(cache)NCBI Blast:gb|PQ462667.1|

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Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	100
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Feb 19, 2025 7:30 PM
Number of letters	237,251,919,109
Number of sequences	7,971,121
Entrez query	Includes: Severe acute respiratory syndrome coronavirus 2 (taxid:2697049) Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	41
Effective length of query	108961
Effective length of database	236925103148
Effective search space	25815596164109228
Effective search space used	25815596164109228

Your search is limited to records that include: Severe acute respiratory syndrome coronavirus 2 (taxid:2697049)

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VPBKNYJT013 Search expires on 02-24 21:19 pm

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Title:Nucleotide collection (nt)
Description:The nucleotide collection consists of GenBank+EMBL+DDBJ+PDB+RefSeq sequences, but excludes EST, STS, GSS, WGS, TSA, patent sequences as well as phase 0, 1, and 2 HTGS sequences and sequences longer than 100Mb. The database is non-redundant. Identical sequences have been merged into one entry, while preserving the accession, GI, title and taxonomy information for each entry.
Molecule Type:mixed DNA
Update date:2025/02/22
Number of sequences:112591598

Query ID

PQ462667.1

Description

Escherichia phage HMD-P3, complete genome ...

Molecule type

nucleic acid

Query Length

109002

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99 sequences selected

, Reading indexes 1-5, displaying indexes 1-5, Reading indexes 6-10, displaying indexes 6-10

