(cache)NCBI Blast:gb|PQ511684.1|

Save Search

Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	100
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Feb 19, 2025 7:30 PM
Number of letters	237,251,919,109
Number of sequences	7,971,121
Entrez query	Includes: Severe acute respiratory syndrome coronavirus 2 (taxid:2697049) Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	38
Effective length of query	9501
Effective length of database	236949016511
Effective search space	2251252605871011
Effective search space used	2251252605871011

Your search is limited to records that include: Severe acute respiratory syndrome coronavirus 2 (taxid:2697049)

Job Title

gb|PQ511684.1| ...

RID

VPWUS3DS013 Search expires on 02-25 02:13 am

Download All

Results for

Program

BLASTN

Citation

Database

See details

Title:Nucleotide collection (nt)
Description:The nucleotide collection consists of GenBank+EMBL+DDBJ+PDB+RefSeq sequences, but excludes EST, STS, GSS, WGS, TSA, patent sequences as well as phase 0, 1, and 2 HTGS sequences and sequences longer than 100Mb. The database is non-redundant. Identical sequences have been merged into one entry, while preserving the accession, GI, title and taxonomy information for each entry.
Molecule Type:mixed DNA
Update date:2025/02/22
Number of sequences:112591598

Query ID

PQ511684.1

Description

HIV-1 isolate GB1LV100191 from USA, complete genome ...

