- 100 sequences selected
- Job Title
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ref|WP_345786905.1|
- RID
- W1FH348T013 Search expires on 03-01 02:33 am
- Program
- BLASTP
Help
Program version: BLASTP 2.16.1+
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Citation
ReferenceStephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.Reference - compositional score matrix adjustmentStephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
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Citation
- Database
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nr
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See details
Title:All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects
Molecule Type:Protein
Update date:2025/02/26
Number of sequences:877105751
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See details
- Query ID
- WP_345786905.1 WP_345786905.1
- Description
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hypothetical protein, partial [Acinetobacter baumannii]
- Molecule type
- amino acid
- Query Length
- 111
- Other reports
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Distance tree of results
Multiple alignment
MSA viewer
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Reports are generated on using all sequences producing significant alignments. To generate reports on a subset of sequences, use the report links in the Descriptions tab while selecting specific sequences.
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Compare these results against the new Clustered nr database
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Clustered nr is the standard NCBI nr database clustered with each sequence within 90% identity and 90% length to other members of the cluster. Your BLAST search runs against a single representative sequence for each cluster.
The representative is used as a title for the cluster and can be used to fetch all the other members.
Clustered nr is smaller and more compact for searching. Results for a clustered nr search have more taxonomic depth than standard nr results.
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Sequences producing significant alignments
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Subject sequences can be removed or added from within the Descriptions tab and the selections will carry through to the other tabbed views. Use the formats in Download to save data for selected sequences. Manage Columns adds and subtracts data columns from the Descriptions table. Use the click outs to see the selected results in GenPept , Graphical Sequence Viewer , BLAST Tree View , COBALT multiple sequence alignment .
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- hover to see the title
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- Alignment Scores
- < 40
- 40 - 50
- 50 - 80
- 80 - 200
- >= 200
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The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
- 100 sequences selected
- Help
To select sequences, go to the Descriptions tab
Putative conserved domains have been detected, click on the image below for detailed results.
Distribution of the top 100 Blast Hits on 100 subject sequences
Query120406080100 -
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- Alignment view: Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
- CDS feature: Show annotated coding region and translation. more...
- Line length: Number of letters to show on one line in an alignment.
- 100 sequences selected
- Help
To select sequences, go to the Descriptions tab
Loading alignment... for sequences ref|WP_345786905.1|,ref|WP_255430286.1|,gb|UAJ49005.1|,ref|NP_579895.1|,gb|ASV46287.1| AlignDB=on Reading indexes 1-5hypothetical protein, partial [Acinetobacter baumannii]WP_345786905.11111-
See 1 more title(s)
See all Identical Proteins(IPG) hypothetical protein [Acinetobacter baumannii]MEN2648816.1111
Identical Proteins-Identical proteins to WP_345786905.1Alignment statistics for match #1 Score Expect Method Identities Positives Gaps Frame 224 bits(571) 2e-73() Compositional matrix adjust. 111/111(100%) 111/111(100%) 0/111(0%) Query 1 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 60 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN Sbjct 1 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 60 Query 61 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSRRYRL 111 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSRRYRL Sbjct 61 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSRRYRL 111DDE-type integrase/transposase/recombinase [Saccharothrix mutabilis]WP_255430286.15131Alignment statistics for match #1 Score Expect Method Identities Positives Gaps Frame 229 bits(585) 2e-70() Compositional matrix adjust. 111/111(100%) 111/111(100%) 0/111(0%) Query 1 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 60 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN Sbjct 181 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 240 Query 61 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSRRYRL 111 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSRRYRL Sbjct 241 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSRRYRL 291envelope glycoprotein, partial [Human immunodeficiency virus 1]UAJ49005.12461Alignment statistics for match #1 Score Expect Method Identities Positives Gaps Frame 217 bits(553) 8e-69() Compositional matrix adjust. 106/106(100%) 106/106(100%) 0/106(0%) Query 1 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 60 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN Sbjct 37 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 96 Query 61 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGS 106 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGS Sbjct 97 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGS 142Envelope transmembrane glycoprotein gp41 [Human immunodeficiency virus 1]NP_579895.13451-
See 4 more title(s)
