(cache)NCBI Blast:gb|MT364888.1|

Save Search

Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	250
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Feb 19, 2025 7:30 PM
Number of letters	237,251,919,109
Number of sequences	7,971,121
Entrez query	Includes: Severe acute respiratory syndrome coronavirus 2 (taxid:2697049) Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33452	1.28
K	0.62152	0.46
H	1.12585	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	41
Effective length of query	154654
Effective length of database	236925103148
Effective search space	36641414902250792
Effective search space used	36641414902250792

Your search is limited to records that include: Severe acute respiratory syndrome coronavirus 2 (taxid:2697049)

Job Title

gb|MT364888.1| ...

RID

VP1PCJJN013 Search expires on 02-24 18:30 pm

Download All

Results for

Program

BLASTN

Citation

Database

See details

Title:Nucleotide collection (nt)
Description:The nucleotide collection consists of GenBank+EMBL+DDBJ+PDB+RefSeq sequences, but excludes EST, STS, GSS, WGS, TSA, patent sequences as well as phase 0, 1, and 2 HTGS sequences and sequences longer than 100Mb. The database is non-redundant. Identical sequences have been merged into one entry, while preserving the accession, GI, title and taxonomy information for each entry.
Molecule Type:mixed DNA
Update date:2025/02/22
Number of sequences:112591598

Query ID

MT364888.1

Description

Human alphaherpesvirus 2, partial genome ...

