAATAATT  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct  131  TGTCCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGCCGGGTCTTGTACACACAATT  72

Query  178  GTTACAGATTCATTAAGGTGTACTATTATTGTTTTGGCATTATCTGTCAGATTTTTAGAG  237
              ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| 
Sbjct  71   TGTACAGATTCATTAAGGTGTACTATTATTGTTTTGGCATTGTCTGTCAGATTTTCAGAT  12

Query  238  CTAATTA  244
            |||||||
Sbjct  11   CTAATTA  5

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HIV-1 isolate 99ZATM3 from South Africa envelope glycoprotein (env) gene, partial cds

Sequence ID: DQ499764.1Length: 1362Number of Matches: 1

Range 1: 716 to 959GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
307 bits(166)	1e-78()	218/244(89%)	0/244(0%)	Plus/Minus

Query  1    GGGAAATATTCTTTTAATTTTTCCTCTACCTGTTTTAAAGTCTTGTTCCAGGCCTCTCCA  60
            ||||| | ||||  |||||||||  ||||||||| |||||| ||||||||   || |  |
Sbjct  959  GGGAAGTGTTCTGCTAATTTTTCTCCTACCTGTTGTAAAGTTTTGTTCCATTGCTGTTTA  900

Query  61   CTAATGTTACAATATGCTCGTCTTATGTCTCCTATTATTTTATTTGCATAAAATGTTTGT  120
            ||||| |||||||||||| ||||||||||||||||||| | ||||||||| |||||||||
Sbjct  899  CTAATATTACAATATGCTTGTCTTATGTCTCCTATTATGTCATTTGCATAGAATGTTTGT  840

Query  121  CCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGCCGGGTCTTGTACAAATAATTGTT  180
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |
Sbjct  839  CCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGCCGGGTCTTGTACACATAATTCCT  780

Query  181  ACAGATTCATTAAGGTGTACTATTATTGTTTTGGCATTATCTGTCAGATTTTTAGAGCTA  240
            |||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||
Sbjct  779  ACAGATTCATTAAGGTGTACTATTATTGTTTTGGCATTGTTTGTCAGATTTTCAGATCTA  720

Query  241  ATTA  244
            ||||
Sbjct  719  ATTA  716

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HIV-1 isolate TM3 clone 8 from South Africa envelope glycoprotein (env) gene, complete cds

Sequence ID: DQ447268.1Length: 2577Number of Matches: 1

Range 1: 809 to 1052GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
307 bits(166)	1e-78()	218/244(89%)	0/244(0%)	Plus/Minus

Query  1     GGGAAATATTCTTTTAATTTTTCCTCTACCTGTTTTAAAGTCTTGTTCCAGGCCTCTCCA  60
             ||||| | ||||  |||||||||  ||||||||| |||||| ||||||||   || |  |
Sbjct  1052  GGGAAGTGTTCTGCTAATTTTTCTCCTACCTGTTGTAAAGTTTTGTTCCATTGCTGTTTA  993

Query  61    CTAATGTTACAATATGCTCGTCTTATGTCTCCTATTATTTTATTTGCATAAAATGTTTGT  120
             ||||| |||||||||||| ||||||||||||||||||| | ||||||||| |||||||||
Sbjct  992   CTAATATTACAATATGCTTGTCTTATGTCTCCTATTATGTCATTTGCATAGAATGTTTGT  933

Query  121   CCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGCCGGGTCTTGTACAAATAATTGTT  180
             |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |
Sbjct  932   CCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGCCGGGTCTTGTACACATAATTCCT  873

Query  181   ACAGATTCATTAAGGTGTACTATTATTGTTTTGGCATTATCTGTCAGATTTTTAGAGCTA  240
             |||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||
Sbjct  872   ACAGATTCATTAAGGTGTACTATTATTGTTTTGGCATTGTTTGTCAGATTTTCAGATCTA  813

Query  241   ATTA  244
             ||||
Sbjct  812   ATTA  809

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HIV-1 isolate 99ZATM3 from South Africa envelope glycoprotein gene, partial cds

