(cache)NCBI Blast:ref|NZ

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Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	100
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Jun 4, 2025 5:11 PM
Number of letters	2,623,607,469,921
Number of sequences	115,666,519
Entrez query	Includes: Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	37
Effective length of query	367
Effective length of database	2619327808718
Effective search space	961293305799506
Effective search space used	961293305799506

Job Title

ref|NZ_NRKF01000105.1| ...

RID

4BG1UHEZ013 Search expires on 06-10 00:54 am

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Program

BLASTN

Citation

Database

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Title:Nucleotide collection (nt)
Description:The nucleotide collection consists of GenBank+EMBL+DDBJ+PDB+RefSeq sequences, but excludes EST, STS, GSS, WGS, TSA, patent sequences as well as phase 0, 1, and 2 HTGS sequences and sequences longer than 100Mb. The database is non-redundant. Identical sequences have been merged into one entry, while preserving the accession, GI, title and taxonomy information for each entry.
Molecule Type:mixed DNA
Update date:2025/06/07
Number of sequences:115666519

Query ID

NZ_NRKF01000105.1

Description

Cronobacter sakazakii strain cro4215W contig105, whole genome shotgun sequence ...

Molecule type

dna

Query Length

404

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100 sequences selected

, Reading indexes 1-5, displaying indexes 1-5, Reading indexes 6-10, displaying indexes 6-10