Molecule type

nucleic acid

Query Length

154695

Other reports

Distance tree of results MSA viewer

Filter Results

Descriptions

select all
86 sequences selected

, Reading indexes 1-5, displaying indexes 1-5

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq OV196298.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	122	185	0%	3e-21	94.94%	30559	OV196298.1
2Select seq OV197189.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	119	119	0%	4e-20	93.83%	30094	OV197189.1
3Select seq OV197136.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	119	119	0%	4e-20	93.67%	30102	OV197136.1
4Select seq OV196488.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	119	119	0%	4e-20	93.67%	30094	OV196488.1
5Select seq OV196275.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	119	229	0%	4e-20	93.75%	30423	OV196275.1
6Select seq OV195924.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	119	234	0%	4e-20	93.83%	30333	OV195924.1
7Select seq OV195900.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	119	190	0%	4e-20	93.67%	30109	OV195900.1
8Select seq OV197539.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	113	113	0%	2e-18	92.50%	30057	OV197539.1
9Select seq OV196499.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	113	113	0%	2e-18	92.41%	30525	OV196499.1
10Select seq OV195202.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	113	227	0%	2e-18	92.59%	30221	OV195202.1
11Select seq OV195277.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	113	113	0%	2e-18	92.50%	30090	OV195277.1
12Select seq OV016109.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	110	110	0%	3e-17	91.36%	30090	OV016109.1
13Select seq OV197600.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	108	108	0%	1e-16	91.25%	30105	OV197600.1
14Select seq OV197487.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	106	106	0%	3e-16	93.15%	30104	OV197487.1
15Select seq OV196273.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	106	106	0%	3e-16	90.00%	30444	OV196273.1
16Select seq OV197187.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	95.3	95.3	0%	8e-13	86.25%	30208	OV197187.1
17Select seq OV377772.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	93.5	93.5	0%	3e-12	90.28%	30383	OV377772.1
18Select seq OY637058.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	91.6	91.6	0%	1e-11	94.92%	29853	OY637058.1
19Select seq OU471411.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	89.8	89.8	0%	4e-11	87.18%	30104	OU471411.1
20Select seq OY636195.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	86.1	86.1	0%	5e-10	91.94%	29852	OY636195.1
21Select seq OV196890.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	86.1	86.1	0%	5e-10	93.10%	30101	OV196890.1
22Select seq OY635503.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	84.2	84.2	0%	2e-09	91.67%	29836	OY635503.1
23Select seq OY654433.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	84.2	84.2	0%	2e-09	93.10%	29830	OY654433.1
24Select seq OV196177.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	84.2	84.2	0%	2e-09	84.81%	30003	OV196177.1
25Select seq OY636767.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	82.4	82.4	0%	6e-09	89.23%	29479	OY636767.1
26Select seq OY702405.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	82.4	82.4	0%	6e-09	91.53%	29864	OY702405.1
27Select seq OY650818.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	82.4	82.4	0%	6e-09	91.67%	29859	OY650818.1
28Select seq OY712705.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	80.5	80.5	0%	2e-08	90.16%	29840	OY712705.1
29Select seq OV195597.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	80.5	80.5	0%	2e-08	91.38%	30117	OV195597.1
30Select seq OY632263.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	78.7	78.7	0%	8e-08	92.59%	29431	OY632263.1
31Select seq OY697486.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	78.7	78.7	0%	8e-08	92.59%	29835	OY697486.1
32Select seq OY629456.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	78.7	78.7	0%	8e-08	92.59%	29806	OY629456.1
33Select seq OY676908.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	76.8	76.8	0%	3e-07	91.23%	29700	OY676908.1
34Select seq OY700800.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	75.0	75.0	0%	1e-06	89.66%	29828	OY700800.1
35Select seq OY712376.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	75.0	75.0	0%	1e-06	89.83%	29858	OY712376.1
36Select seq OY694998.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	75.0	75.0	0%	1e-06	88.71%	29865	OY694998.1
37Select seq OY635760.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	73.1	73.1	0%	4e-06	90.91%	29868	OY635760.1
38Select seq OY672891.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	73.1	73.1	0%	4e-06	90.91%	29827	OY672891.1
39Select seq OV196096.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	73.1	73.1	0%	4e-06	89.66%	29646	OV196096.1
40Select seq OY698248.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	69.4	69.4	0%	5e-05	100.00%	29820	OY698248.1
41Select seq OY652159.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	69.4	69.4	0%	5e-05	91.84%	29841	OY652159.1
42Select seq OV196492.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	69.4	69.4	0%	5e-05	89.29%	30243	OV196492.1
43Select seq OV196022.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	69.4	129	0%	5e-05	90.74%	30562	OV196022.1
44Select seq OY629072.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	0%	2e-04	97.44%	29836	OY629072.1
45Select seq OY697624.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	0%	2e-04	89.09%	29863	OY697624.1
46Select seq OY630371.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	0%	2e-04	91.67%	29839	OY630371.1
47Select seq OY688032.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	0%	2e-04	89.29%	29838	OY688032.1
48Select seq OY680574.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	0%	2e-04	89.29%	29863	OY680574.1
49Select seq OY271421.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	0%	2e-04	100.00%	29815	OY271421.1
50Select seq OY628901.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	6e-04	100.00%	29833	OY628901.1
51Select seq OY679872.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	6e-04	100.00%	29830	OY679872.1
52Select seq OY676332.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	6e-04	87.72%	29828	OY676332.1
53Select seq OY647872.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	6e-04	100.00%	29836	OY647872.1
54Select seq OY703170.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	0.002	95.12%	29848	OY703170.1
55Select seq OY689820.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	0.002	100.00%	29803	OY689820.1
56Select seq OY684615.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	0.002	100.00%	29840	OY684615.1
57Select seq OY695939.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	0.002	97.37%	29845	OY695939.1
58Select seq OY695365.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	0.002	100.00%	29803	OY695365.1
59Select seq OY695242.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	0.002	100.00%	29846	OY695242.1
60Select seq OY658535.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	0.002	97.30%	29842	OY658535.1
61Select seq OV196000.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	0.002	100.00%	30106	OV196000.1
62Select seq OY636513.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29868	OY636513.1
63Select seq OY626210.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29831	OY626210.1
64Select seq OY625266.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29959	OY625266.1
65Select seq OY624745.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29841	OY624745.1
66Select seq OY630149.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29449	OY630149.1
67Select seq OY630060.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29829	OY630060.1
68Select seq OY711698.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	97.30%	29912	OY711698.1
69Select seq OY710775.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29837	OY710775.1
70Select seq OY708354.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29843	OY708354.1
71Select seq OY694257.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29833	OY694257.1
72Select seq OY688217.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29857	OY688217.1
73Select seq OY679187.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29846	OY679187.1
74Select seq OY693509.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29822	OY693509.1
75Select seq OY658031.2	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29825	OY658031.2
76Select seq OY662395.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	97.22%	29831	OY662395.1
77Select seq OY659958.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29823	OY659958.1
78Select seq OY643770.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29846	OY643770.1
79Select seq OY642760.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29784	OY642760.1
80Select seq OY642376.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29848	OY642376.1
81Select seq OY660716.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29830	OY660716.1
82Select seq OY654510.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	29834	OY654510.1
83Select seq OV196584.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	30066	OV196584.1
84Select seq OV196467.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	0.008	100.00%	30053	OV196467.1
85Select seq OY717486.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	60.2	60.2	0%	0.027	100.00%	29891	OY717486.1
86Select seq OY691424.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	60.2	60.2	0%	0.027	100.00%	29828	OY691424.1

- hover to see the title
- click to show alignments
- Show Conserved Domains
- Alignment Scores
- < 40
- 40 - 50
- 50 - 80
- 80 - 200
- >= 200
- Help
  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
- 86 sequences selected
- Help
Distribution of the top 92 Blast Hits on 86 subject sequences

Query

1
30000
60000
90000
120000
150000
- Alignment view
- CDS feature
- Line length:
- Help
  Alignment view: Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
  
  CDS feature: Show annotated coding region and translation. more...
  