Sequence ID: DQ235638.1Length: 521Number of Matches: 1

Range 1: 2 to 245GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
307 bits(166)	1e-78()	218/244(89%)	0/244(0%)	Plus/Minus

Query  1    GGGAAATATTCTTTTAATTTTTCCTCTACCTGTTTTAAAGTCTTGTTCCAGGCCTCTCCA  60
            ||||| | ||||  |||||||||  ||||||||| |||||| ||||||||   || |  |
Sbjct  245  GGGAAGTGTTCTGCTAATTTTTCTCCTACCTGTTGTAAAGTTTTGTTCCATTGCTGTTTA  186

Query  61   CTAATGTTACAATATGCTCGTCTTATGTCTCCTATTATTTTATTTGCATAAAATGTTTGT  120
            ||||| |||||||||||| ||||||||||||||||||| | ||||||||| |||||||||
Sbjct  185  CTAATATTACAATATGCTTGTCTTATGTCTCCTATTATGTCATTTGCATAGAATGTTTGT  126

Query  121  CCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGCCGGGTCTTGTACAAATAATTGTT  180
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |
Sbjct  125  CCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGCCGGGTCTTGTACACATAATTCCT  66

Query  181  ACAGATTCATTAAGGTGTACTATTATTGTTTTGGCATTATCTGTCAGATTTTTAGAGCTA  240
            |||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||
Sbjct  65   ACAGATTCATTAAGGTGTACTATTATTGTTTTGGCATTGTTTGTCAGATTTTCAGATCTA  6

Query  241  ATTA  244
            ||||
Sbjct  5    ATTA  2

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HIV-1 isolate 06BW_9 clone 9u from Botswana envelope glycoprotein 120 (env) gene, partial cds

Sequence ID: JN808581.1Length: 320Number of Matches: 1

Range 1: 5 to 251GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
303 bits(164)	2e-77()	220/247(89%)	3/247(1%)	Plus/Minus

Query  1    GGGAAATATTCTTTTAATTTTTCCTCTACCTGTTTTAAAGTCTTGTTCCAGGCCTCTCCA  60
            ||||||| ||||| |||||||| | ||||||||| ||| || || ||||| ||||||| |
Sbjct  251  GGGAAATGTTCTTCTAATTTTTTCCCTACCTGTTGTAATGTTTTATTCCATGCCTCTCTA  192

Query  61   CTAATGTTACAATATGCTCGTCTTATGTCTCCTATTAT--T-TTATTTGCATAAAATGTT  117
             ||||||||||||||||| |||||||||||||||||||  | |||| ||||||||||| |
Sbjct  191  GTAATGTTACAATATGCTTGTCTTATGTCTCCTATTATGCTATTATGTGCATAAAATGCT  132

Query  118  TGTCCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGCCGGGTCTTGTACAAATAATT  177
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||
Sbjct  131  TGTCCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGCCGGGTCTTATACACGTAATT  72

Query  178  GTTACAGATTCATTAAGGTGTACTATTATTGTTTTGGCATTATCTGTCAGATTTTTAGAG  237
              || ||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| 
Sbjct  71   TCTATAGATTCATTAAGGTGTACTATTATTGTTTTGACATTGTCTGTCAGATTTTCAGAT  12

Query  238  CTAATTA  244
            |||||||
Sbjct  11   CTAATTA  5

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HIV-1 isolate 707PKE03N1 from South Africa envelope glycoprotein (env) gene, complete cds

Sequence ID: HM623590.1Length: 2556Number of Matches: 1

Range 1: 800 to 1043GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
302 bits(163)	6e-77()	218/245(89%)	2/245(0%)	Plus/Minus

Query  1     GGGAAATATTCTTTTAATTTTTCCTC-TACCTGTTTTAAAGTCTTGTTCCAGGCCTCTCC  59
             ||||| | ||||||||||||||| || |||||||| || ||| || |||||| ||  | |
Sbjct  1043  GGGAAGTGTTCTTTTAATTTTTC-TCTTACCTGTTGTAGAGTTTTATTCCAGTCCCTTTC  985