Molecule type

nucleic acid

Query Length

9539

Other reports

Distance tree of results MSA viewer

Filter Results

Descriptions

select all
87 sequences selected

, Reading indexes 1-5, displaying indexes 1-5

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq OV377772.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	80.5	80.5	0%	1e-09	100.00%	30383	OV377772.1
2Select seq OV197539.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	80.5	80.5	0%	1e-09	100.00%	30057	OV197539.1
3Select seq OV197189.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	78.7	78.7	0%	5e-09	100.00%	30094	OV197189.1
4Select seq OV196499.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	78.7	78.7	0%	5e-09	100.00%	30525	OV196499.1
5Select seq OV197600.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	76.8	76.8	0%	2e-08	100.00%	30105	OV197600.1
6Select seq OV197136.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	76.8	76.8	0%	2e-08	100.00%	30102	OV197136.1
7Select seq OV196488.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	76.8	76.8	0%	2e-08	100.00%	30094	OV196488.1
8Select seq OV196298.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	76.8	140	1%	2e-08	100.00%	30559	OV196298.1
9Select seq OV196275.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	76.8	144	0%	2e-08	100.00%	30423	OV196275.1
10Select seq OV195924.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	76.8	149	0%	2e-08	100.00%	30333	OV195924.1
11Select seq OV195900.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	76.8	133	1%	2e-08	100.00%	30109	OV195900.1
12Select seq OV195202.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	76.8	153	0%	2e-08	100.00%	30221	OV195202.1
13Select seq OV195277.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	76.8	76.8	0%	2e-08	100.00%	30090	OV195277.1
14Select seq OV016109.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	76.8	76.8	0%	2e-08	100.00%	30090	OV016109.1
15Select seq OV197487.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	75.0	75.0	0%	6e-08	100.00%	30104	OV197487.1
16Select seq OV196273.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	71.3	71.3	0%	8e-07	95.24%	30444	OV196273.1
17Select seq OY643770.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	69.4	69.4	0%	3e-06	97.50%	29846	OY643770.1
18Select seq OY708354.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	0%	1e-05	100.00%	29843	OY708354.1
19Select seq OY694257.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	0%	1e-05	100.00%	29833	OY694257.1
20Select seq OY660716.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	0%	1e-05	97.50%	29830	OY660716.1
21Select seq OY636513.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	100.00%	29868	OY636513.1
22Select seq OY624745.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	100.00%	29841	OY624745.1
23Select seq OY702405.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	97.37%	29864	OY702405.1
24Select seq OY700800.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	100.00%	29828	OY700800.1
25Select seq OY630149.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	100.00%	29449	OY630149.1
26Select seq OY710775.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	97.37%	29837	OY710775.1
27Select seq OY688217.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	100.00%	29857	OY688217.1
28Select seq OY688032.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	97.44%	29838	OY688032.1
29Select seq OY679187.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	97.37%	29846	OY679187.1
30Select seq OY676332.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	93.33%	29828	OY676332.1
31Select seq OY695939.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	93.18%	29845	OY695939.1
32Select seq OY658535.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	95.12%	29842	OY658535.1
33Select seq OY650818.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	97.37%	29859	OY650818.1
34Select seq OY654510.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	100.00%	29834	OY654510.1
35Select seq OV196177.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	97.37%	30003	OV196177.1
36Select seq OY636767.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	1e-04	100.00%	29479	OY636767.1
37Select seq OY636195.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	1e-04	100.00%	29852	OY636195.1
38Select seq OY632263.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	1e-04	100.00%	29431	OY632263.1
39Select seq OY630371.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	1e-04	100.00%	29839	OY630371.1
40Select seq OY629456.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	1e-04	100.00%	29806	OY629456.1
41Select seq OY712705.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	1e-04	100.00%	29840	OY712705.1
42Select seq OY712376.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	1e-04	100.00%	29858	OY712376.1
43Select seq OY695242.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	1e-04	95.12%	29846	OY695242.1
44Select seq OY694998.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	1e-04	100.00%	29865	OY694998.1
45Select seq OY662395.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	1e-04	100.00%	29831	OY662395.1
46Select seq OY659958.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	1e-04	100.00%	29823	OY659958.1
47Select seq OY652159.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	1e-04	100.00%	29841	OY652159.1
48Select seq OY654433.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	1e-04	100.00%	29830	OY654433.1
49Select seq OV196492.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	1e-04	97.30%	30243	OV196492.1
50Select seq OY637058.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29853	OY637058.1
51Select seq OY635760.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29868	OY635760.1
52Select seq OY635503.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	97.22%	29836	OY635503.1
53Select seq OY628901.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29833	OY628901.1
54Select seq OY629072.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29836	OY629072.1
55Select seq OY626210.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	97.22%	29831	OY626210.1
56Select seq OY625266.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29959	OY625266.1
57Select seq OY698248.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29820	OY698248.1
58Select seq OY697624.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	97.22%	29863	OY697624.1
59Select seq OY697486.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29835	OY697486.1
60Select seq OY703170.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29848	OY703170.1
61Select seq OY630060.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29829	OY630060.1
62Select seq OY717486.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	94.87%	29891	OY717486.1
63Select seq OY711698.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	97.22%	29912	OY711698.1
64Select seq OY689820.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29803	OY689820.1
65Select seq OY684615.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29840	OY684615.1
66Select seq OY680574.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29863	OY680574.1
67Select seq OY679872.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29830	OY679872.1
68Select seq OY676908.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29700	OY676908.1
69Select seq OY672891.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29827	OY672891.1
70Select seq OY695365.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	97.22%	29803	OY695365.1
71Select seq OY693509.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29822	OY693509.1
72Select seq OY691424.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29828	OY691424.1
73Select seq OY658031.2	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	97.22%	29825	OY658031.2
74Select seq OY647872.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29836	OY647872.1
75Select seq OY642760.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29784	OY642760.1
76Select seq OY642376.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	97.22%	29848	OY642376.1
77Select seq OY271421.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	100.00%	29815	OY271421.1
78Select seq OV196890.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	97.22%	30101	OV196890.1
79Select seq OV196584.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	97.22%	30066	OV196584.1
80Select seq OV196467.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	97.22%	30053	OV196467.1
81Select seq OV196096.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	97.22%	29646	OV196096.1
82Select seq OV196022.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	122	0%	5e-04	97.22%	30562	OV196022.1
83Select seq OV196000.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	97.22%	30106	OV196000.1
84Select seq OV195597.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	5e-04	97.22%	30117	OV195597.1
85Select seq OY677355.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	60.2	60.2	0%	0.002	100.00%	29821	OY677355.1
86Select seq OV197187.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	58.4	58.4	0%	0.006	87.80%	30208	OV197187.1
87Select seq OV195847.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	58.4	58.4	0%	0.006	97.06%	30308	OV195847.1

- hover to see the title
- click to show alignments
- Show Conserved Domains
- Alignment Scores
- < 40
- 40 - 50
- 50 - 80
- 80 - 200
- >= 200
- Help
  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
- 87 sequences selected
- Help
Distribution of the top 93 Blast Hits on 87 subject sequences

Query

1
1500
3000
4500
6000
7500
9000
- Alignment view
- CDS feature
- Line length:
- Help
  Alignment view: Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
  
  CDS feature: Show annotated coding region and translation. more...
  
  Line length: Number of letters to show on one line in an alignment.
- 87 sequences selected
- Help
Loading alignment... for sequences gi|2174999037,gi|2165837646,gi|2165836885,gi|2165835433,gi|2165837707 Reading indexes 1-5

Download GenBank Graphics Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV377772.1Length: 30383Number of Matches: 1

Related Information

Range 1: 29854 to 29896GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

80.5 bits(43) 1e-09() 43/43(100%) 0/43(0%) Plus/Plus

Features:

Query 9497 GAGTGTAGATCTCGGTGGTCGCCGTATCATTaaaaaaaaaaaa 9539 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 29854 GAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAA 29896

Download GenBank Graphics Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV197539.1Length: 30057Number of Matches: 1

Related Information

Range 1: 29913 to 29955GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

80.5 bits(43) 1e-09() 43/43(100%) 0/43(0%) Plus/Plus

Features:

Query 9497 GAGTGTAGATCTCGGTGGTCGCCGTATCATTaaaaaaaaaaaa 9539 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 29913 GAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAA 29955