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq MK703484.1	HIV-1 isolate HLJ15167 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	497	497	100%	1e-135	89.02%	522	MK703484.1
2Select seq JQ901015.1	HIV-1 isolate 2888 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	486	486	100%	3e-132	88.22%	533	JQ901015.1
3Select seq JQ901003.1	HIV-1 isolate 2874 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	481	481	100%	1e-130	88.01%	533	JQ901003.1
4Select seq MH120099.1	HIV-1 isolate JL15025 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	477	477	97%	2e-129	88.42%	507	MH120099.1
5Select seq MK703237.1	HIV-1 isolate HLJ13113 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	473	473	100%	2e-128	87.74%	531	MK703237.1
6Select seq KP109511.1	HIV-1 isolate DEMB12CN006 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	457	457	100%	2e-123	87.02%	8998	KP109511.1
7Select seq MK703173.1	HIV-1 isolate HLJ13041 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	451	451	100%	1e-121	86.84%	531	MK703173.1
8Select seq KM217685.1	HIV-1 isolate BJOX007000.e01 from China tat protein (tat) gene, partial cds; rev protein (rev) and vpu protein (vpu) genes, complete cds; nonfunctional env protein (env) gene, complete sequence; and nef protein (nef) gene, partial cds	Human immunodeficiency virus 1	NA	11676	451	451	100%	1e-121	86.96%	3044	KM217685.1
9Select seq MH541695.1	HIV-1 isolate YA113-4-14 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	451	451	100%	1e-121	86.87%	1530	MH541695.1
10Select seq KM217690.1	HIV-1 isolate BJOX007000.e09 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	446	446	100%	5e-120	86.71%	2577	KM217690.1
11Select seq KM217689.1	HIV-1 isolate BJOX007000.e08 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	446	446	100%	5e-120	86.71%	2577	KM217689.1
12Select seq KP418806.1	HIV-1 isolate BJMP3194B from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) gene, complete cds; nonfunctional vpr protein (vpr) gene, complete sequence; and tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	446	446	100%	5e-120	86.54%	8989	KP418806.1
13Select seq MH541693.1	HIV-1 isolate YA113-4-12 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	446	446	100%	5e-120	86.63%	1530	MH541693.1
14Select seq MH120081.1	HIV-1 isolate JL15007 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	444	444	97%	2e-119	87.00%	501	MH120081.1
15Select seq KM217691.1	HIV-1 isolate BJOX007000.e10 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	442	442	100%	6e-119	86.47%	2577	KM217691.1
16Select seq KC596066.1	HIV-1 isolate DEMB09CN002 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nonfunctional nef protein (nef) gene, complete sequence	Human immunodeficiency virus 1	NA	11676	442	442	100%	6e-119	86.41%	8951	KC596066.1
17Select seq JQ900987.1	HIV-1 isolate 2854 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	442	442	100%	6e-119	86.26%	536	JQ900987.1
18Select seq KM217688.1	HIV-1 isolate BJOX007000.e04 from China nonfunctional env protein (env) gene, partial sequence; and vpu protein (vpu), rev protein (rev), tat protein (tat), and nef protein (nef) genes, partial cds	Human immunodeficiency virus 1	NA	11676	440	440	100%	2e-118	86.47%	2937	KM217688.1
19Select seq MH541668.1	HIV-1 isolate YA113-3-11 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	440	440	100%	2e-118	86.40%	1533	MH541668.1
20Select seq MH541659.1	HIV-1 isolate YA113-3-2 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	440	440	100%	2e-118	86.40%	1533	MH541659.1
21Select seq MH541652.1	HIV-1 isolate YA113-2-29 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	440	440	100%	2e-118	86.40%	1533	MH541652.1
22Select seq KM217687.1	HIV-1 isolate BJOX007000.e03 from China vpu protein (vpu) gene, partial cds; nonfunctional env protein (env) gene, complete sequence; and rev protein (rev), tat protein (tat), and nef protein (nef) genes, partial cds	Human immunodeficiency virus 1	NA	11676	438	438	100%	8e-118	86.47%	2765	KM217687.1
23Select seq MH541680.1	HIV-1 isolate YA113-3-23 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	435	435	100%	1e-116	86.16%	1533	MH541680.1
24Select seq MH541678.1	HIV-1 isolate YA113-3-21 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	435	435	100%	1e-116	86.16%	1533	MH541678.1
25Select seq MH541675.1	HIV-1 isolate YA113-3-18 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	435	435	100%	1e-116	86.16%	1533	MH541675.1
26Select seq MH541673.1	HIV-1 isolate YA113-3-16 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	435	435	100%	1e-116	86.16%	1533	MH541673.1
27Select seq MH541672.1	HIV-1 isolate YA113-3-15 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	435	435	100%	1e-116	86.16%	1533	MH541672.1
28Select seq MH541670.1	HIV-1 isolate YA113-3-13 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	435	435	100%	1e-116	86.16%	1533	MH541670.1
29Select seq MH541669.1	HIV-1 isolate YA113-3-12 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	435	435	100%	1e-116	86.16%	1533	MH541669.1
30Select seq MH541666.1	HIV-1 isolate YA113-3-9 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	435	435	100%	1e-116	86.16%	1533	MH541666.1
31Select seq MH541664.1	HIV-1 isolate YA113-3-7 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	435	435	100%	1e-116	86.16%	1533	MH541664.1
32Select seq MH541629.1	HIV-1 isolate YA113-2-6 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	435	435	100%	1e-116	86.16%	1533	MH541629.1
33Select seq MH541625.1	HIV-1 isolate YA113-2-2 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	435	435	100%	1e-116	86.16%	1530	MH541625.1
34Select seq MH541611.1	HIV-1 isolate YA113-1-19 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	435	435	100%	1e-116	86.16%	1533	MH541611.1
35Select seq MH541600.1	HIV-1 isolate YA113-1-8 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	435	435	100%	1e-116	86.16%	1533	MH541600.1
36Select seq KU724105.1	HIV-1 isolate BJMP3294B from China, complete genome	Human immunodeficiency virus 1	NA	11676	433	433	100%	4e-116	86.06%	8992	KU724105.1
37Select seq KM217637.1	HIV-1 isolate BJOX004000.e30 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	431	431	100%	1e-115	86.37%	2541	KM217637.1
38Select seq KP418805.1	HIV-1 isolate BJMP3037B from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	431	431	100%	1e-115	86.06%	8973	KP418805.1
39Select seq JQ901016.1	HIV-1 isolate 2889 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	429	429	100%	5e-115	85.89%	527	JQ901016.1
40Select seq MH541674.1	HIV-1 isolate YA113-3-17 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	429	429	100%	5e-115	85.92%	1533	MH541674.1
41Select seq KM217640.1	HIV-1 isolate BJOX004000.e40 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	100%	6e-114	86.13%	2541	KM217640.1
42Select seq KM217635.1	HIV-1 isolate BJOX004000.e28 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	100%	6e-114	86.13%	2541	KM217635.1
43Select seq KM217632.1	HIV-1 isolate BJOX004000.e25 from China envelope glycoprotein (env), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	100%	6e-114	86.13%	2437	KM217632.1
44Select seq KM217631.1	HIV-1 isolate BJOX004000.e24 from China nonfunctional env protein (env) gene, partial sequence; and rev protein (rev) and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	100%	6e-114	86.13%	2290	KM217631.1
45Select seq KM217628.1	HIV-1 isolate BJOX004000.e21 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	100%	6e-114	86.13%	2541	KM217628.1
46Select seq KM217627.1	HIV-1 isolate BJOX004000.e20 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	100%	6e-114	86.13%	2541	KM217627.1
47Select seq KM217625.1	HIV-1 isolate BJOX004000.e18 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	100%	6e-114	86.13%	2541	KM217625.1
48Select seq KM217623.1	HIV-1 isolate BJOX004000.e12 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	100%	6e-114	86.13%	2541	KM217623.1
49Select seq KM217622.1	HIV-1 isolate BJOX004000.e10 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	100%	6e-114	86.13%	2541	KM217622.1
50Select seq KM217620.1	HIV-1 isolate BJOX004000.e07 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	100%	6e-114	86.13%	2541	KM217620.1
51Select seq KM217619.1	HIV-1 isolate BJOX004000.e06 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	100%	6e-114	86.13%	2541	KM217619.1