Query  60    ACTAATGTTACAATATGCTCGTCTTATGTCTCCTATTATTTTATTTGCATAAAATGTTTG  119
             |||||||||||||| ||||  |||||||||||||||||| |||||||||||||||| |||
Sbjct  984   ACTAATGTTACAATGTGCTTTTCTTATGTCTCCTATTATGTTATTTGCATAAAATGCTTG  925

Query  120   TCCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGCCGGGTCTTGTACAAATAATTGT  179
             ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||  
Sbjct  924   TCCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGCCAGGTCTTGTACACATAATTCC  865

Query  180   TACAGATTCATTAAGGTGTACTATTATTGTTTTGGCATTATCTGTCAGATTTTTAGAGCT  239
             || ||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| ||
Sbjct  864   TATAGATTTATTAAGGTGTACTATTATTGTTTTGGCATTGTCTGTCAGATTTTCAGATCT  805

Query  240   AATTA  244
              ||||
Sbjct  804   TATTA  800

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HIV-1 isolate S270_246_1 from Botswana envelope glycoprotein (env) gene, partial cds

Sequence ID: KF374397.1Length: 1185Number of Matches: 1

Range 1: 482 to 728GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
298 bits(161)	8e-76()	219/247(89%)	3/247(1%)	Plus/Minus

Query  1    GGGAAATATTCTTTTAATTTTTCCTCTACCTGTTTTAAAGTCTTGTTCCAGGCCTCTCCA  60
            ||||||| |||| ||||||||||| |||| |||| |||||  |||||||||  |||||||
Sbjct  728  GGGAAATGTTCTCTTAATTTTTCCACTACTTGTTGTAAAGCTTTGTTCCAGTTCTCTCCA  669

Query  61   CTAATGTTACAATATGCTCGTCTTATGTCTCCTATTAT---TTTATTTGCATAAAATGTT  117
            ||||||||||||| |||| |||||||||||||||||||    ||||||||||||||||||
Sbjct  668  CTAATGTTACAATGTGCTTGTCTTATGTCTCCTATTATAGCATTATTTGCATAAAATGTT  609

Query  118  TGTCCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGCCGGGTCTTGTACAAATAATT  177
            |||||||||||||||||||||||||||||||||||||||  |||||||||||| | ||||
Sbjct  608  TGTCCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGTTGGGTCTTGTACACACAATT  549

Query  178  GTTACAGATTCATTAAGGTGTACTATTATTGTTTTGGCATTATCTGTCAGATTTTTAGAG  237
              ||||||||| ||||||||| |||||||||||||| |||| | ||||||||||| ||| 
Sbjct  548  TCTACAGATTCCTTAAGGTGTGCTATTATTGTTTTGACATTGTTTGTCAGATTTTCAGAT  489

Query  238  CTAATTA  244
            |||||||
Sbjct  488  CTAATTA  482

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HIV-1 isolate PP99A-A0958-econB13s1 from South Africa envelope glycoprotein (env) gene, partial cds

Sequence ID: JF294593.1Length: 510Number of Matches: 1

Range 1: 191 to 437GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
298 bits(161)	8e-76()	220/248(89%)	5/248(2%)	Plus/Minus

Query  1    GGGAAATATTCTTTTAATTTTTCCTCTACCTGTTTTAAAGTCTTGTTCCA-GGCCTCTCC  59
            ||| ||| ||||||||||||||||| ||||| || |||||| || |||||  || | |||
Sbjct  437  GGGTAATGTTCTTTTAATTTTTCCTTTACCTTTTCTAAAGTTTTATTCCATTGCGT-TCC  379

Query  60   ACTAATGTTACAATATGCTCGTCTTATGTCTCCTATTAT-T--TTATTTGCATAAAATGT  116
            | ||||| ||||||||||| ||||||||||||||||||| |  ||||||||||| |||||
Sbjct  378  ATTAATGCTACAATATGCTTGTCTTATGTCTCCTATTATATCCTTATTTGCATAGAATGT  319

Query  117  TTGTCCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGCCGGGTCTTGTACAAATAAT  176
            |||||||||||||||||||||||| || |||||||||||||| |||||||||||| ||||
Sbjct  318  TTGTCCTGGTCCTATCCTTATACTCTTCCTTGTATTATTGCCAGGTCTTGTACAATTAAT  259