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq OV197189.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	115	229	0%	4e-19	94.59%	30094	OV197189.1
2Select seq OV196488.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	115	229	0%	4e-19	94.67%	30094	OV196488.1
3Select seq OV195900.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	115	445	0%	4e-19	94.59%	30109	OV195900.1
4Select seq OV195202.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	111	438	0%	5e-18	93.33%	30221	OV195202.1
5Select seq OV016109.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	111	282	0%	5e-18	93.51%	30090	OV016109.1
6Select seq OV197136.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	110	218	0%	2e-17	93.42%	30102	OV197136.1
7Select seq OV196275.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	110	545	0%	2e-17	93.24%	30423	OV196275.1
8Select seq OV195924.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	110	429	0%	2e-17	93.24%	30333	OV195924.1
9Select seq OV196298.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	108	338	0%	7e-17	93.24%	30559	OV196298.1
10Select seq OV197600.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	104	207	0%	9e-16	91.89%	30105	OV197600.1
11Select seq OV197539.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	104	207	0%	9e-16	92.11%	30057	OV197539.1
12Select seq OV196499.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	104	207	0%	9e-16	91.89%	30525	OV196499.1
13Select seq OV195277.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	104	207	0%	9e-16	91.89%	30090	OV195277.1
14Select seq OV196273.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	102	203	0%	3e-15	90.54%	30444	OV196273.1
15Select seq OV197487.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	97.1	192	0%	1e-13	92.75%	30104	OV197487.1
16Select seq OY636767.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	95.3	186	0%	5e-13	93.75%	29479	OY636767.1
17Select seq OV377772.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	89.8	177	0%	2e-11	91.18%	30383	OV377772.1
18Select seq OV197187.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	89.8	239	0%	2e-11	92.19%	30208	OV197187.1
19Select seq OY654433.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	86.1	170	0%	3e-10	93.33%	29830	OY654433.1
20Select seq OY636195.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	84.2	168	0%	1e-09	91.94%	29852	OY636195.1
21Select seq OY712705.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	84.2	168	0%	1e-09	91.67%	29840	OY712705.1
22Select seq OY637058.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	82.4	162	0%	4e-09	91.53%	29853	OY637058.1
23Select seq OY676332.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	82.4	159	0%	4e-09	91.67%	29828	OY676332.1
24Select seq OV196890.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	80.5	161	0%	1e-08	91.53%	30101	OV196890.1
25Select seq OY635760.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	76.8	153	0%	2e-07	92.59%	29868	OY635760.1
26Select seq OY635503.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	76.8	153	0%	2e-07	89.83%	29836	OY635503.1
27Select seq OY672891.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	76.8	153	0%	2e-07	92.59%	29827	OY672891.1
28Select seq OY702405.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	75.0	149	0%	7e-07	89.66%	29864	OY702405.1
29Select seq OY700800.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	75.0	149	0%	7e-07	88.71%	29828	OY700800.1
30Select seq OY650818.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	75.0	149	0%	7e-07	89.83%	29859	OY650818.1
31Select seq OV196492.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	75.0	149	0%	7e-07	91.07%	30243	OV196492.1
32Select seq OV195597.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	75.0	149	0%	7e-07	89.66%	30117	OV195597.1
33Select seq OY697624.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	73.1	146	0%	2e-06	91.07%	29863	OY697624.1
34Select seq OY630149.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	73.1	144	0%	2e-06	92.16%	29449	OY630149.1
35Select seq OV196177.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	73.1	146	0%	2e-06	88.52%	30003	OV196177.1
36Select seq OV196096.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	73.1	146	0%	2e-06	89.47%	29646	OV196096.1
37Select seq OY632263.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	71.3	142	0%	9e-06	90.57%	29431	OY632263.1
38Select seq OY712376.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	71.3	140	0%	9e-06	88.14%	29858	OY712376.1
39Select seq OY688032.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	71.3	142	0%	9e-06	90.57%	29838	OY688032.1
40Select seq OY680574.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	71.3	142	0%	9e-06	90.74%	29863	OY680574.1
41Select seq OY676908.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	69.4	138	0%	3e-05	87.30%	29700	OY676908.1
42Select seq OV196022.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	69.4	263	0%	3e-05	90.74%	30562	OV196022.1
43Select seq OY711698.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	135	0%	1e-04	100.00%	29912	OY711698.1
44Select seq OY708354.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	133	0%	1e-04	90.20%	29843	OY708354.1
45Select seq OY694998.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	135	0%	1e-04	86.67%	29865	OY694998.1
46Select seq OY642376.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	135	0%	1e-04	90.57%	29848	OY642376.1
47Select seq OV196467.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	191	0%	1e-04	91.84%	30053	OV196467.1
48Select seq OY629456.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	131	0%	4e-04	88.89%	29806	OY629456.1
49Select seq OY694257.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	129	0%	4e-04	100.00%	29833	OY694257.1
50Select seq OY662395.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	127	0%	4e-04	97.37%	29831	OY662395.1
51Select seq OY654510.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	129	0%	4e-04	100.00%	29834	OY654510.1
52Select seq OY629072.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	127	0%	0.001	97.37%	29836	OY629072.1
53Select seq OY626210.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	127	0%	0.001	100.00%	29831	OY626210.1
54Select seq OY625266.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	127	0%	0.001	97.37%	29959	OY625266.1
55Select seq OY630371.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	125	0%	0.001	100.00%	29839	OY630371.1
56Select seq OY630060.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	127	0%	0.001	97.37%	29829	OY630060.1
57Select seq OY688217.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	125	0%	0.001	100.00%	29857	OY688217.1
58Select seq OY693509.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	127	0%	0.001	97.37%	29822	OY693509.1
59Select seq OY691424.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	124	0%	0.001	100.00%	29828	OY691424.1
60Select seq OY659958.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	125	0%	0.001	100.00%	29823	OY659958.1
61Select seq OY652159.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	125	0%	0.001	100.00%	29841	OY652159.1
62Select seq OY643770.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	125	0%	0.001	100.00%	29846	OY643770.1
63Select seq OY642760.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	125	0%	0.001	100.00%	29784	OY642760.1
64Select seq OY660716.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	125	0%	0.001	100.00%	29830	OY660716.1
65Select seq OV196584.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	127	0%	0.001	100.00%	30066	OV196584.1
66Select seq OY636513.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	97.30%	29868	OY636513.1
67Select seq OY628901.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	100.00%	29833	OY628901.1
68Select seq OY624745.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	97.30%	29841	OY624745.1
69Select seq OY624021.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.005	88.46%	29840	OY624021.1
70Select seq OY698248.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	100.00%	29820	OY698248.1
71Select seq OY697486.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	100.00%	29835	OY697486.1
72Select seq OY703170.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	100.00%	29848	OY703170.1
73Select seq OY701511.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.005	94.87%	29798	OY701511.1
74Select seq OY633569.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.005	88.46%	29844	OY633569.1
75Select seq OY717486.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	182	0%	0.005	94.87%	29891	OY717486.1
76Select seq OY710775.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	100.00%	29837	OY710775.1
77Select seq OY689820.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	100.00%	29803	OY689820.1
78Select seq OY684615.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	100.00%	29840	OY684615.1
79Select seq OY679872.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	100.00%	29830	OY679872.1
80Select seq OY679187.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	100.00%	29846	OY679187.1
81Select seq OY677355.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.005	97.22%	29821	OY677355.1
82Select seq OY695939.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	97.30%	29845	OY695939.1
83Select seq OY695365.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	100.00%	29803	OY695365.1
84Select seq OY695242.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	100.00%	29846	OY695242.1
85Select seq OY658031.2	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	100.00%	29825	OY658031.2
86Select seq OY658535.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	97.30%	29842	OY658535.1
87Select seq OY655439.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.005	97.22%	29858	OY655439.1
88Select seq OY647872.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	100.00%	29836	OY647872.1
89Select seq OY271421.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	100.00%	29815	OY271421.1
90Select seq OV196626.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	97.22%	30095	OV196626.1
91Select seq OV196000.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	124	0%	0.005	100.00%	30106	OV196000.1
92Select seq OV264044.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.005	100.00%	30466	OV264044.1
93Select seq OY703982.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	60.2	60.2	0%	0.019	97.14%	29866	OY703982.1
94Select seq OY702104.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	60.2	60.2	0%	0.019	92.86%	29850	OY702104.1
95Select seq OY629453.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	60.2	60.2	0%	0.019	97.14%	29842	OY629453.1
96Select seq OY714119.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	60.2	60.2	0%	0.019	94.87%	29868	OY714119.1
97Select seq OY711604.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	60.2	60.2	0%	0.019	94.74%	29844	OY711604.1
98Select seq OY706291.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	60.2	60.2	0%	0.019	97.14%	29724	OY706291.1
99Select seq OY682303.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	60.2	60.2	0%	0.019	94.87%	29802	OY682303.1