52Select seq KM217617.1	HIV-1 isolate BJOX004000.e03 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	100%	6e-114	86.13%	2541	KM217617.1
53Select seq KM217616.1	HIV-1 isolate BJOX004000.e02 from China nonfunctional env protein (env) gene, partial sequence; and rev protein (rev) and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	100%	6e-114	86.13%	2340	KM217616.1
54Select seq KM217615.1	HIV-1 isolate BJOX004000.e01 from China envelope glycoprotein (env), vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	100%	6e-114	86.13%	2504	KM217615.1
55Select seq MN617388.1	HIV-1 isolate BJYA180.8 envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	424	424	100%	2e-113	85.71%	2556	MN617388.1
56Select seq MN617385.1	HIV-1 isolate BJYA119.6 envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	420	420	100%	3e-112	85.44%	2592	MN617385.1
57Select seq KM217639.1	HIV-1 isolate BJOX004000.e39 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	420	420	100%	3e-112	85.89%	2541	KM217639.1
58Select seq KM217636.1	HIV-1 isolate BJOX004000.e29 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	420	420	100%	3e-112	85.89%	2541	KM217636.1
59Select seq KM217624.1	HIV-1 isolate BJOX004000.e13 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	420	420	100%	3e-112	85.89%	2541	KM217624.1
60Select seq KM217621.1	HIV-1 isolate BJOX004000.e08 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	420	420	100%	3e-112	85.89%	2541	KM217621.1
61Select seq KM217618.1	HIV-1 isolate BJOX004000.e05 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	420	420	100%	3e-112	85.89%	2541	KM217618.1
62Select seq MN617390.1	HIV-1 isolate BJYA192.4 envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	418	418	100%	1e-111	85.33%	2559	MN617390.1
63Select seq KM217686.1	HIV-1 isolate BJOX007000.e02 from China tat protein (tat) gene, partial cds; and rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds	Human immunodeficiency virus 1	NA	11676	418	418	100%	1e-111	85.51%	2848	KM217686.1
64Select seq HM215370.1	HIV-1 isolate BJOX007000.02.3 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	418	418	100%	1e-111	85.51%	2577	HM215370.1
65Select seq MN642098.1	Human immunodeficiency virus isolate HN40.40 envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus	NA	12721	414	414	100%	1e-110	85.23%	2556	MN642098.1
66Select seq MK702958.1	HIV-1 isolate HLJ10028 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	414	414	100%	1e-110	85.24%	534	MK702958.1
67Select seq KY820504.1	HIV-1 isolate 92DGi6-14922 from South Korea envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	414	414	100%	1e-110	85.40%	2562	KY820504.1
68Select seq OQ820328.1	HIV-1 isolate R06.CD.01.H01.01 from USA envelope glycoprotein (env), vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	414	414	100%	1e-110	85.40%	2550	OQ820328.1
69Select seq JQ900995.1	HIV-1 isolate 2864 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	412	412	100%	5e-110	85.34%	527	JQ900995.1
70Select seq MH920920.1	HIV-1 isolate BJSJS2016S128 from China nonfunctional envelope glycoprotein (env) gene, partial sequence	Human immunodeficiency virus 1	NA	11676	411	411	97%	2e-109	85.25%	450	MH920920.1
71Select seq MN617389.1	HIV-1 isolate BJYA187.8 envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	409	409	100%	6e-109	85.06%	2559	MN617389.1
72Select seq KY820503.1	HIV-1 isolate 92DGi6-14921 from South Korea envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	409	409	100%	6e-109	85.09%	2565	KY820503.1
73Select seq KU869604.1	HIV-1 isolate 92DGi6-13344 from South Korea envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	409	409	100%	6e-109	85.12%	2562	KU869604.1
74Select seq OQ820331.1	HIV-1 isolate R06.CD.02.C09.01 from USA envelope glycoprotein (env), vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	409	409	100%	6e-109	85.15%	2550	OQ820331.1
75Select seq MT559046.1	HIV-1 isolate 92DGi6-Jun-1992 from South Korea, partial genome	Human immunodeficiency virus 1	NA	11676	409	409	100%	6e-109	85.12%	8762	MT559046.1
76Select seq EU131799.1	HIV-1 isolate CNHLJSM06059 from China envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	409	409	100%	6e-109	85.10%	2580	EU131799.1
77Select seq AF137810.1	HIV-1 p2c040-05 from USA envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	409	409	100%	6e-109	85.26%	591	AF137810.1
78Select seq KU896112.1	HIV-1 isolate Donor-P-93KPS10-13292/10994/10992 from South Korea envelope glycoprotein (env), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	407	407	100%	2e-108	85.29%	2090	KU896112.1
79Select seq JQ900986.1	HIV-1 isolate 2853 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	407	407	100%	2e-108	84.85%	542	JQ900986.1
80Select seq AY302918.1	HIV-1 isolate 1997USGG970307p4 from USA envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	407	407	100%	2e-108	84.90%	605	AY302918.1
81Select seq AF137813.1	HIV-1 p2c040-12 from USA envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	403	403	100%	3e-107	85.01%	594	AF137813.1
82Select seq MN043604.1	HIV-1 isolate 92KTG3-HP-14 from South Korea, complete genome	Human immunodeficiency virus 1	NA	11676	401	401	100%	1e-106	84.80%	8753	MN043604.1
83Select seq PP483792.1	HIV-1 isolate 191286 from China, complete genome	Human immunodeficiency virus 1	NA	11676	401	401	100%	1e-106	84.73%	9030	PP483792.1
84Select seq KJ140259.3	HIV-1 isolate HP-14:92KTG3-16502 from South Korea, partial genome	Human immunodeficiency virus 1	NA	11676	401	401	100%	1e-106	84.80%	9060	KJ140259.3
85Select seq KY968408.1	HIV-1 isolate 89886FL_2001 from Argentina, partial genome	Human immunodeficiency virus 1	NA	11676	401	401	100%	1e-106	84.99%	8697	KY968408.1
86Select seq KX129285.1	HIV-1 isolate IC.277.0.D4 from USA envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	401	401	100%	1e-106	84.60%	2577	KX129285.1
87Select seq KU869558.1	HIV-1 isolate HP-14-93KTG10-13333/13259 from South Korea envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	401	401	100%	1e-106	84.80%	2550	KU869558.1
88Select seq JQ903228.1	HIV-1 isolate H19768_06S3 from Netherlands envelope glycoprotein gene, partial cds	Human immunodeficiency virus 1	NA	11676	401	401	100%	1e-106	84.63%	553	JQ903228.1
89Select seq MH541665.1	HIV-1 isolate YA113-3-8 from China envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	401	401	100%	1e-106	84.65%	1545	MH541665.1
90Select seq JF910177.1	HIV-1 isolate 232.7.1C11 from Netherlands envelope glycoprotein (env), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	401	401	100%	1e-106	84.63%	2460	JF910177.1
91Select seq EU744103.1	HIV-1 isolate H4.007.1E8 from Netherlands envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	401	401	100%	1e-106	84.63%	2547	EU744103.1
92Select seq EU744102.1	HIV-1 isolate H4.007.1C11 from Netherlands envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	401	401	100%	1e-106	84.63%	2547	EU744102.1
93Select seq EU744101.1	HIV-1 isolate H4.007.1C10 from Netherlands envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	401	401	100%	1e-106	84.63%	2547	EU744101.1
94Select seq EU744100.1	HIV-1 isolate H4.007.1C9 from Netherlands envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	401	401	100%	1e-106	84.63%	2547	EU744100.1
95Select seq DQ410107.1	HIV-1 isolate ES6v1ed8 from USA envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	401	401	100%	1e-106	84.88%	2544	DQ410107.1
96Select seq AF138578.1	HIV-1 p9c063-12 from USA envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	401	401	100%	1e-106	84.71%	618	AF138578.1
97Select seq AF137820.1	HIV-1 p2c051-19 from USA envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	401	401	100%	1e-106	84.77%	603	AF137820.1
98Select seq MW189238.1	HIV-1 isolate 4675_4 from USA nonfunctional envelope glycoprotein (env) gene, partial sequence	Human immunodeficiency virus 1	NA	11676	399	399	100%	4e-106	84.69%	2536	MW189238.1
99Select seq MT121823.1	HIV-1 isolate 7242P00a from Thailand, partial genome	Human immunodeficiency virus 1	NA	11676	398	398	100%	1e-105	84.56%	9099	MT121823.1
100Select seq MT121817.1	HIV-1 isolate 7242P00_16 from Thailand, partial genome	Human immunodeficiency virus 1	NA	11676	394	394	100%	2e-104	84.31%	8726	MT121817.1