See all Identical Proteins(IPG) envelope glycoprotein, partial [Human immunodeficiency virus 1]ABY63546.1345envelope glycoprotein, partial [Human immunodeficiency virus 1]ABY63559.1345envelope glycoprotein, partial [Human immunodeficiency virus 1]ABY63560.1345envelope glycoprotein, partial [Human immunodeficiency virus 1]ABY63570.1345
Gene-associated gene detailsIdentical Proteins-Identical proteins to NP_579895.1Alignment statistics for match #1 Score Expect Method Identities Positives Gaps Frame 219 bits(558) 3e-68() Compositional matrix adjust. 106/106(100%) 106/106(100%) 0/106(0%) Query 1 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 60 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN Sbjct 136 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 195 Query 61 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGS 106 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGS Sbjct 196 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGS 241envelope glycoprotein, partial [Human immunodeficiency virus 1]ASV46287.12401Alignment statistics for match #1 Score Expect Method Identities Positives Gaps Frame 215 bits(548) 4e-68() Compositional matrix adjust. 105/106(99%) 105/106(99%) 0/106(0%) Query 1 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 60 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN Sbjct 98 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 157 Query 61 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGS 106 RVRQGYSPLSFQTHLP PRGPDRPEGIEEEGGERDRDRSIRLVNGS Sbjct 158 RVRQGYSPLSFQTHLPIPRGPDRPEGIEEEGGERDRDRSIRLVNGS 203Loading alignment... for sequences gb|UAJ49006.1|,gb|UAJ49010.1|,gb|UAJ49008.1|,gb|UAJ49018.1|,gb|UAJ49022.1| AlignDB=on Reading indexes 6-10envelope glycoprotein, partial [Human immunodeficiency virus 1]UAJ49006.12461Alignment statistics for match #1 Score Expect Method Identities Positives Gaps Frame 215 bits(548) 5e-68() Compositional matrix adjust. 105/106(99%) 105/106(99%) 0/106(0%) Query 1 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 60 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN Sbjct 37 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 96 Query 61 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGS 106 RVRQGYSPLSFQTHLP PRGPDRPEGIEEEGGERDRDRSIRLVNGS Sbjct 97 RVRQGYSPLSFQTHLPIPRGPDRPEGIEEEGGERDRDRSIRLVNGS 142envelope glycoprotein, partial [Human immunodeficiency virus 1]UAJ49010.12461-
See 4 more title(s)
See all Identical Proteins(IPG) envelope glycoprotein, partial [Human immunodeficiency virus 1]UAJ49011.1246envelope glycoprotein, partial [Human immunodeficiency virus 1]UAJ49013.1246envelope glycoprotein, partial [Human immunodeficiency virus 1]UAJ49015.1246envelope glycoprotein, partial [Human immunodeficiency virus 1]UAJ49017.1246
Identical Proteins-Identical proteins to UAJ49010.1Alignment statistics for match #1 Score Expect Method Identities Positives Gaps Frame 215 bits(548) 5e-68() Compositional matrix adjust. 105/106(99%) 105/106(99%) 0/106(0%) Query 1 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 60 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN Sbjct 37 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 96 Query 61 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGS 106 RVRQGYSPLSFQTHLP PRGPDRPEGIEEEGGERDRDRSIRLVNGS Sbjct 97 RVRQGYSPLSFQTHLPIPRGPDRPEGIEEEGGERDRDRSIRLVNGS 142envelope glycoprotein, partial [Human immunodeficiency virus 1]UAJ49008.12461Alignment statistics for match #1 Score Expect Method Identities Positives Gaps Frame 215 bits(548) 5e-68() Compositional matrix adjust. 105/106(99%) 105/106(99%) 0/106(0%) Query 1 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 60 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN Sbjct 37 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 96 Query 61 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGS 106 RVRQGYSPLSFQTHLP PRGPDRPEGIEEEGGERDRDRSIRLVNGS Sbjct 97 RVRQGYSPLSFQTHLPIPRGPDRPEGIEEEGGERDRDRSIRLVNGS 142envelope glycoprotein, partial [Human immunodeficiency virus 1]UAJ49018.12461Alignment statistics for match #1 Score Expect Method Identities Positives Gaps Frame 215 bits(547) 6e-68() Compositional matrix adjust. 105/106(99%) 105/106(99%) 0/106(0%) Query 1 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 60 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN Sbjct 37 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 96 Query 61 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGS 106 RVRQGYSPLSFQTHLP PRGPDRPEGIEEEGGERDRDRSIRLVNGS Sbjct 97 RVRQGYSPLSFQTHLPIPRGPDRPEGIEEEGGERDRDRSIRLVNGS 142envelope glycoprotein, partial [Human immunodeficiency virus 1]UAJ49022.12461Alignment statistics for match #1 Score Expect Method Identities Positives Gaps Frame 215 bits(547) 7e-68() Compositional matrix adjust. 105/106(99%) 105/106(99%) 0/106(0%) Query 1 EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 60 EESQNQQEKNEQE LELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN Sbjct 37 EESQNQQEKNEQESLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVN 96 Query 61 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGS 106 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGS Sbjct 97 RVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGS 142 -
Reports
- 100 sequences selected
- Help
To select sequences, go to the Descriptions tab
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Taxonomy Report Taxonomy Number of hits Number of Organisms Description root 178 18 . Bacteria 3 2 .. Acinetobacter baumannii 2 1 .. Saccharothrix mutabilis 1 1 . Lentivirus 160 7 .. Human immunodeficiency virus 1 88 6 ... HIV-1 M:B_HXB2R 1 1 ... HIV-1 unknown group 4 4 .... Human immunodeficiency virus type 1 (BRU ISOLATE) 1 1 .... Human immunodeficiency virus type 1 (BH8 ISOLATE) 1 1 .... Human immunodeficiency virus type 1 BH10 1 1 .... Human immunodeficiency virus type 1 (HXB3 ISOLATE) 1 1 .. Simian-Human immunodeficiency virus 67 1 . artificial sequences 15 9 .. synthetic construct 7 1 .. vectors 7 7 ... HIV-1 vector pNL-DT5R 1 1 ... Vector pX4 HIVivo 1 1 ... HIV-1 vector pMN4/LSDQgtu 1 1 ... HIV-1 vector pNL4-3 1 1 ... Vector pNL4-3_gag-pol(Delta1443-4553)_EGFP 1 1 ... Cloning vector pNHG 1 1 ... Cloning vector pNHG-CapNM 1 1 .. synthetic HIV-1 1 1