Download GenBank Graphics Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV197189.1Length: 30094Number of Matches: 1

Related Information

Range 1: 29951 to 29992GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

78.7 bits(42) 5e-09() 42/42(100%) 0/42(0%) Plus/Plus

Features:

Query 9498 AGTGTAGATCTCGGTGGTCGCCGTATCATTaaaaaaaaaaaa 9539 |||||||||||||||||||||||||||||||||||||||||| Sbjct 29951 AGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAA 29992

Download GenBank Graphics Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV196499.1Length: 30525Number of Matches: 1

Related Information

Range 1: 30129 to 30170GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

78.7 bits(42) 5e-09() 42/42(100%) 0/42(0%) Plus/Plus

Features:

Query 9498 AGTGTAGATCTCGGTGGTCGCCGTATCATTaaaaaaaaaaaa 9539 |||||||||||||||||||||||||||||||||||||||||| Sbjct 30129 AGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAA 30170

Download GenBank Graphics Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV197600.1Length: 30105Number of Matches: 1

Related Information

Range 1: 29957 to 29997GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

76.8 bits(41) 2e-08() 41/41(100%) 0/41(0%) Plus/Plus

Features:

Query 9499 GTGTAGATCTCGGTGGTCGCCGTATCATTaaaaaaaaaaaa 9539 ||||||||||||||||||||||||||||||||||||||||| Sbjct 29957 GTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAA 29997

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
80.5 bits(43)	1e-09()	43/43(100%)	0/43(0%)	Plus/Plus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
80.5 bits(43)	1e-09()	43/43(100%)	0/43(0%)	Plus/Plus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
78.7 bits(42)	5e-09()	42/42(100%)	0/42(0%)	Plus/Plus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
78.7 bits(42)	5e-09()	42/42(100%)	0/42(0%)	Plus/Plus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
76.8 bits(41)	2e-08()	41/41(100%)	0/41(0%)	Plus/Plus

Taxonomy

87 sequences selected
Help

Lineage

Lineage Report
Organism	Blast Name	Score	Number of Hits	Description
Severe acute respiratory syndrome coronavirus 2	viruses	80.5	87	Severe acute respiratory syndrome coronavirus 2 hits

Organism

Organism Report
Description	Score	E value	Accession
Severe acute respiratory syndrome coronavirus 2 [viruses] Next Previous First
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	80.5	1e-09	OV377772
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	80.5	1e-09	OV197539
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	78.7	5e-09	OV197189
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	78.7	5e-09	OV196499
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	76.8	2e-08	OV197600
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	76.8	2e-08	OV197136
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	76.8	2e-08	OV196488
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	76.8	2e-08	OV196298
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	76.8	2e-08	OV196275
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	76.8	2e-08	OV195924
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	76.8	2e-08	OV195900
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	76.8	2e-08	OV195202
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	76.8	2e-08	OV195277
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	76.8	2e-08	OV016109
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	75.0	6e-08	OV197487
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	71.3	8e-07	OV196273
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	69.4	3e-06	OY643770
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	1e-05	OY708354
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	1e-05	OY694257
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	1e-05	OY660716
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY636513
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY624745
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY702405
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY700800
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY630149
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY710775
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY688217
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY688032
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY679187
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY676332
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY695939
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY658535
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY650818
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY654510
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	65.8	4e-05	OV196177
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	1e-04	OY636767
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	1e-04	OY636195
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	1e-04	OY632263
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	1e-04	OY630371
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	1e-04	OY629456
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	1e-04	OY712705
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	1e-04	OY712376
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	1e-04	OY695242
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	1e-04	OY694998
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	1e-04	OY662395
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	1e-04	OY659958
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	1e-04	OY652159
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	1e-04	OY654433
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	63.9	1e-04	OV196492
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY637058
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY635760
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY635503
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY628901
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY629072
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY626210
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY625266
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY698248
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY697624
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY697486
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY703170
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY630060
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY717486
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY711698
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY689820
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY684615
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY680574
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY679872
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY676908
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY672891
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY695365
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY693509
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY691424
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY658031
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY647872
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY642760
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	5e-04	OY642376
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	5e-04	OY271421
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	5e-04	OV196890
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	5e-04	OV196584
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	5e-04	OV196467
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	5e-04	OV196096
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	5e-04	OV196022
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	5e-04	OV196000
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	5e-04	OV195597
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	60.2	0.002	OY677355
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	58.4	0.006	OV197187
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	58.4	0.006	OV195847

Taxonomy

Taxonomy Report
Taxonomy	Number of hits	Number of Organisms	Description
Severe acute respiratory syndrome coronavirus 2	87	1	Severe acute respiratory syndrome coronavirus 2 hits

Filter Results

Sequences producing significant alignments