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  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
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Distribution of the top 204 Blast Hits on 99 subject sequences

Query

1
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100000
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  Alignment view: Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
  
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Loading alignment... for sequences gi|2165836885,gi|2165835422,gi|2165834194,gi|2165832904,gi|2155043488 Reading indexes 1-5

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Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV197189.1Length: 30094Number of Matches: 2

Related Information

Range 1: 29911 to 29984GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

115 bits(62) 4e-19() 70/74(95%) 0/74(0%) Plus/Minus

Features:

Query 7532 TTTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGA 7591 ||||||||||||||||||||||||||||||||| || | |||||||||||||||||||| Sbjct 29984 TTTTAATGATACGGCGACCACCGAGATCTACACTGGAAGCAACACTCTTTCCCTACACGA 29925 Query 7592 CGCTCTTCCGATCT 7605 |||||||||||||| Sbjct 29924 CGCTCTTCCGATCT 29911

Range 2: 29911 to 29983GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score Expect Identities Gaps Strand Frame

113 bits(61) 1e-18() 69/73(95%) 0/73(0%) Plus/Minus

Features:

Query 81391 TTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGAC 81450 |||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| Sbjct 29983 TTTAATGATACGGCGACCACCGAGATCTACACTGGAAGCAACACTCTTTCCCTACACGAC 29924 Query 81451 GCTCTTCCGATCT 81463 ||||||||||||| Sbjct 29923 GCTCTTCCGATCT 29911

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Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV196488.1Length: 30094Number of Matches: 2

Related Information

Range 1: 29914 to 29987GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

115 bits(62) 4e-19() 71/75(95%) 2/75(2%) Plus/Minus

Features:

Query 7532 TTTTAATGATACGGCGACCACCGAGATCTACACCTGAGGA-AACACTCTTTCCCTACACG 7590 ||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| Sbjct 29987 TTTTAATGATACGGCGACCACCGAGATCTACAC-GGAAGAGAACACTCTTTCCCTACACG 29929 Query 7591 ACGCTCTTCCGATCT 7605 ||||||||||||||| Sbjct 29928 ACGCTCTTCCGATCT 29914

Range 2: 29914 to 29986GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score Expect Identities Gaps Strand Frame

113 bits(61) 1e-18() 70/74(95%) 2/74(2%) Plus/Minus

Features:

Query 81391 TTTAATGATACGGCGACCACCGAGATCTACACCTGAGGA-AACACTCTTTCCCTACACGA 81449 |||||||||||||||||||||||||||||||| || || |||||||||||||||||||| Sbjct 29986 TTTAATGATACGGCGACCACCGAGATCTACAC-GGAAGAGAACACTCTTTCCCTACACGA 29928 Query 81450 CGCTCTTCCGATCT 81463 |||||||||||||| Sbjct 29927 CGCTCTTCCGATCT 29914

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Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV195900.1Length: 30109Number of Matches: 5

Related Information

Range 1: 29992 to 30065GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

115 bits(62) 4e-19() 70/74(95%) 0/74(0%) Plus/Minus

Features:

Query 7532 TTTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGA 7591 ||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| Sbjct 30065 TTTTAATGATACGGCGACCACCGAGATCTACACGAGAGTACACACTCTTTCCCTACACGA 30006 Query 7592 CGCTCTTCCGATCT 7605 |||||||||||||| Sbjct 30005 CGCTCTTCCGATCT 29992