  Line length: Number of letters to show on one line in an alignment.
- 86 sequences selected
- Help
Loading alignment... for sequences gi|2165835030,gi|2165836885,gi|2165836832,gi|2165835422,gi|2165835007 Reading indexes 1-5

Download GenBank Graphics
Sort by:
Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV196298.1Length: 30559Number of Matches: 2

Related Information

Range 1: 73 to 150GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

122 bits(66) 3e-21() 75/79(95%) 2/79(2%) Plus/Plus

Features:

Query 1 tttttttttAATGATACGGCGACCACCGAGATCTACAC-AGGCGAAGACACTCTTTCCCT 59 |||||||||||||||||||||||||||||||||||||| | || || ||||||||||||| Sbjct 73 TTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCACGC-AATACACTCTTTCCCT 131 Query 60 ACACGACGCTCTTCCGATC 78 ||||||||||||||||||| Sbjct 132 ACACGACGCTCTTCCGATC 150

Range 2: 30161 to 30193GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score Expect Identities Gaps Strand Frame

62.1 bits(33) 0.008() 33/33(100%) 0/33(0%) Plus/Minus

Features:

Query 47 ACACTCTTTCCCTACACGACGCTCTTCCGATCT 79 ||||||||||||||||||||||||||||||||| Sbjct 30193 ACACTCTTTCCCTACACGACGCTCTTCCGATCT 30161

Download GenBank Graphics Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV197189.1Length: 30094Number of Matches: 1

Related Information

Range 1: 29911 to 29989GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

119 bits(64) 4e-20() 76/81(94%) 4/81(4%) Plus/Minus

Features:

Query 1 tttttttttAATGATACGGCGACCACCGAGATCTACACAGGCGAAG--ACACTCTTTCCC 58 |||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| Sbjct 29989 TTTTTTTTTAATGATACGGCGACCACCGAGATCTACACTGG--AAGCAACACTCTTTCCC 29932 Query 59 TACACGACGCTCTTCCGATCT 79 ||||||||||||||||||||| Sbjct 29931 TACACGACGCTCTTCCGATCT 29911

Download GenBank Graphics Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV197136.1Length: 30102Number of Matches: 1

Related Information

Range 1: 29913 to 29991GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

119 bits(64) 4e-20() 74/79(94%) 0/79(0%) Plus/Minus

Features:

Query 1 tttttttttAATGATACGGCGACCACCGAGATCTACACAGGCGAAGACACTCTTTCCCTA 60 |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 29991 TTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCGGCATTAACACTCTTTCCCTA 29932 Query 61 CACGACGCTCTTCCGATCT 79 ||||||||||||||||||| Sbjct 29931 CACGACGCTCTTCCGATCT 29913

Download GenBank Graphics Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV196488.1Length: 30094Number of Matches: 1

Related Information

Range 1: 29914 to 29992GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

119 bits(64) 4e-20() 74/79(94%) 0/79(0%) Plus/Minus

Features:

Query 1 tttttttttAATGATACGGCGACCACCGAGATCTACACAGGCGAAGACACTCTTTCCCTA 60 |||||||||||||||||||||||||||||||||||||| | || |||||||||||||| Sbjct 29992 TTTTTTTTTAATGATACGGCGACCACCGAGATCTACACGGAAGAGAACACTCTTTCCCTA 29933 Query 61 CACGACGCTCTTCCGATCT 79 ||||||||||||||||||| Sbjct 29932 CACGACGCTCTTCCGATCT 29914

Download GenBank Graphics
Sort by:
Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV196275.1Length: 30423Number of Matches: 2

Related Information

Range 1: 29993 to 30071GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

119 bits(64) 4e-20() 75/80(94%) 2/80(2%) Plus/Minus

Features:

Query 1 tttttttttAATGATACGGCGACCACCGAGATCTACAC-AGGCGAAGACACTCTTTCCCT 59 |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| Sbjct 30071 TTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCAGGTTCA-ACACTCTTTCCCT 30013 Query 60 ACACGACGCTCTTCCGATCT 79 |||||||||||||||||||| Sbjct 30012 ACACGACGCTCTTCCGATCT 29993