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  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
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Distribution of the top 100 Blast Hits on 100 subject sequences

Query

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Alignments

100 sequences selected
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HIV-1 isolate HLJ15167 from China envelope glycoprotein (env) gene, partial cds

Sequence ID: MK703484.1Length: 522Number of Matches: 1

Range 1: 115 to 520GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
497 bits(269)	1e-135()	365/410(89%)	11/410(2%)	Plus/Plus

Query  1    AGACCCACCAACAATACAAGAAAGAGTATA-AGTCTTGCAGGGGGGAGAGCATTATATGC  59
            ||||||| |||||||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct  115  AGACCCAACAACAATACAAGAAAGAGTATACAAT-TAGCAGGGGGGAGAGCATTATATGC  173

Query  60   AACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAATGTTAGTAAAGGAAATTG  119
            ||||||||||||||||||| | |||||||||||||||||||||||||||  |||||||||
Sbjct  174  AACAGGAGACATAATAGGAAACATAAGACAAGCACATTGTAATGTTAGTGCAGGAAATTG  233

Query  120  GACTGAAACTTTAGGACAGGTAGCTACAAAATTAAGAGAACAATTTAAGAATAAGACAAT  179
            || |||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct  234  GAGTGAAACTTTAAGACAGGTAGCTATAAAATTAAGAGACCAATTTAAGAATAAGACAAT  293

Query  180  AGTCTTTAACTCATCCTCAGGAGGGGATCCCGAGGTTGAAATGTTCATATTTAATTGTGG  239
            ||||||||| ||||||||||||||||| || ||  ||  |||| ||| ||||||||||||
Sbjct  294  AGTCTTTAATTCATCCTCAGGAGGGGACCCAGAAATTATAATGCTCACATTTAATTGTGG  353

Query  240  AGGGGAGTTTTTCTACTGTAATACATCAAAACTGTTTAATTATACTTTTTTGGCTAATGG  299
            ||| ||||| ||||||||||||||| |||||||||||||||||||   ||| | ||||| 
Sbjct  354  AGGTGAGTTCTTCTACTGTAATACAACAAAACTGTTTAATTATAC---TTTAGATAATGA  410

Query  300  TACTGGGCAA-AAT--TACAGTACT---GGAAATATCACACTCCAATGCAGAATAAAACA  353
            |||| |||||   |   || |||||   |||| ||||||||||| |||||||||||||||
Sbjct  411  TACTTGGCAAGGGTCAAACGGTACTAACGGAACTATCACACTCCCATGCAGAATAAAACA  470

Query  354  AATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCA  403
            ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  471  AATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCCCCCA  520

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HIV-1 isolate 2888 from China envelope glycoprotein (env) gene, partial cds

Sequence ID: JQ901015.1Length: 533Number of Matches: 1

Range 1: 115 to 529GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
486 bits(263)	3e-132()	367/416(88%)	14/416(3%)	Plus/Plus

Query  1    AGACCCACCAACAATACAAGAAAGAGTATA-AGTCTTGCAGGGGGGAGAGCATTATATGC  59
            ||||||| |||||||||||||||||||||| | | | | |||||||||| ||||||||||
Sbjct  115  AGACCCAACAACAATACAAGAAAGAGTATACAAT-TAGTAGGGGGGAGATCATTATATGC  173