Range 2: 29992 to 30064GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score Expect Identities Gaps Strand Frame

113 bits(61) 1e-18() 69/73(95%) 0/73(0%) Plus/Minus

Features:

Query 81391 TTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGAC 81450 |||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| Sbjct 30064 TTTAATGATACGGCGACCACCGAGATCTACACGAGAGTACACACTCTTTCCCTACACGAC 30005 Query 81451 GCTCTTCCGATCT 81463 ||||||||||||| Sbjct 30004 GCTCTTCCGATCT 29992

Range 3: 67 to 121GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score Expect Identities Gaps Strand Frame

76.8 bits(41) 2e-07() 50/55(91%) 0/55(0%) Plus/Plus

Features:

Query 7548 ACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGACGCTCTTCCGA 7602 || |||||||||||||| ||| | |||||||||||||||||||||||||||||| Sbjct 67 ACMACCGAGATCTACACGAGAGTACACACTCTTTCCCTACACGACGCTCTTCCGA 121

Range 4: 67 to 121GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #4
Score Expect Identities Gaps Strand Frame

76.8 bits(41) 2e-07() 50/55(91%) 0/55(0%) Plus/Plus

Features:

Query 81406 ACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGACGCTCTTCCGA 81460 || |||||||||||||| ||| | |||||||||||||||||||||||||||||| Sbjct 67 ACMACCGAGATCTACACGAGAGTACACACTCTTTCCCTACACGACGCTCTTCCGA 121

Range 5: 148 to 195GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #5
Score Expect Identities Gaps Strand Frame

62.1 bits(33) 0.005() 44/49(90%) 2/49(4%) Plus/Minus

Features:

Query 108935 AGAACGGAAGAGCACACGTCTGAACTCCAGTCACAGGACAG-ACTCTCG 108982 ||| |||||||||||||||||||||||||||||| ||| || | ||||| Sbjct 195 AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTGGA-AGCAATCTCG 148

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Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV195202.1Length: 30221Number of Matches: 4

Related Information

Range 1: 87 to 161GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

111 bits(60) 5e-18() 70/75(93%) 0/75(0%) Plus/Plus

Features:

Query 7532 TTTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGA 7591 |||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| Sbjct 87 TTTTAATGATACGGCGACCACCGAGATCTACACCAGTGCTTACACTCTTTCCCTACACGA 146 Query 7592 CGCTCTTCCGATCTT 7606 ||||||||||||||| Sbjct 147 CGCTCTTCCGATCTT 161

Range 2: 30032 to 30105GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score Expect Identities Gaps Strand Frame

110 bits(59) 2e-17() 69/74(93%) 0/74(0%) Plus/Minus

Features:

Query 7532 TTTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGA 7591 |||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| Sbjct 30105 TTTTAATGATACGGCGACCACCGAGATCTACACCAGTGCTTACACTCTTTCCCTACACGA 30046 Query 7592 CGCTCTTCCGATCT 7605 |||||||||||||| Sbjct 30045 CGCTCTTCCGATCT 30032

Range 3: 88 to 160GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score Expect Identities Gaps Strand Frame

108 bits(58) 7e-17() 68/73(93%) 0/73(0%) Plus/Plus

Features:

Query 81391 TTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGAC 81450 ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| Sbjct 88 TTTAATGATACGGCGACCACCGAGATCTACACCAGTGCTTACACTCTTTCCCTACACGAC 147 Query 81451 GCTCTTCCGATCT 81463 ||||||||||||| Sbjct 148 GCTCTTCCGATCT 160

Range 4: 30032 to 30104GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #4
Score Expect Identities Gaps Strand Frame

108 bits(58) 7e-17() 68/73(93%) 0/73(0%) Plus/Minus

Features:

Query 81391 TTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGAC 81450 ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| Sbjct 30104 TTTAATGATACGGCGACCACCGAGATCTACACCAGTGCTTACACTCTTTCCCTACACGAC 30045 Query 81451 GCTCTTCCGATCT 81463 ||||||||||||| Sbjct 30044 GCTCTTCCGATCT 30032

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Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV016109.1Length: 30090Number of Matches: 3

Related Information

Range 1: 29991 to 30066GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

111 bits(60) 5e-18() 72/77(94%) 4/77(5%) Plus/Minus

Features:

Query 7532 TTTTAATGATACGGCGACCACCGAGATCTACACCT--G-AGGAAACACTCTTTCCCTACA 7588 ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| Sbjct 30066 TTTTAATGATACGGCGACCACCGAGATCTACACCTCAGTAGG-CACACTCTTTCCCTACA 30008 Query 7589 CGACGCTCTTCCGATCT 7605 ||||||||||||||||| Sbjct 30007 CGACGCTCTTCCGATCT 29991