Query  177  TGTTACAGATTCATTAAGGTGTACTATTATTGTTTTGGCATTATCTGTCAGATTTTTAGA  236
            || |||||||||||||||||| |||||||||||||||  ||| |||||||||||||||||
Sbjct  258  TGCTACAGATTCATTAAGGTGGACTATTATTGTTTTGATATTGTCTGTCAGATTTTTAGA  199

Query  237  GCTAATTA  244
             |||||||
Sbjct  198  TCTAATTA  191

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HIV-1 isolate CH1012_3_d0130_ipe017_5_05 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds

Sequence ID: MG899084.1Length: 4674Number of Matches: 1

Range 1: 2112 to 2355GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
296 bits(160)	3e-75()	218/246(89%)	4/246(1%)	Plus/Minus

Query  1     GGGAAATATTCTTTTAATTTTTCCTCTACCTGTTTTAAAGTCTTGTTCCAGGCCTCTCCA  60
             ||||| |||||||||||||||| | |||||  || |||||| || ||||| |||||| ||
Sbjct  2355  GGGAAGTATTCTTTTAATTTTTTCCCTACCGCTTGTAAAGTTTTATTCCATGCCTCTGCA  2296

Query  61    CTAATGTTACAATATGCTCGTCTTATGTCTCCTATTATTTTATTTGCATAAA--ATGTTT  118
             ||||||||||||||||||| |||||||||||||||||| ||||||  |||||  ||| ||
Sbjct  2295  CTAATGTTACAATATGCTCTTCTTATGTCTCCTATTATATTATTT--ATAAAGTATGCTT  2238

Query  119   GTCCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGCCGGGTCTTGTACAAATAATTG  178
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||  
Sbjct  2237  GTCCTGGTCCTATCCTTATACTTGTTCTTGTATTATTGCCGGGTCTTGTACAATTAATCT  2178

Query  179   TTACAGATTCATTAAGGTGTACTATTATTGTTTTGGCATTATCTGTCAGATTTTTAGAGC  238
              |||||||| |||||||||||||||||||||||||||||| | ||||||||| | ||| |
Sbjct  2177  CTACAGATTGATTAAGGTGTACTATTATTGTTTTGGCATTGTTTGTCAGATTCTGAGATC  2118

Query  239   TAATTA  244
             ||||||
Sbjct  2117  TAATTA  2112

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HIV-1 isolate CH1012_3_d0110_ipe017_80_04 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds

Sequence ID: MG899048.1Length: 4674Number of Matches: 1

Range 1: 2112 to 2355GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
296 bits(160)	3e-75()	218/246(89%)	4/246(1%)	Plus/Minus

Query  1     GGGAAATATTCTTTTAATTTTTCCTCTACCTGTTTTAAAGTCTTGTTCCAGGCCTCTCCA  60
             ||||| |||||||||||||||| | |||||  || |||||| || ||||| |||||| ||
Sbjct  2355  GGGAAGTATTCTTTTAATTTTTTCCCTACCGCTTGTAAAGTTTTATTCCATGCCTCTGCA  2296

Query  61    CTAATGTTACAATATGCTCGTCTTATGTCTCCTATTATTTTATTTGCATAAA--ATGTTT  118
             ||||||||||||||||||| |||||||||||||||||| ||||||  |||||  ||| ||
Sbjct  2295  CTAATGTTACAATATGCTCTTCTTATGTCTCCTATTATATTATTT--ATAAAGTATGCTT  2238

Query  119   GTCCTGGTCCTATCCTTATACTTTTTCTTGTATTATTGCCGGGTCTTGTACAAATAATTG  178
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||  
Sbjct  2237  GTCCTGGTCCTATCCTTATACTTGTTCTTGTATTATTGCCGGGTCTTGTACAATTAATCT  2178

Query  179   TTACAGATTCATTAAGGTGTACTATTATTGTTTTGGCATTATCTGTCAGATTTTTAGAGC  238
              |||||||| |||||||||||||||||||||||||||||| | ||||||||| | ||| |
Sbjct  2177  CTACAGATTGATTAAGGTGTACTATTATTGTTTTGGCATTGTTTGTCAGATTCTGAGATC  2118