Query  60   AACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAATGTTAGTAAAGGAAATTG  119
            ||||||||||||||||||||| |||||||||||||||||||||||||||  |||||| ||
Sbjct  174  AACAGGAGACATAATAGGAGACATAAGACAAGCACATTGTAATGTTAGTGCAGGAAAGTG  233

Query  120  GACTGAAACTTTAGGACAGGTAGCTACAAAATTAAGAGAACAATT------TAAGAATAA  173
            || ||||||||||  || |||||||| |||||||||||| |||||      |||||||||
Sbjct  234  GAATGAAACTTTAAAACGGGTAGCTATAAAATTAAGAGACCAATTTGAACATAAGAATAA  293

Query  174  GACAATAGTCTTTAACTCATCCTCAGGAGGGGATCCCGAGGTTGAAATGTTCATATTTAA  233
            |||||||||||||||||||||||||||||||||||| ||  || ||||||||| ||||||
Sbjct  294  GACAATAGTCTTTAACTCATCCTCAGGAGGGGATCCAGAAATTAAAATGTTCACATTTAA  353

Query  234  TTGTGGAGGGGAGTTTTTCTACTGTAATACATCAAAACTGTTTAATTATACTTTTTTGGC  293
            ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||  ||||
Sbjct  354  TTGTGGAGGAGAGTTTTTCTACTGTRATACAACAAAACTGTTTAATTATACTTTCCTGGC  413

Query  294  TAATGGTACTGGGCAA-AAT--TACAGTACT---GGAAATATCACACTCCAATGCAGAAT  347
            ||||  | |||||||| | |   ||| ||||   |||| ||||||||||| |||||||||
Sbjct  414  TAATAATGCTGGGCAAGAGTCAAACAATACTAACGGAACTATCACACTCCCATGCAGAAT  473

Query  348  AAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCA  403
            ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct  474  AAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAGAGCAATGTATACCCCTCCCA  529

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HIV-1 isolate 2874 from China envelope glycoprotein (env) gene, partial cds

Sequence ID: JQ901003.1Length: 533Number of Matches: 1

Range 1: 115 to 529GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
481 bits(260)	1e-130()	367/417(88%)	16/417(3%)	Plus/Plus

Query  1    AGACCCACCAACAATACAAGAAAGAGTATA-AGTCTTGCAGGGGGGAGAGCATTATATGC  59
            ||||||| |||||||||||||||||||||| | | | |||   ||||||||||| |||||
Sbjct  115  AGACCCAACAACAATACAAGAAAGAGTATACAAT-TAGCACCAGGGAGAGCATTTTATGC  173

Query  60   AACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAATGTTAGTAAAGGAAATTG  119
            ||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct  174  AACAGGAGATATAATAGGAGATATAAGACAAGCACATTGTAATGTTAGTGCAGGAAATTG  233

Query  120  GACTGAAACTTTAGGACAGGTAGCTACAAAATTAAGAGAACAATT------TAAGAATAA  173
            |||| |||||||| ||||| |||||| ||||||||| || |||||      |||||||||
Sbjct  234  GACTAAAACTTTAAGACAGATAGCTATAAAATTAAGGGACCAATTTGAAGATAAGAATAA  293

Query  174  GACAATAGTCTTTAACTCATCCTCAGGAGGGGATCCCGAGGTTGAAATGTTCATATTTAA  233
            ||||||||||||||| |||||||||||||||||||| ||  ||| |||||||| ||||||
Sbjct  294  GACAATAGTCTTTAATTCATCCTCAGGAGGGGATCCAGAAATTGTAATGTTCACATTTAA  353

Query  234  TTGTGGAGGGGAGTTTTTCTACTGTAATACATCAAAACTGTTTAATTATACTTTTTTGGC  293
            |||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct  354  TTGTGGAGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAATCATACTTTTTTGGC  413

Query  294  TAATGGTACTGGGCAAAATTAC-AGTACT---GGAA--AT-ATCACACTCCAATGCAGAA  346
            ||||| ||||||| || | |||  | |||   ||||   | |||||||||| ||||||||
Sbjct  414  TAATGATACTGGG-AATAGTACTGGGACTAACGGAAGTGTCATCACACTCCCATGCAGAA  472

Query  347  TAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCA  403
            |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct  473  TAAAACAAATTATAAAYAGGTGGCAGGAAGTAGGAAAAGCAATGTATACCCCTCCCA  529

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HIV-1 isolate JL15025 from China envelope glycoprotein (env) gene, partial cds

Sequence ID: MH120099.1Length: 507Number of Matches: 1

Range 1: 103 to 507GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
477 bits(258)	2e-129()	359/406(88%)	14/406(3%)	Plus/Plus

Query  1    AGACCCACCAACAATACAAGAAAGAGTATA-AGTCTTGCAGGGGGGAGAGCATTATATGC  59
            ||||||| ||||||||||||||| |||||| ||| | |||||||||||||||||||||||
Sbjct  103  AGACCCAACAACAATACAAGAAAAAGTATACAGT-TAGCAGGGGGGAGAGCATTATATGC  161

Query  60   AACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAATGTTAGTAAAGGAAATTG  119
            ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct  162  AACAGGAGATATAATAGGAGACATAAGACAAGCACATTGTAATGTTAGTGAAGGAAATTG  221

Query  120  GACTGAAACTTTAGGACAGGTAGCTACAAAATTAAGAGAACAATTTAAGAATAAGACAAT  179
            |||| | |||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  222  GACTAACACTTTAAGACAGGTAGCTATAAAATTAAGAGAACAATTTAAGAATAAGACAAT  281

Query  180  AGTCTTTAACTCATCCTCAGGAGGGGATCCCGAGGTTGAAATGTTCATATTTAATTGTGG  239
            || |||||| |||||||||||||||||||| ||  ||| |||||||| ||||||||||||
Sbjct  282  AGCCTTTAATTCATCCTCAGGAGGGGATCCAGAAATTGTAATGTTCACATTTAATTGTGG  341

Query  240  AGGGGAGTTTTTCTACTGTAATACATCAAAACTGTTTAATTATACTTTTT-TGG--CTAA  296
            |||||||||||||||||| |||||| |||||||||||||||||||||||  ||   | ||
Sbjct  342  AGGGGAGTTTTTCTACTGCAATACAACAAAACTGTTTAATTATACTTTTAATGATACAAA  401

Query  297  TGGTACTGGGCA-A--A-ATTA-CAGT-ACT-G-G-AAATATCACACTCCAATGCAGAAT  347
               || ||   | |  | | || ||   ||| | | |||||||||||||| |||||||||
Sbjct  402  CATTAGTGAAAATATCACACTAACAAACACTAGTGCAAATATCACACTCCCATGCAGAAT  461

Query  348  AAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTAT  393
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  462  AAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTAT  507

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HIV-1 isolate HLJ13113 from China envelope glycoprotein (env) gene, partial cds

Sequence ID: MK703237.1Length: 531Number of Matches: 1

Range 1: 115 to 529GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
473 bits(256)	2e-128()	365/416(88%)	14/416(3%)	Plus/Plus

