(cache)NCBI Blast:emb|LR789910.1|

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Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	250
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Feb 19, 2025 7:30 PM
Number of letters	237,251,919,109
Number of sequences	7,971,121
Entrez query	Includes: Severe acute respiratory syndrome coronavirus 2 (taxid:2697049) Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	35
Effective length of query	670
Effective length of database	236972929874
Effective search space	158771863015580
Effective search space used	158771863015580

Your search is limited to records that include: Severe acute respiratory syndrome coronavirus 2 (taxid:2697049)

Job Title

emb|LR789910.1| ...

RID

VP0E8E9D016 Search expires on 02-24 18:08 pm

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BLASTN

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Database

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Title:Nucleotide collection (nt)
Description:The nucleotide collection consists of GenBank+EMBL+DDBJ+PDB+RefSeq sequences, but excludes EST, STS, GSS, WGS, TSA, patent sequences as well as phase 0, 1, and 2 HTGS sequences and sequences longer than 100Mb. The database is non-redundant. Identical sequences have been merged into one entry, while preserving the accession, GI, title and taxonomy information for each entry.
Molecule Type:mixed DNA
Update date:2025/02/22
Number of sequences:112591598

Query ID

LR789910.1

Description

Phallusia mammillata mRNA for 40S ribosomal protein S8 (Rps8-001 gene) ...

Molecule type

nucleic acid

Query Length

705

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89 sequences selected

, Reading indexes 1-5, displaying indexes 1-5, Reading indexes 6-10, displaying indexes 6-10, Reading indexes 11-15