Range 2: 29991 to 30065GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score Expect Identities Gaps Strand Frame

110 bits(59) 2e-17() 71/76(93%) 4/76(5%) Plus/Minus

Features:

Query 81391 TTTAATGATACGGCGACCACCGAGATCTACACCT--G-AGGAAACACTCTTTCCCTACAC 81447 |||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| Sbjct 30065 TTTAATGATACGGCGACCACCGAGATCTACACCTCAGTAGG-CACACTCTTTCCCTACAC 30007 Query 81448 GACGCTCTTCCGATCT 81463 |||||||||||||||| Sbjct 30006 GACGCTCTTCCGATCT 29991

Range 3: 29904 to 29942GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score Expect Identities Gaps Strand Frame

60.2 bits(32) 0.019() 37/39(95%) 1/39(2%) Plus/Minus

Features:

Query 108934 AAGAACGGAAGAGCACACGTCTGAACTCCAGTCAC-AGG 108971 |||| |||||||||||||||||||||||||||||| ||| Sbjct 29942 AAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGG 29904
Loading alignment... for sequences gi|2165836832,gi|2165835007,gi|2165834218,gi|2165835030,gi|2165837707 Reading indexes 6-10

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Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV197136.1Length: 30102Number of Matches: 2

Related Information

Range 1: 29913 to 29986GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

110 bits(59) 2e-17() 71/76(93%) 4/76(5%) Plus/Minus

Features:

Query 7532 TTTTAATGATACGGCGACCACCGAGATCTACACCTGAGGA--AACACTCTTTCCCTACAC 7589 |||||||||||||||||||||||||||||||||| | | | |||||||||||||||||| Sbjct 29986 TTTTAATGATACGGCGACCACCGAGATCTACACC-G-GCATTAACACTCTTTCCCTACAC 29929 Query 7590 GACGCTCTTCCGATCT 7605 |||||||||||||||| Sbjct 29928 GACGCTCTTCCGATCT 29913

Range 2: 29913 to 29985GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score Expect Identities Gaps Strand Frame

108 bits(58) 7e-17() 70/75(93%) 4/75(5%) Plus/Minus

Features:

Query 81391 TTTAATGATACGGCGACCACCGAGATCTACACCTGAGGA--AACACTCTTTCCCTACACG 81448 ||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||| Sbjct 29985 TTTAATGATACGGCGACCACCGAGATCTACACC-G-GCATTAACACTCTTTCCCTACACG 29928 Query 81449 ACGCTCTTCCGATCT 81463 ||||||||||||||| Sbjct 29927 ACGCTCTTCCGATCT 29913

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Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV196275.1Length: 30423Number of Matches: 6

Related Information

Range 1: 29993 to 30066GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

110 bits(59) 2e-17() 69/74(93%) 0/74(0%) Plus/Minus

Features:

Query 7532 TTTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGA 7591 |||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 30066 TTTTAATGATACGGCGACCACCGAGATCTACACCAGGTTCAACACTCTTTCCCTACACGA 30007 Query 7592 CGCTCTTCCGATCT 7605 |||||||||||||| Sbjct 30006 CGCTCTTCCGATCT 29993

Range 2: 29993 to 30065GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score Expect Identities Gaps Strand Frame

108 bits(58) 7e-17() 68/73(93%) 0/73(0%) Plus/Minus

Features:

Query 81391 TTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGAC 81450 ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 30065 TTTAATGATACGGCGACCACCGAGATCTACACCAGGTTCAACACTCTTTCCCTACACGAC 30006 Query 81451 GCTCTTCCGATCT 81463 ||||||||||||| Sbjct 30005 GCTCTTCCGATCT 29993

Range 3: 48 to 118GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score Expect Identities Gaps Strand Frame

104 bits(56) 9e-16() 66/71(93%) 0/71(0%) Plus/Plus

Features:

Query 7532 TTTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGA 7591 |||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 48 TTTTAATGATACGGCGACCACCGAGATCTACACCAGGTTCAACACTCTTTCCCTACACGA 107 Query 7592 CGCTCTTCCGA 7602 ||||||||||| Sbjct 108 CGCTCTTCCGA 118

Range 4: 49 to 118GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #4
Score Expect Identities Gaps Strand Frame

102 bits(55) 3e-15() 65/70(93%) 0/70(0%) Plus/Plus

Features:

Query 81391 TTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGAC 81450 ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 49 TTTAATGATACGGCGACCACCGAGATCTACACCAGGTTCAACACTCTTTCCCTACACGAC 108 Query 81451 GCTCTTCCGA 81460 |||||||||| Sbjct 109 GCTCTTCCGA 118