Query  239   TAATTA  244
             ||||||
Sbjct  2117  TAATTA  2112

Taxonomy

100 sequences selected
Help

Lineage

Lineage Report
Organism	Blast Name	Score	Number of Hits	Description
Lentivirus	viruses		134
.Human immunodeficiency virus 1	viruses	315	93	Human immunodeficiency virus 1 hits
.Simian-Human immunodeficiency virus	viruses	291	41	Simian-Human immunodeficiency virus hits

Organism

Organism Report
Description	Score	E value	Accession
Human immunodeficiency virus 1 [viruses] Next Previous First
HIV-1 UNK9114 isolate from The Netherlands, envelope glycoprotein (env) gene, partial cds	315	8e-81	AF032147
HIV-1 isolate 99ZATM3 from South Africa envelope glycoprotein (env) gene, partial cds	307	1e-78	DQ499764
HIV-1 isolate TM3 clone 8 from South Africa envelope glycoprotein (env) gene, complete cds	307	1e-78	DQ447268
HIV-1 isolate 99ZATM3 from South Africa envelope glycoprotein gene, partial cds	307	1e-78	DQ235638
HIV-1 isolate 06BW_9 clone 9u from Botswana envelope glycoprotein 120 (env) gene, partial cds	303	2e-77	JN808581
HIV-1 isolate 707PKE03N1 from South Africa envelope glycoprotein (env) gene, complete cds	302	6e-77	HM623590
HIV-1 isolate S270_246_1 from Botswana envelope glycoprotein (env) gene, partial cds	298	8e-76	KF374397
HIV-1 isolate PP99A-A0958-econB13s1 from South Africa envelope glycoprotein (env) gene, partial cds	298	8e-76	JF294593
HIV-1 isolate CH1012_3_d0130_ipe017_5_05 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	296	3e-75	MG899084
HIV-1 isolate CH1012_3_d0110_ipe017_80_04 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	296	3e-75	MG899048
HIV-1 isolate PP99B-B0108-econB13 from South Africa envelope glycoprotein (env) gene, partial cds	294	1e-74	JF294398
HIV-1 isolate 04ZAPS199B1 from South Africa, complete genome	294	1e-74	DQ164110
HIV-1 isolate ZM238_F_SW_15H6 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858300
HIV-1 isolate ZM238_F_SW_15H29 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858298
HIV-1 isolate ZM238_F_SW_15H26 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858296
HIV-1 isolate ZM238_F_SW_15H1 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858293
HIV-1 isolate ZM238_F_SW_15A4 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858280
HIV-1 isolate ZM238_F_SW_15A16 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858277
HIV-1 isolate ZM238_F_SW_15G21 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858287
HIV-1 isolate ZM238_F_SW_15G22 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858288
HIV-1 isolate ZM238_F_SW_15H12 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858294
HIV-1 isolate ZM238_F_CF_15_56 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858271
HIV-1 isolate ZM238_F_SW_15A1 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858272
HIV-1 isolate ZM238_F_SW_15A14 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858275
HIV-1 isolate ZM238_F_SW_15A5 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858281
HIV-1 isolate ZM238_F_SW_15G17 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858285
HIV-1 isolate ZM238_F_SW_15G18 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858286
HIV-1 isolate ZM238_F_SW_15G23 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858289
HIV-1 isolate ZM238_F_SW_15G4 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858292
HIV-1 isolate ZM238_F_SW_15H2 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858295
HIV-1 isolate ZM238_F_SW_15H31 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858299
HIV-1 isolate ZM238_F_CF_15A39 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	HQ858269
HIV-1 isolate PP97B-A0146-econB15s1 from South Africa envelope glycoprotein (env) gene, partial cds	292	4e-74	JF294367
HIV-1 isolate ZM238F29Oct02PB_30 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	FJ186618
HIV-1 isolate ZM238F29Oct02PB_31 from Zambia envelope glycoprotein (env) gene, partial cds	292	4e-74	FJ186619
HIV-1 isolate 04ZAPS214B1 from South Africa, complete genome	292	4e-74	DQ093588
HIV-1 isolate CH1012_3_d0743_ipe017_25_31 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	291	1e-73	MG899423
HIV-1 isolate CH1012_3_d0743_ipe017_25_21 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	291	1e-73	MG899416
HIV-1 isolate CH1012_3_d0689_ipe017_30_32 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	291	1e-73	MG899332
HIV-1 isolate CH1012_3_d0166_ipe017_20_26 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	291	1e-73	MG899111
HIV-1 isolate CH1012_3_d0130_ipe017_80_45 from Malawi pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; nonfunctional envelope glycoprotein (env) gene, complete sequence; and nef protein (nef) gene, complete cds	291	1e-73	MG899106
HIV-1 isolate CH1012_3_d0130_ipe017_5_13 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	291	1e-73	MG899087
HIV-1 isolate CH1012_3_d0130_ipe017_5_01 from Malawi pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; nonfunctional envelope glycoprotein (env) gene, complete sequence; and nef protein (nef) gene, complete cds	291	1e-73	MG899081