Range 2: 45 to 118GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score Expect Identities Gaps Strand Frame

110 bits(59) 3e-17() 70/75(93%) 2/75(2%) Plus/Plus

Features:

Query 3 tttttttAATGATACGGCGACCACCGAGATCTACAC-AGGCGAAGACACTCTTTCCCTAC 61 |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| Sbjct 45 TTTTTTTAATGATACGGCGACCACCGAGATCTACACCAGGTTCA-ACACTCTTTCCCTAC 103 Query 62 ACGACGCTCTTCCGA 76 ||||||||||||||| Sbjct 104 ACGACGCTCTTCCGA 118

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
122 bits(66)	3e-21()	75/79(95%)	2/79(2%)	Plus/Plus

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
62.1 bits(33)	0.008()	33/33(100%)	0/33(0%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
119 bits(64)	4e-20()	76/81(94%)	4/81(4%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
119 bits(64)	4e-20()	74/79(94%)	0/79(0%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
119 bits(64)	4e-20()	74/79(94%)	0/79(0%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
119 bits(64)	4e-20()	75/80(94%)	2/80(2%)	Plus/Minus

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
110 bits(59)	3e-17()	70/75(93%)	2/75(2%)	Plus/Plus

Taxonomy

86 sequences selected
Help

Lineage

Lineage Report
Organism	Blast Name	Score	Number of Hits	Description
Severe acute respiratory syndrome coronavirus 2	viruses	122	86	Severe acute respiratory syndrome coronavirus 2 hits

Organism

Organism Report
Description	Score	E value	Accession
Severe acute respiratory syndrome coronavirus 2 [viruses] Next Previous First
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	122	3e-21	OV196298
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	119	4e-20	OV197189
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	119	4e-20	OV197136
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	119	4e-20	OV196488
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	119	4e-20	OV196275
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	119	4e-20	OV195924
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	119	4e-20	OV195900
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	113	2e-18	OV197539
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	113	2e-18	OV196499
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	113	2e-18	OV195202
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	113	2e-18	OV195277
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	110	3e-17	OV016109
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	108	1e-16	OV197600
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	106	3e-16	OV197487
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	106	3e-16	OV196273
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	95.3	8e-13	OV197187
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	93.5	3e-12	OV377772
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	91.6	1e-11	OY637058
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	89.8	4e-11	OU471411
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	86.1	5e-10	OY636195
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	86.1	5e-10	OV196890
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	84.2	2e-09	OY635503
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	84.2	2e-09	OY654433
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	84.2	2e-09	OV196177
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	82.4	6e-09	OY636767
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	82.4	6e-09	OY702405
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	82.4	6e-09	OY650818
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	80.5	2e-08	OY712705
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	80.5	2e-08	OV195597
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	78.7	8e-08	OY632263
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	78.7	8e-08	OY697486
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	78.7	8e-08	OY629456
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	76.8	3e-07	OY676908
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	75.0	1e-06	OY700800
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	75.0	1e-06	OY712376
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	75.0	1e-06	OY694998
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	73.1	4e-06	OY635760
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	73.1	4e-06	OY672891
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	73.1	4e-06	OV196096
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	69.4	5e-05	OY698248
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	69.4	5e-05	OY652159
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	69.4	5e-05	OV196492
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	69.4	5e-05	OV196022
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	2e-04	OY629072
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	2e-04	OY697624
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	2e-04	OY630371
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	2e-04	OY688032
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	2e-04	OY680574
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	67.6	2e-04	OY271421
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	6e-04	OY628901
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	6e-04	OY679872
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	6e-04	OY676332
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	6e-04	OY647872
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.002	OY703170
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.002	OY689820
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.002	OY684615
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.002	OY695939
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.002	OY695365
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.002	OY695242
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	0.002	OY658535
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	63.9	0.002	OV196000
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY636513
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY626210
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY625266
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY624745
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY630149
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY630060
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY711698
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY710775
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY708354
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY694257
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY688217
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY679187
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY693509
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY658031
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY662395
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY659958
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY643770
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY642760
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY642376
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY660716
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	0.008	OY654510
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	0.008	OV196584
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	0.008	OV196467
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	60.2	0.027	OY717486
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	60.2	0.027	OY691424

Taxonomy

Taxonomy Report
Taxonomy	Number of hits	Number of Organisms	Description
Severe acute respiratory syndrome coronavirus 2	86	1	Severe acute respiratory syndrome coronavirus 2 hits

Filter Results

Sequences producing significant alignments