Query  1    AGACCCACCAACAATACAAGAAAGAGTATA-AGTCTTGCAGGGGGGAGAGCATTATATGC  59
            ||||||| |||||||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct  115  AGACCCAACAACAATACAAGAAAGAGTATACAAT-TAGCAGGGGGGAGAGCATTATATGC  173

Query  60   AACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAATGTTAGTAAAGGAAATTG  119
            ||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||
Sbjct  174  AACAGGAGACATAATAGGAGACATAAGACAAGCACATTGTAATGTTAGTGCAGGAAATTG  233

Query  120  GACTGAAACTTTAGGACAGGTAGCTACAAAATTAAGAGAACAATT------TAAGAATAA  173
            || ||||||||||  ||||||||||| |||||||||||| |||||      |||||||||
Sbjct  234  GAGTGAAACTTTAAAACAGGTAGCTATAAAATTAAGAGACCAATTTAAGAATAAGAATAA  293

Query  174  GACAATAGTCTTTAACTCATCCTCAGGAGGGGATCCCGAGGTTGAAATGTTCATATTTAA  233
            ||||||||||||||| ||||||||||||||||| || ||  ||  |||| ||| ||||||
Sbjct  294  GACAATAGTCTTTAATTCATCCTCAGGAGGGGACCCAGAAATTATAATGCTCACATTTAA  353

Query  234  TTGTGGAGGGGAGTTTTTCTACTGTAATACATCAAAACTGTTTAATTATACTTTTTTGGC  293
            ||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||   |||
Sbjct  354  TTGTGGAGGTGAGTTCTTCTACTGTAATACAACAAAACTGTTTAATTATACTTTACAGGC  413

Query  294  TAATGGTACTGGGCAAAATT-ACA-G-TACT---GGAAATATCACACTCCAATGCAGAAT  347
            ||||| |||| |||||   | | | | ||||   |||| ||||||||||| |||||||||
Sbjct  414  TAATGATACTTGGCAAGGGTCAAACGATACTAACGGAACTATCACACTCCCATGCAGAAT  473

Query  348  AAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCA  403
            || ||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct  474  AAGACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATACCCCCCCCA  529

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HIV-1 isolate DEMB12CN006 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds

Sequence ID: KP109511.1Length: 8998Number of Matches: 1

Range 1: 6512 to 6926GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
457 bits(247)	2e-123()	362/416(87%)	14/416(3%)	Plus/Plus

Query  1     AGACCCACCAACAATACAAGAAAGAGTATA-AGTCTTGCAGGGGGGAGAGCATTATATGC  59
             ||||||| |||||||||||||||||||||| ||| | |||||||| ||||| ||||||||
Sbjct  6512  AGACCCAGCAACAATACAAGAAAGAGTATACAGT-TAGCAGGGGGAAGAGCCTTATATGC  6570

Query  60    AACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAATGTTAGTAAAGGAAATTG  119
             ||||||| | ||||||||||| |||||||||||||||||||||||||||  |  ||||||
Sbjct  6571  AACAGGACAAATAATAGGAGACATAAGACAAGCACATTGTAATGTTAGTGCAAAAAATTG  6630

Query  120   GACTGAAACTTTAGGACAGGTAGCTACAAAATTAAGAGAACAATTTAAGAATAAGACAAT  179
             ||||||||||||| ||||||| || | |||||||| ||| |||||| |||||||||||||
Sbjct  6631  GACTGAAACTTTAAGACAGGTGGCCAGAAAATTAAAAGACCAATTTGAGAATAAGACAAT  6690

Query  180   AGTCTTTAACTCATCCTCAGGAGGGGATCCCGAGGTTGAAATGTTCATATTTAATTGTGG  239
             | ||||| |   |||||||||||||||||  || ||||| ||| ||| | ||||||||||
Sbjct  6691  AATCTTTCAGCAATCCTCAGGAGGGGATCTAGAAGTTGAGATGCTCACACTTAATTGTGG  6750

Query  240   AGGGGAGTTTTTCTACTGTAATACATCAAAACTGTTTAATTATACTTTTTTGGCTAATGG  299
             |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||
Sbjct  6751  AGGGGAGTTTTTCTACTGTAATACATCAAAACTGTTTAATTATACTCTCCTGGCTAATGG  6810

Query  300   TACTGGGCAAAATT-A--CAGTACT---GGAAAT---A---TCACACTCCAATGCAGAAT  347
             |||| |||||     |  |||||||   ||||||   |   ||||||||| |||||||||
Sbjct  6811  TACTTGGCAAGGGCCAAACAGTACTAATGGAAATGGCACACTCACACTCCCATGCAGAAT  6870

Query  348   AAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCA  403
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  6871  AAAACAAATCATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCA  6926

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HIV-1 isolate HLJ13041 from China envelope glycoprotein (env) gene, partial cds

Sequence ID: MK703173.1Length: 531Number of Matches: 1

Range 1: 115 to 529GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
451 bits(244)	1e-121()	363/418(87%)	18/418(4%)	Plus/Plus

Query  1    AGACCCACCAACAATACAAGAAAGAGTATA-AGTCTTGCAGGGGGGAGAGCATTATATGC  59
            ||||||| ||||||||||||||| |||||| ||| | | |||||||||||||||||||||
Sbjct  115  AGACCCAGCAACAATACAAGAAAAAGTATACAGT-TAGTAGGGGGGAGAGCATTATATGC  173

Query  60   AACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAATGTTAGTAAAGGAAATTG  119
            |||||||||||||||||||||||||||||||||||||||||||||||||  ||  || ||
Sbjct  174  AACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAATGTTAGTGCAGACAAGTG  233

Query  120  GACTGAAACTTTAGGACAGGTAGCTACAAAATTAAGAGAACAATTTAAGAATAAGACAAT  179
            || | ||||||||  | |||| |||| |||||||||||| ||||||||||||||||||||
Sbjct  234  GAATAAAACTTTAACAGAGGTGGCTAAAAAATTAAGAGACCAATTTAAGAATAAGACAAT  293

Query  180  AGTCTTTAACTCATCCTCAGGAGGGGATCCCGAGGTTGAAATGTTCATATTTAATTGTGG  239
            ||||||| |  || |||||||||||||||| ||  ||| |||||||| ||||||||||||
Sbjct  294  AGTCTTTCAGCCACCCTCAGGAGGGGATCCAGAAATTGTAATGTTCACATTTAATTGTGG  353

Query  240  AGGGGAGTTTTTCTACTGTAATACATCAAAACTGTTTAATTATACTTTTTTGGCTAATGG  299
            |||||| |||||||||||||||||| |||||||||||||| |||||||  ||||||||| 
Sbjct  354  AGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAATCATACTTTACTGGCTAATGA  413

Query  300  TACTGGGCAAAATTAC--AGTACTGG-AA-A-------T---ATCACACTCCAATGCAGA  345
            ||||||| || | |||  || ||||| || |       |   |||||||||| |||||||
Sbjct  414  TACTGGG-AATAGTACTGAG-ACTGGGAATAACGGAAGTGTCATCACACTCCCATGCAGA  471

Query  346  ATAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCA  403
            |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct  472  ATAAAACAAATTATAAACAGATGGCAGGAAGTAGGAAAAGCAATGTATACCCCTCCCA  529