HIV-1 isolate CH1012_3_d0110_ipe017_80_12 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	291	1e-73	MG899056
HIV-1 isolate CH1012_3_d0074_ipe017_80_76 from Malawi pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	291	1e-73	MG899033
HIV-1 isolate PP97A-B0639-econB15 from South Africa envelope glycoprotein (env) gene, partial cds	291	1e-73	JF294662
HIV-1 isolate 04ZASK182B1 from South Africa, complete genome	291	1e-73	AY878054
HIV-1 isolate 041_20784041_6_2 from Botswana envelope glycoprotein (env) gene, partial cds	289	5e-73	KF374059
HIV-1 isolate AIIMS_264 from India envelope glycoprotein (env) gene, partial cds	289	5e-73	JN019802
HIV-1 isolate FX15247 from China envelope glycoprotein (env) gene, partial cds	287	2e-72	OQ604318
HIV-1 isolate S142162_22_LXM01_1 from Botswana envelope glycoprotein (env) gene, partial cds	287	2e-72	KF374212
HIV-1 isolate ZM238_F_SW_15A3 from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	HQ858279
HIV-1 isolate ZM238_F_SW_15A11 from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	HQ858273
HIV-1 isolate 3009bmL_H11 from Malawi envelope glycoprotein-like (env) gene, complete sequence; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596029
HIV-1 isolate 3009bmL_F10 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596023
HIV-1 isolate 3009bmL_C9 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596011
HIV-1 isolate 3009bmL_A12 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596002
HIV-1 isolate 3009bmL_C11 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596006
HIV-1 isolate 3009bmL_C22 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596008
HIV-1 isolate 3009bmL_C3 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596009
HIV-1 isolate 3009bmL_C7 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596010
HIV-1 isolate 3009bmL_D10 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596013
HIV-1 isolate 3009bmL_D11 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596014
HIV-1 isolate 3009bmL_D22 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596016
HIV-1 isolate 3009bmL_D8 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596018
HIV-1 isolate 3009bmL_D9 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596019
HIV-1 isolate 3009bmL_E2 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596020
HIV-1 isolate 3009bmL_F11 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596024
HIV-1 isolate 3009bmL_F12 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596025
HIV-1 isolate 3009bmL_F2 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596026
HIV-1 isolate 3009bmL_G7 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596027
HIV-1 isolate 3009bmL_G9 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	287	2e-72	HQ596028
HIV-1 isolate ZM238F29Oct02PL_27 from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	FJ186628
HIV-1 isolate ZM238F29Oct02PB_26 from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	FJ186615
HIV-1 isolate 615-05-9 from South Africa envelope glycoprotein (env) gene, partial cds	287	2e-72	EU863441
HIV-1 isolate 135M5.2 from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	AY424091
HIV-1 isolate 135M5.1 from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	AY424090
HIV-1 isolate 135M4.3 from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	AY424089
HIV-1 isolate 135M3.2 from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	AY424086
HIV-1 isolate 135M2.3 from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	AY424084
HIV-1 isolate 135M2.2 from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	AY424083
HIV-1 isolate 135M2.1 from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	AY424082
HIV-1 isolate 135M1.1 from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	AY424081
HIV-1 isolate 135MPL23a from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	AY424080
HIV-1 isolate ZM135M.PL10a from Zambia envelope glycoprotein (env) gene, complete cds	287	2e-72	AY424079
HIV-1 isolate 135MPL8a from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	AY424077
HIV-1 isolate 135MPL9a from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	AY424078
HIV-1 isolate 135MPL5a from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	AY424075
HIV-1 isolate 135MPL7a from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	AY424076
HIV-1 isolate 135MPL2a from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	AY424074
HIV-1 isolate 135MPL1a from Zambia envelope glycoprotein (env) gene, partial cds	287	2e-72	AY424073
TSG21S01A0011	285	6e-72	OZ241524
Human immunodeficiency virus type 1 proviral partial env gene for gp120, isolate jab81r	281	8e-71	AJ289546
Simian-Human immunodeficiency virus [viruses] Next Previous First
Simian-Human immunodeficiency virus isolate CH1012.CR5N.wk32.B06 envelope glycoprotein (env) gene, partial cds	291	1e-73	PQ627183
Simian-Human immunodeficiency virus isolate CH1012.CR5N.wk32.B09 envelope glycoprotein (env) gene, partial cds	291	1e-73	PQ627184
Simian-Human immunodeficiency virus isolate CH1012.CR5N.wk32.A10 envelope glycoprotein (env) gene, partial cds	291	1e-73	PQ627171