Range 5: 162 to 196GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #5
Score Expect Identities Gaps Strand Frame

60.2 bits(32) 0.019() 34/35(97%) 0/35(0%) Plus/Minus

Features:

Query 108935 AGAACGGAAGAGCACACGTCTGAACTCCAGTCACA 108969 ||| ||||||||||||||||||||||||||||||| Sbjct 196 AGATCGGAAGAGCACACGTCTGAACTCCAGTCACA 162

Range 6: 30236 to 30270GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #6
Score Expect Identities Gaps Strand Frame

60.2 bits(32) 0.019() 34/35(97%) 0/35(0%) Plus/Minus

Features:

Query 108935 AGAACGGAAGAGCACACGTCTGAACTCCAGTCACA 108969 ||| ||||||||||||||||||||||||||||||| Sbjct 30270 AGATCGGAAGAGCACACGTCTGAACTCCAGTCACA 30236

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Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV195924.1Length: 30333Number of Matches: 4

Related Information

Range 1: 56 to 129GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

110 bits(59) 2e-17() 69/74(93%) 0/74(0%) Plus/Plus

Features:

Query 7532 TTTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGA 7591 |||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 56 TTTTAATGATACGGCGACCACCGAGATCTACACCAATGCGAACACTCTTTCCCTACACGA 115 Query 7592 CGCTCTTCCGATCT 7605 |||||||||||||| Sbjct 116 CGCTCTTCCGATCT 129

Range 2: 57 to 129GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score Expect Identities Gaps Strand Frame

108 bits(58) 7e-17() 68/73(93%) 0/73(0%) Plus/Plus

Features:

Query 81391 TTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGAC 81450 ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 57 TTTAATGATACGGCGACCACCGAGATCTACACCAATGCGAACACTCTTTCCCTACACGAC 116 Query 81451 GCTCTTCCGATCT 81463 ||||||||||||| Sbjct 117 GCTCTTCCGATCT 129

Range 3: 30146 to 30219GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score Expect Identities Gaps Strand Frame

106 bits(57) 2e-16() 68/74(92%) 0/74(0%) Plus/Minus

Features:

Query 7532 TTTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGA 7591 |||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 30219 TTTTWATGATACGGCGACCACCGAGATCTACACCAATGCGAACACTCTTTCCCTACACGA 30160 Query 7592 CGCTCTTCCGATCT 7605 |||||||||||||| Sbjct 30159 CGCTCTTCCGATCT 30146

Range 4: 30146 to 30218GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #4
Score Expect Identities Gaps Strand Frame

104 bits(56) 9e-16() 67/73(92%) 0/73(0%) Plus/Minus

Features:

Query 81391 TTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGAC 81450 ||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 30218 TTTWATGATACGGCGACCACCGAGATCTACACCAATGCGAACACTCTTTCCCTACACGAC 30159 Query 81451 GCTCTTCCGATCT 81463 ||||||||||||| Sbjct 30158 GCTCTTCCGATCT 30146

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Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV196298.1Length: 30559Number of Matches: 4

Related Information

Range 1: 78 to 150GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

108 bits(58) 7e-17() 69/74(93%) 2/74(2%) Plus/Plus

Features:

Query 7532 TTTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAA-ACACTCTTTCCCTACACG 7590 |||||||||||||||||||||||||||||||||| | || |||||||||||||||||| Sbjct 78 TTTTAATGATACGGCGACCACCGAGATCTACACC-ACGCAATACACTCTTTCCCTACACG 136 Query 7591 ACGCTCTTCCGATC 7604 |||||||||||||| Sbjct 137 ACGCTCTTCCGATC 150

Range 2: 79 to 150GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score Expect Identities Gaps Strand Frame

106 bits(57) 2e-16() 68/73(93%) 2/73(2%) Plus/Plus

Features:

Query 81391 TTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAA-ACACTCTTTCCCTACACGA 81449 ||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| Sbjct 79 TTTAATGATACGGCGACCACCGAGATCTACACC-ACGCAATACACTCTTTCCCTACACGA 137 Query 81450 CGCTCTTCCGATC 81462 ||||||||||||| Sbjct 138 CGCTCTTCCGATC 150

Range 3: 30161 to 30193GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score Expect Identities Gaps Strand Frame

62.1 bits(33) 0.005() 33/33(100%) 0/33(0%) Plus/Minus

Features:

Query 81431 ACACTCTTTCCCTACACGACGCTCTTCCGATCT 81463 ||||||||||||||||||||||||||||||||| Sbjct 30193 ACACTCTTTCCCTACACGACGCTCTTCCGATCT 30161