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HIV-1 isolate BJOX007000.e01 from China tat protein (tat) gene, partial cds; rev protein (rev) and vpu protein (vpu) genes, complete cds; nonfunctional env protein (env) gene, complete sequence; and nef protein (nef) gene, partial cds

Sequence ID: KM217685.1Length: 3044Number of Matches: 1

Range 1: 1255 to 1663GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
451 bits(244)	1e-121()	360/414(87%)	16/414(3%)	Plus/Plus

Query  1     AGACCCACCAACAATACAAGAAAGAGTATA-AGTCTTGCAGGGGGGAGAGCATTATATGC  59
             ||||||| |||||||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct  1255  AGACCCAACAACAATACAAGAAAGAGTATACAAT-TAGCAGGGGGGAGAGCATTATATGC  1313

Query  60    AACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAATGTTAGTAAAGGAAATTG  119
             ||||||||| ||| |||||||||||| || |||| ||||||||||||||  |||||| ||
Sbjct  1314  AACAGGAGATATAGTAGGAGATATAAAACGAGCATATTGTAATGTTAGTGCAGGAAAGTG  1373

Query  120   GACTGAAACTTTAGGACAGGTAGCTACAAAATTAAGAGAACAATTT--A-AG---AATAA  173
             || | ||||||||| | ||||||||| |||||||||||| ||||||  | ||   |||||
Sbjct  1374  GAATAAAACTTTAGAAAAGGTAGCTATAAAATTAAGAGACCAATTTGAACAGAAAAATAA  1433

Query  174   GACAATAGTCTTTAACTCATCCTCAGGAGGGGATCCCGAGGTTGAAATGTTCATATTTAA  233
             |||||||||||||||  ||||||||||||||||||| || |||| |||| |||  |||||
Sbjct  1434  GACAATAGTCTTTAAGCCATCCTCAGGAGGGGATCCAGAAGTTGTAATGCTCACGTTTAA  1493

Query  234   TTGTGGAGGGGAGTTTTTCTACTGTAATACATCAAAACTGTTTAATTATACTTTTTTGGC  293
             |||||||||||| |||||||||||||||||| ||||||||||||||||||||||  ||||
Sbjct  1494  TTGTGGAGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAATTATACTTTGCTGGC  1553

Query  294   TAATGGTACTGGGCAAAATTACAGTACTGGAAA---T-ATCACACTCCAATGCAGAATAA  349
             ||||| |||| |||||     ||  ||  ||||   | |||| ||||| |||||||||||
Sbjct  1554  TAATGATACTTGGCAA-GGGGCA-AAC--GAAAGTTTCATCATACTCCCATGCAGAATAA  1609

Query  350   AACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCA  403
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1610  AACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCA  1663

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HIV-1 isolate YA113-4-14 from China envelope glycoprotein (env) gene, partial cds

Sequence ID: MH541695.1Length: 1530Number of Matches: 1

Range 1: 901 to 1317GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
451 bits(244)	1e-121()	364/419(87%)	19/419(4%)	Plus/Plus

Query  1     AGACCCACCAACAATACAAGAAAGAGTATA-AGTCTTGCAGGGGGGAGAGCATTATATGC  59
             ||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||||| |
Sbjct  901   AGACCCAACAACAATACAAGAAAGAGTATACAGT-TAGCAGGGGGGAGAGCATTATATAC  959

Query  60    AACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAATGTTAGTAAAGGAAATTG  119
             ||||||| | ||||||||| |||||||||||||||| ||||||||||||  |||||||||
Sbjct  960   AACAGGACAAATAATAGGAAATATAAGACAAGCACACTGTAATGTTAGTGCAGGAAATTG  1019

Query  120   GACTGAAACTTTAGGACAGGTAGCTACAAAATTAAGAGAACAATT------TAAGAATAA  173
             || ||||||||||  ||||||||||| |||||||||||| |||||      |||||||||
Sbjct  1020  GAGTGAAACTTTAAAACAGGTAGCTATAAAATTAAGAGACCAATTTGAACATAAGAATAA  1079

Query  174   GACAATAGTCTTTAACTCATCCTCAGGAGGGGATCCCGAGGTTGAAATGTTCATATTTAA  233
             |||||||||||||||  ||||||||||||||||||| ||  ||| |||| ||| | ||||
Sbjct  1080  GACAATAGTCTTTAAGCCATCCTCAGGAGGGGATCCAGAAATTGTAATGCTCACACTTAA  1139

Query  234   TTGTGGAGGGGAGTTTTTCTACTGTAATACATCAAAACTGTTTAATTATACTTT-TTTGG  292
             |||||||||||| |||||||||||||||||| |||||||||||||  |||||||   |||
Sbjct  1140  TTGTGGAGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAACCATACTTTGACTGG  1199

Query  293   CTAATGGTACTGGGCAAAA-TTACAG--TACT--GGAAA---T-ATCACACTCCAATGCA  343
               ||||||||| ||||||| | | ||  ||||   ||||   | |||||||||| |||||
Sbjct  1200  -GAATGGTACTTGGCAAAAGTCAGAGAATACTAATGAAAGTGTCATCACACTCCCATGCA  1258

Query  344   GAATAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCC  402
             ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1259  GAATAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAGAGCAATGTATGCCCCTCCC  1317

Download GenBank Graphics Next Previous Descriptions

HIV-1 isolate BJOX007000.e09 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds

Sequence ID: KM217690.1Length: 2577Number of Matches: 1

Range 1: 901 to 1309GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
446 bits(241)	5e-120()	359/414(87%)	16/414(3%)	Plus/Plus

Query  1     AGACCCACCAACAATACAAGAAAGAGTATA-AGTCTTGCAGGGGGGAGAGCATTATATGC  59
             ||||||| |||||||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct  901   AGACCCAACAACAATACAAGAAAGAGTATACAAT-TAGCAGGGGGGAGAGCATTATATGC  959

Query  60    AACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAATGTTAGTAAAGGAAATTG  119
             ||||||||| ||| |||||||||||| || |||| ||||||||||||||  |||||| ||
Sbjct  960   AACAGGAGATATAGTAGGAGATATAAAACGAGCATATTGTAATGTTAGTGCAGGAAAGTG  1019

Query  120   GACTGAAACTTTAGGACAGGTAGCTACAAAATTAAGAGAACAATTT------AAGAATAA  173
             || | ||||||||| | ||||||||| |||||||||||| ||||||      ||||||||
Sbjct  1020  GAATAAAACTTTAGAAAAGGTAGCTATAAAATTAAGAGACCAATTTGAACAGAAGAATAA  1079

Query  174   GACAATAGTCTTTAACTCATCCTCAGGAGGGGATCCCGAGGTTGAAATGTTCATATTTAA  233
             |||||||||||||||  ||||||||||||||||||| || |||| |||| |||  |||||
Sbjct  1080  GACAATAGTCTTTAAGCCATCCTCAGGAGGGGATCCAGAAGTTGTAATGCTCACGTTTAA  1139

Query  234   TTGTGGAGGGGAGTTTTTCTACTGTAATACATCAAAACTGTTTAATTATACTTTTTTGGC  293
             |||||||||||| |||||||||||||||||| ||||||||||||||||||||||   |||
Sbjct  1140  TTGTGGAGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAATTATACTTTGCCGGC  1199

Query  294   TAATGGTACTGGGCAAAATTACAGTACTGGAAA---T-ATCACACTCCAATGCAGAATAA  349
             ||||| |||| |||||     ||  ||  ||||   | |||| ||||| |||||||||||
Sbjct  1200  TAATGATACTTGGCAA-GGGGCA-AAC--GAAAGTTTCATCATACTCCCATGCAGAATAA  1255

Query  350   AACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCA  403
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1256  AACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCA  1309

Taxonomy

100 sequences selected
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Lineage

Lineage Report
Organism	Blast Name	Score	Number of Hits	Description
Lentivirus	viruses		110
.Human immunodeficiency virus 1	viruses	497	109	Human immunodeficiency virus 1 hits
.Human immunodeficiency virus	viruses	414	1	Human immunodeficiency virus hits

Organism

Organism Report
Description	Score	E value	Accession
Human immunodeficiency virus 1 [viruses] Next Previous First
HIV-1 isolate HLJ15167 from China envelope glycoprotein (env) gene, partial cds	497	1e-135	MK703484
HIV-1 isolate 2888 from China envelope glycoprotein (env) gene, partial cds	486	3e-132	JQ901015
HIV-1 isolate 2874 from China envelope glycoprotein (env) gene, partial cds	481	1e-130	JQ901003
HIV-1 isolate JL15025 from China envelope glycoprotein (env) gene, partial cds	477	2e-129	MH120099
HIV-1 isolate HLJ13113 from China envelope glycoprotein (env) gene, partial cds	473	2e-128	MK703237
HIV-1 isolate DEMB12CN006 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	457	2e-123	KP109511
HIV-1 isolate HLJ13041 from China envelope glycoprotein (env) gene, partial cds	451	1e-121	MK703173
HIV-1 isolate BJOX007000.e01 from China tat protein (tat) gene, partial cds; rev protein (rev) and vpu protein (vpu) genes, complete cds; nonfunctional env protein (env) gene, complete sequence; and nef protein (nef) gene, partial cds	451	1e-121	KM217685
HIV-1 isolate YA113-4-14 from China envelope glycoprotein (env) gene, partial cds	451	1e-121	MH541695
HIV-1 isolate BJOX007000.e09 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	446	5e-120	KM217690
HIV-1 isolate BJOX007000.e08 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	446	5e-120	KM217689
HIV-1 isolate BJMP3194B from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) gene, complete cds; nonfunctional vpr protein (vpr) gene, complete sequence; and tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	446	5e-120	KP418806
HIV-1 isolate YA113-4-12 from China envelope glycoprotein (env) gene, partial cds	446	5e-120	MH541693
HIV-1 isolate JL15007 from China envelope glycoprotein (env) gene, partial cds	444	2e-119	MH120081
HIV-1 isolate BJOX007000.e10 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	442	6e-119	KM217691
HIV-1 isolate DEMB09CN002 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nonfunctional nef protein (nef) gene, complete sequence	442	6e-119	KC596066
HIV-1 isolate 2854 from China envelope glycoprotein (env) gene, partial cds	442	6e-119	JQ900987
HIV-1 isolate BJOX007000.e04 from China nonfunctional env protein (env) gene, partial sequence; and vpu protein (vpu), rev protein (rev), tat protein (tat), and nef protein (nef) genes, partial cds	440	2e-118	KM217688
HIV-1 isolate YA113-3-11 from China envelope glycoprotein (env) gene, partial cds	440	2e-118	MH541668
HIV-1 isolate YA113-3-2 from China envelope glycoprotein (env) gene, partial cds	440	2e-118	MH541659
HIV-1 isolate YA113-2-29 from China envelope glycoprotein (env) gene, partial cds	440	2e-118	MH541652
HIV-1 isolate BJOX007000.e03 from China vpu protein (vpu) gene, partial cds; nonfunctional env protein (env) gene, complete sequence; and rev protein (rev), tat protein (tat), and nef protein (nef) genes, partial cds	438	8e-118	KM217687
HIV-1 isolate YA113-3-23 from China envelope glycoprotein (env) gene, partial cds	435	1e-116	MH541680
HIV-1 isolate YA113-3-21 from China envelope glycoprotein (env) gene, partial cds	435	1e-116	MH541678
HIV-1 isolate YA113-3-18 from China envelope glycoprotein (env) gene, partial cds	435	1e-116	MH541675
HIV-1 isolate YA113-3-16 from China envelope glycoprotein (env) gene, partial cds	435	1e-116	MH541673
HIV-1 isolate YA113-3-15 from China envelope glycoprotein (env) gene, partial cds	435	1e-116	MH541672
HIV-1 isolate YA113-3-22 from China envelope glycoprotein (env) gene, partial cds	435	1e-116	MH541679
HIV-1 isolate YA113-3-13 from China envelope glycoprotein (env) gene, partial cds	435	1e-116	MH541670
HIV-1 isolate YA113-3-12 from China envelope glycoprotein (env) gene, partial cds	435	1e-116	MH541669
HIV-1 isolate YA113-3-9 from China envelope glycoprotein (env) gene, partial cds	435	1e-116	MH541666
HIV-1 isolate YA113-3-7 from China envelope glycoprotein (env) gene, partial cds	435	1e-116	MH541664
HIV-1 isolate YA113-2-6 from China envelope glycoprotein (env) gene, partial cds	435	1e-116	MH541629
HIV-1 isolate YA113-2-12 from China envelope glycoprotein (env) gene, partial cds	435	1e-116	MH541635
HIV-1 isolate YA113-2-2 from China envelope glycoprotein (env) gene, partial cds	435	1e-116	MH541625
HIV-1 isolate YA113-1-19 from China envelope glycoprotein (env) gene, partial cds	435	1e-116	MH541611
HIV-1 isolate YA113-1-8 from China envelope glycoprotein (env) gene, partial cds	435	1e-116	MH541600
HIV-1 isolate BJMP3294B from China, complete genome	433	4e-116	KU724105
HIV-1 isolate BJOX004000.e30 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	431	1e-115	KM217637
HIV-1 isolate BJMP3037B from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	431	1e-115	KP418805
HIV-1 isolate 2889 from China envelope glycoprotein (env) gene, partial cds	429	5e-115	JQ901016
HIV-1 isolate YA113-3-17 from China envelope glycoprotein (env) gene, partial cds	429	5e-115	MH541674
HIV-1 isolate YA113-3-19 from China envelope glycoprotein (env) gene, partial cds	429	5e-115	MH541676
HIV-1 isolate YA113-3-20 from China envelope glycoprotein (env) gene, partial cds	429	5e-115	MH541677
HIV-1 isolate BJOX004000.e40 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217640
HIV-1 isolate BJOX004000.e28 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217635
HIV-1 isolate BJOX004000.e25 from China envelope glycoprotein (env), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217632
HIV-1 isolate BJOX004000.e24 from China nonfunctional env protein (env) gene, partial sequence; and rev protein (rev) and tat protein (tat) genes, partial cds	425	6e-114	KM217631
HIV-1 isolate BJOX004000.e21 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217628
HIV-1 isolate BJOX004000.e20 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217627
HIV-1 isolate BJOX004000.e18 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217625
HIV-1 isolate BJOX004000.e19 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217626
HIV-1 isolate BJOX004000.e22 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217629
HIV-1 isolate BJOX004000.e23 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217630
HIV-1 isolate BJOX004000.e26 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217633
HIV-1 isolate BJOX004000.e27 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217634
HIV-1 isolate BJOX004000.e37 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217638
HIV-1 isolate BJOX004000.e12 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217623
HIV-1 isolate BJOX004000.e10 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217622
HIV-1 isolate BJOX004000.e07 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217620
HIV-1 isolate BJOX004000.e06 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217619
HIV-1 isolate BJOX004000.e03 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217617
HIV-1 isolate BJOX004000.e02 from China nonfunctional env protein (env) gene, partial sequence; and rev protein (rev) and tat protein (tat) genes, partial cds	425	6e-114	KM217616
HIV-1 isolate BJOX004000.e01 from China envelope glycoprotein (env), vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	425	6e-114	KM217615
HIV-1 isolate BJYA180.8 envelope glycoprotein (env) gene, complete cds	424	2e-113	MN617388
HIV-1 isolate BJYA119.6 envelope glycoprotein (env) gene, complete cds	420	3e-112	MN617385
HIV-1 isolate BJOX004000.e39 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	420	3e-112	KM217639
HIV-1 isolate BJOX004000.e29 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	420	3e-112	KM217636
HIV-1 isolate BJOX004000.e13 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	420	3e-112	KM217624
HIV-1 isolate BJOX004000.e08 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	420	3e-112	KM217621
HIV-1 isolate BJOX004000.e05 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	420	3e-112	KM217618
HIV-1 isolate BJYA192.4 envelope glycoprotein (env) gene, complete cds	418	1e-111	MN617390
HIV-1 isolate BJOX007000.e02 from China tat protein (tat) gene, partial cds; and rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds	418	1e-111	KM217686
HIV-1 isolate BJOX007000.02.3 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	418	1e-111	HM215370
HIV-1 isolate HLJ10028 from China envelope glycoprotein (env) gene, partial cds	414	1e-110	MK702958
HIV-1 isolate 92DGi6-14922 from South Korea envelope glycoprotein (env) gene, complete cds	414	1e-110	KY820504
HIV-1 isolate R06.CD.01.H01.01 from USA envelope glycoprotein (env), vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	414	1e-110	OQ820328
HIV-1 isolate 2864 from China envelope glycoprotein (env) gene, partial cds	412	5e-110	JQ900995
HIV-1 isolate BJSJS2016S128 from China nonfunctional envelope glycoprotein (env) gene, partial sequence	411	2e-109	MH920920
HIV-1 isolate BJYA187.8 envelope glycoprotein (env) gene, complete cds	409	6e-109	MN617389
HIV-1 isolate 92DGi6-14921 from South Korea envelope glycoprotein (env) gene, complete cds	409	6e-109	KY820503
HIV-1 isolate 92DGi6-13344 from South Korea envelope glycoprotein (env) gene, complete cds	409	6e-109	KU869604
HIV-1 isolate R06.CD.02.C09.01 from USA envelope glycoprotein (env), vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	409	6e-109	OQ820331
HIV-1 isolate 92DGi6-Jun-1992 from South Korea, partial genome	409	6e-109	MT559046
HIV-1 isolate CNHLJSM06059 from China envelope glycoprotein (env) gene, complete cds	409	6e-109	EU131799
HIV-1 p2c040-05 from USA envelope glycoprotein (env) gene, partial cds	409	6e-109	AF137810
HIV-1 isolate Donor-P-93KPS10-13292/10994/10992 from South Korea envelope glycoprotein (env), rev protein (rev), and tat protein (tat) genes, partial cds	407	2e-108	KU896112
HIV-1 isolate 2853 from China envelope glycoprotein (env) gene, partial cds	407	2e-108	JQ900986
HIV-1 isolate 1997USGG970307p4 from USA envelope glycoprotein (env) gene, partial cds	407	2e-108	AY302918
HIV-1 p2c040-12 from USA envelope glycoprotein (env) gene, partial cds	403	3e-107	AF137813
HIV-1 isolate 92KTG3-HP-14 from South Korea, complete genome	401	1e-106	MN043604
HIV-1 isolate 191286 from China, complete genome	401	1e-106	PP483792
HIV-1 isolate HP-14:92KTG3-16502 from South Korea, partial genome	401	1e-106	KJ140259
HIV-1 isolate 89886FL_2001 from Argentina, partial genome	401	1e-106	KY968408
HIV-1 isolate IC.277.0.D4 from USA envelope glycoprotein (env) gene, partial cds	401	1e-106	KX129285
HIV-1 isolate HP-14-93KTG10-13333/13259 from South Korea envelope glycoprotein (env) gene, complete cds	401	1e-106	KU869558
HIV-1 isolate H19768_06S3 from Netherlands envelope glycoprotein gene, partial cds	401	1e-106	JQ903228
HIV-1 isolate YA113-3-8 from China envelope glycoprotein (env) gene, partial cds	401	1e-106	MH541665
HIV-1 isolate 232.7.1C11 from Netherlands envelope glycoprotein (env), rev protein (rev), and tat protein (tat) genes, partial cds	401	1e-106	JF910177
HIV-1 isolate H4.007.1E8 from Netherlands envelope glycoprotein (env) gene, complete cds	401	1e-106	EU744103
HIV-1 isolate H4.007.1C11 from Netherlands envelope glycoprotein (env) gene, complete cds	401	1e-106	EU744102
HIV-1 isolate H4.007.1C10 from Netherlands envelope glycoprotein (env) gene, complete cds	401	1e-106	EU744101
HIV-1 isolate H4.007.1C9 from Netherlands envelope glycoprotein (env) gene, complete cds	401	1e-106	EU744100
HIV-1 isolate ES6v1ed8 from USA envelope glycoprotein (env) gene, complete cds	401	1e-106	DQ410107
HIV-1 p9c063-12 from USA envelope glycoprotein (env) gene, partial cds	401	1e-106	AF138578
HIV-1 p2c051-19 from USA envelope glycoprotein (env) gene, partial cds	401	1e-106	AF137820
HIV-1 isolate 4675_4 from USA nonfunctional envelope glycoprotein (env) gene, partial sequence	399	4e-106	MW189238
HIV-1 isolate 7242P00a from Thailand, partial genome	398	1e-105	MT121823
HIV-1 isolate 7242P00_16 from Thailand, partial genome	394	2e-104	MT121817
Human immunodeficiency virus [viruses] Next Previous First
Human immunodeficiency virus isolate HN40.40 envelope glycoprotein (env) gene, complete cds	414	1e-110	MN642098

Taxonomy

Taxonomy Report
Taxonomy	Number of hits	Number of Organisms	Description
Lentivirus	110	2
. Human immunodeficiency virus 1	109	1	Human immunodeficiency virus 1 hits
. Human immunodeficiency virus	1	1	Human immunodeficiency virus hits

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Distribution of the top 100 Blast Hits on 100 subject sequences

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Sequences producing significant alignments