Simian-Human immunodeficiency virus isolate CH1012.DJ85.wk04.B08 envelope glycoprotein (env) gene, partial cds	291	1e-73	PQ626994
Simian-Human immunodeficiency virus isolate CH1012.DJ85.wk04.B12 envelope glycoprotein (env) gene, partial cds	291	1e-73	PQ626997
Simian-Human immunodeficiency virus isolate CH1012.T681w144.A04 envelope glycoprotein (env) gene, partial cds	291	1e-73	PQ574414
Simian-Human immunodeficiency virus isolate CH1012.T681w136.C10 envelope glycoprotein (env) gene, partial cds	291	1e-73	PQ574384
Simian-Human immunodeficiency virus isolate CH1012.T681w12.15 envelope glycoprotein (env) gene, partial cds	291	1e-73	PQ574153
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D21 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627312
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D19 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627311
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D18 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627310
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D16 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627308
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D17 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627309
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D14 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627306
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D12 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627304
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D07 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627302
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D05 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627300
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.D01 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627298
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C22 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627296
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C21 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627295
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C20 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627294
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C19 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627293
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C17 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627292
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C13 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627289
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C05 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627284
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C03 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627283
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.A17 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627280
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.A14 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627279
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.C23 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627297
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.A11 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627277
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.A09 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627275
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.A06 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627274
Simian-Human immunodeficiency virus isolate CH1012.GPZ6.wk04.A03 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627273
Simian-Human immunodeficiency virus isolate CH1012.8L2H.wk32.B02 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627258
Simian-Human immunodeficiency virus isolate CH1012.8L2H.wk32.A09 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627246
Simian-Human immunodeficiency virus isolate CH1012.8L2H.wk16.B13 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627239
Simian-Human immunodeficiency virus isolate CH1012.8L2H.wk16.B06 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627234
Simian-Human immunodeficiency virus isolate CH1012.8L2H.wk16.B05 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627233
Simian-Human immunodeficiency virus isolate CH1012.8L2H.wk04.B22 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627220
Simian-Human immunodeficiency virus isolate CH1012.8L2H.wk04.B18 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627219
Simian-Human immunodeficiency virus isolate CH1012.8L2H.wk04.B15 envelope glycoprotein (env) gene, partial cds	285	6e-72	PQ627218

Taxonomy

Taxonomy Report
Taxonomy	Number of hits	Number of Organisms	Description
Lentivirus	134	2
. Human immunodeficiency virus 1	93	1	Human immunodeficiency virus 1 hits
. Simian-Human immunodeficiency virus	41	1	Simian-Human immunodeficiency virus hits

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Distribution of the top 100 Blast Hits on 100 subject sequences

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Sequences producing significant alignments