Range 4: 30161 to 30193GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #4
Score Expect Identities Gaps Strand Frame

62.1 bits(33) 0.005() 33/33(100%) 0/33(0%) Plus/Minus

Features:

Query 7573 ACACTCTTTCCCTACACGACGCTCTTCCGATCT 7605 ||||||||||||||||||||||||||||||||| Sbjct 30193 ACACTCTTTCCCTACACGACGCTCTTCCGATCT 30161

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Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV197600.1Length: 30105Number of Matches: 2

Related Information

Range 1: 29916 to 29989GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

104 bits(56) 9e-16() 68/74(92%) 0/74(0%) Plus/Minus

Features:

Query 7532 TTTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGA 7591 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 29989 TTTTAATGATACGGCGACCACCGAGATCTACACCAACTCCAACACTCTTTCCCTACACGA 29930 Query 7592 CGCTCTTCCGATCT 7605 |||||||||||||| Sbjct 29929 CGCTCTTCCGATCT 29916

Range 2: 29916 to 29988GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score Expect Identities Gaps Strand Frame

102 bits(55) 3e-15() 67/73(92%) 0/73(0%) Plus/Minus

Features:

Query 81391 TTTAATGATACGGCGACCACCGAGATCTACACCTGAGGAAACACTCTTTCCCTACACGAC 81450 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 29988 TTTAATGATACGGCGACCACCGAGATCTACACCAACTCCAACACTCTTTCCCTACACGAC 29929 Query 81451 GCTCTTCCGATCT 81463 ||||||||||||| Sbjct 29928 GCTCTTCCGATCT 29916

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
115 bits(62)	4e-19()	70/74(95%)	0/74(0%)	Plus/Minus

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
113 bits(61)	1e-18()	69/73(95%)	0/73(0%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
115 bits(62)	4e-19()	71/75(95%)	2/75(2%)	Plus/Minus

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
113 bits(61)	1e-18()	70/74(95%)	2/74(2%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
115 bits(62)	4e-19()	70/74(95%)	0/74(0%)	Plus/Minus

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
113 bits(61)	1e-18()	69/73(95%)	0/73(0%)	Plus/Minus

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
76.8 bits(41)	2e-07()	50/55(91%)	0/55(0%)	Plus/Plus

Alignment statistics for match #4
Score	Expect	Identities	Gaps	Strand	Frame
76.8 bits(41)	2e-07()	50/55(91%)	0/55(0%)	Plus/Plus

Alignment statistics for match #5
Score	Expect	Identities	Gaps	Strand	Frame
62.1 bits(33)	0.005()	44/49(90%)	2/49(4%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
111 bits(60)	5e-18()	70/75(93%)	0/75(0%)	Plus/Plus

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
110 bits(59)	2e-17()	69/74(93%)	0/74(0%)	Plus/Minus

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
108 bits(58)	7e-17()	68/73(93%)	0/73(0%)	Plus/Plus

Alignment statistics for match #4
Score	Expect	Identities	Gaps	Strand	Frame
108 bits(58)	7e-17()	68/73(93%)	0/73(0%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
111 bits(60)	5e-18()	72/77(94%)	4/77(5%)	Plus/Minus

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
110 bits(59)	2e-17()	71/76(93%)	4/76(5%)	Plus/Minus

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
60.2 bits(32)	0.019()	37/39(95%)	1/39(2%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
110 bits(59)	2e-17()	71/76(93%)	4/76(5%)	Plus/Minus

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
108 bits(58)	7e-17()	70/75(93%)	4/75(5%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
110 bits(59)	2e-17()	69/74(93%)	0/74(0%)	Plus/Minus

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
108 bits(58)	7e-17()	68/73(93%)	0/73(0%)	Plus/Minus

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
104 bits(56)	9e-16()	66/71(93%)	0/71(0%)	Plus/Plus

Alignment statistics for match #4
Score	Expect	Identities	Gaps	Strand	Frame
102 bits(55)	3e-15()	65/70(93%)	0/70(0%)	Plus/Plus

Alignment statistics for match #5
Score	Expect	Identities	Gaps	Strand	Frame
60.2 bits(32)	0.019()	34/35(97%)	0/35(0%)	Plus/Minus

Alignment statistics for match #6
Score	Expect	Identities	Gaps	Strand	Frame
60.2 bits(32)	0.019()	34/35(97%)	0/35(0%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
110 bits(59)	2e-17()	69/74(93%)	0/74(0%)	Plus/Plus

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
108 bits(58)	7e-17()	68/73(93%)	0/73(0%)	Plus/Plus

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
106 bits(57)	2e-16()	68/74(92%)	0/74(0%)	Plus/Minus

Alignment statistics for match #4
Score	Expect	Identities	Gaps	Strand	Frame
104 bits(56)	9e-16()	67/73(92%)	0/73(0%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
108 bits(58)	7e-17()	69/74(93%)	2/74(2%)	Plus/Plus

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
106 bits(57)	2e-16()	68/73(93%)	2/73(2%)	Plus/Plus

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
62.1 bits(33)	0.005()	33/33(100%)	0/33(0%)	Plus/Minus

Alignment statistics for match #4
Score	Expect	Identities	Gaps	Strand	Frame
62.1 bits(33)	0.005()	33/33(100%)	0/33(0%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
104 bits(56)	9e-16()	68/74(92%)	0/74(0%)	Plus/Minus

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
102 bits(55)	3e-15()	67/73(92%)	0/73(0%)	Plus/Minus

Taxonomy

99 sequences selected
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Lineage

Lineage Report
Organism	Blast Name	Score	Number of Hits	Description
Severe acute respiratory syndrome coronavirus 2	viruses	115	99	Severe acute respiratory syndrome coronavirus 2 hits

Organism

Organism Report
Description	Score	E value	Accession
Severe acute respiratory syndrome coronavirus 2 [viruses] Next Previous First
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	115	4e-19	OV197189
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	115	4e-19	OV196488
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	115	4e-19	OV195900
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	111	5e-18	OV195202
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	111	5e-18	OV016109
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	110	2e-17	OV197136
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	110	2e-17	OV196275
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	110	2e-17	OV195924
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	108	7e-17	OV196298
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	104	9e-16	OV197600
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	104	9e-16	OV197539
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	104	9e-16	OV196499
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	104	9e-16	OV195277
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	102	3e-15	OV196273
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	97.1	1e-13	OV197487
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	95.3	5e-13	OY636767
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	89.8	2e-11	OV377772
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	89.8	2e-11	OV197187
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	86.1	3e-10	OY654433
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	84.2	1e-09	OY636195
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	84.2	1e-09	OY712705
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	82.4	4e-09	OY637058
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	82.4	4e-09	OY676332
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	80.5	1e-08	OV196890
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	76.8	2e-07	OY635760
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	76.8	2e-07	OY635503
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	76.8	2e-07	OY672891
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	75.0	7e-07	OY702405
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	75.0	7e-07	OY700800
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	75.0	7e-07	OY650818
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	75.0	7e-07	OV196492
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	75.0	7e-07	OV195597
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	73.1	2e-06	OY697624
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	73.1	2e-06	OY630149
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	73.1	2e-06	OV196177
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	73.1	2e-06	OV196096
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	71.3	9e-06	OY632263
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	71.3	9e-06	OY712376
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	71.3	9e-06	OY688032
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	71.3	9e-06	OY680574
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	69.4	3e-05	OY676908
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	69.4	3e-05	OV196022
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	1e-04	OY711698
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	1e-04	OY708354
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	1e-04	OY694998
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	1e-04	OY642376
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	67.6	1e-04	OV196467
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-04	OY629456
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-04	OY694257
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-04	OY662395
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-04	OY654510
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.001	OY629072
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.001	OY626210
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.001	OY625266
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.001	OY630371
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.001	OY630060
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.001	OY688217
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.001	OY693509
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.001	OY691424
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.001	OY659958
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.001	OY652159
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.001	OY643770
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.001	OY642760
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.001	OY660716
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	63.9	0.001	OV196584
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY636513
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY628901
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY624745
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY624021
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY698248
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY697486
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY703170
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY701511
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY633569
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY717486
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY710775
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY689820
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY684615
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY679872
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY679187
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY677355
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY695939
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY695365
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY695242
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY658031
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY658535
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY655439
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.005	OY647872
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	0.005	OY271421
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	0.005	OV196626
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	0.005	OV196000
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	0.005	OV264044
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	60.2	0.019	OY703982
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	60.2	0.019	OY702104
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	60.2	0.019	OY629453
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	60.2	0.019	OY714119
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	60.2	0.019	OY711604
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	60.2	0.019	OY706291
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	60.2	0.019	OY682303

Taxonomy

Taxonomy Report
Taxonomy	Number of hits	Number of Organisms	Description
Severe acute respiratory syndrome coronavirus 2	99	1	Severe acute respiratory syndrome coronavirus 2 hits

Filter Results

Sequences producing significant alignments