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq OY694257.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	71.3	71.3	6%	5e-08	97.62%	29833	OY694257.1
2Select seq OY688032.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	69.4	69.4	6%	2e-07	97.56%	29838	OY688032.1
3Select seq OY654510.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	69.4	69.4	6%	2e-07	97.56%	29834	OY654510.1
4Select seq OY636195.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	5%	7e-07	100.00%	29852	OY636195.1
5Select seq OY632263.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	5%	7e-07	100.00%	29431	OY632263.1
6Select seq OY702405.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	5%	7e-07	100.00%	29864	OY702405.1
7Select seq OY629456.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	5%	7e-07	100.00%	29806	OY629456.1
8Select seq OY712705.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	5%	7e-07	100.00%	29840	OY712705.1
9Select seq OY695242.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	6%	7e-07	97.44%	29846	OY695242.1
10Select seq OY694998.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	5%	7e-07	100.00%	29865	OY694998.1
11Select seq OY650818.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	5%	7e-07	100.00%	29859	OY650818.1
12Select seq OV197539.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	6%	7e-07	97.44%	30057	OV197539.1
13Select seq OY636513.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	5%	3e-06	100.00%	29868	OY636513.1
14Select seq OY635760.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	5%	3e-06	100.00%	29868	OY635760.1
15Select seq OY624745.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	5%	3e-06	100.00%	29841	OY624745.1
16Select seq OY697486.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	5%	3e-06	100.00%	29835	OY697486.1
17Select seq OY700800.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	5%	3e-06	100.00%	29828	OY700800.1
18Select seq OY710775.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	5%	3e-06	100.00%	29837	OY710775.1
19Select seq OY708354.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	5%	3e-06	100.00%	29843	OY708354.1
20Select seq OY689820.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	5%	3e-06	100.00%	29803	OY689820.1
21Select seq OY680574.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	5%	3e-06	100.00%	29863	OY680574.1
22Select seq OY679872.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	5%	3e-06	100.00%	29830	OY679872.1
23Select seq OY679187.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	5%	3e-06	100.00%	29846	OY679187.1
24Select seq OY676332.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	6%	3e-06	93.33%	29828	OY676332.1
25Select seq OY672891.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	5%	3e-06	100.00%	29827	OY672891.1
26Select seq OY695939.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	6%	3e-06	93.18%	29845	OY695939.1
27Select seq OY658535.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	6%	3e-06	95.24%	29842	OY658535.1
28Select seq OV197189.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	5%	3e-06	97.37%	30094	OV197189.1
29Select seq OV197187.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	6%	3e-06	93.18%	30208	OV197187.1
30Select seq OV196499.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	5%	3e-06	97.37%	30525	OV196499.1
31Select seq OV196177.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	5%	3e-06	100.00%	30003	OV196177.1
32Select seq OY636767.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	5%	9e-06	100.00%	29479	OY636767.1
33Select seq OY635503.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	5%	9e-06	100.00%	29836	OY635503.1
34Select seq OY629072.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	5%	9e-06	100.00%	29836	OY629072.1
35Select seq OY698248.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	5%	9e-06	100.00%	29820	OY698248.1
36Select seq OY630149.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	5%	9e-06	100.00%	29449	OY630149.1
37Select seq OY712376.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	5%	9e-06	100.00%	29858	OY712376.1
38Select seq OY688217.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	5%	9e-06	100.00%	29857	OY688217.1
39Select seq OY684615.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	5%	9e-06	100.00%	29840	OY684615.1
40Select seq OY676908.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	5%	9e-06	100.00%	29700	OY676908.1
41Select seq OY647872.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	5%	9e-06	100.00%	29836	OY647872.1
42Select seq OY643770.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	5%	9e-06	97.30%	29846	OY643770.1
43Select seq OY660716.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	6%	9e-06	93.18%	29830	OY660716.1
44Select seq OV197600.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	5%	9e-06	97.30%	30105	OV197600.1
45Select seq OV197136.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	5%	9e-06	97.30%	30102	OV197136.1
46Select seq OV196492.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	5%	9e-06	100.00%	30243	OV196492.1
47Select seq OV196488.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	5%	9e-06	97.30%	30094	OV196488.1
48Select seq OV196298.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	125	5%	9e-06	100.00%	30559	OV196298.1
49Select seq OV196275.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	125	5%	9e-06	97.30%	30423	OV196275.1
50Select seq OV195924.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	125	9%	9e-06	97.30%	30333	OV195924.1
51Select seq OV195900.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	120	9%	9e-06	97.30%	30109	OV195900.1
52Select seq OV195202.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	127	5%	9e-06	100.00%	30221	OV195202.1
53Select seq OV195277.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	5%	9e-06	100.00%	30090	OV195277.1
54Select seq OY637058.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29853	OY637058.1
55Select seq OY628901.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29833	OY628901.1
56Select seq OY626210.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29831	OY626210.1
57Select seq OY625266.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29959	OY625266.1
58Select seq OY697624.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29863	OY697624.1
59Select seq OY703170.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29848	OY703170.1
60Select seq OY630371.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29839	OY630371.1
61Select seq OY630060.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29829	OY630060.1
62Select seq OY717486.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	6%	3e-05	95.00%	29891	OY717486.1
63Select seq OY711698.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29912	OY711698.1
64Select seq OY695365.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29803	OY695365.1
65Select seq OY693509.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29822	OY693509.1
66Select seq OY658031.2	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29825	OY658031.2
67Select seq OY662395.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29831	OY662395.1
68Select seq OY659958.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29823	OY659958.1
69Select seq OY652159.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29841	OY652159.1
70Select seq OY642760.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29784	OY642760.1
71Select seq OY642376.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29848	OY642376.1
72Select seq OY654433.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29830	OY654433.1
73Select seq OY271421.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29815	OY271421.1
74Select seq OV196890.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	30101	OV196890.1
75Select seq OV196584.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	30066	OV196584.1
76Select seq OV196467.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	30053	OV196467.1
77Select seq OV196273.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	30444	OV196273.1
78Select seq OV196096.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	29646	OV196096.1
79Select seq OV196022.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	122	5%	3e-05	100.00%	30562	OV196022.1
80Select seq OV196000.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	30106	OV196000.1
81Select seq OV195597.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	30117	OV195597.1
82Select seq OV016109.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	5%	3e-05	100.00%	30090	OV016109.1
83Select seq OY691424.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	60.2	60.2	5%	1e-04	97.22%	29828	OY691424.1
84Select seq OY699808.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	58.4	58.4	5%	4e-04	97.14%	29824	OY699808.1
85Select seq OY685715.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	58.4	58.4	5%	4e-04	97.14%	29854	OY685715.1
86Select seq OY677355.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	58.4	58.4	4%	4e-04	100.00%	29821	OY677355.1
87Select seq OV195847.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	58.4	58.4	4%	4e-04	100.00%	30308	OV195847.1
88Select seq OY646141.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	54.7	54.7	4%	0.006	100.00%	29827	OY646141.1
89Select seq OV197487.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	52.8	52.8	5%	0.020	94.29%	30104	OV197487.1

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  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
- 89 sequences selected
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Distribution of the top 95 Blast Hits on 89 subject sequences

Query

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  Alignment view: Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
  
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- 89 sequences selected
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Loading alignment... for sequences gi|2557657929,gi|2557656807,gi|2557390373,gi|2565363363,gi|2565358908 Reading indexes 1-5

Download GenBank Graphics Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite
Sequence ID: OY694257.1Length: 29833Number of Matches: 1

Related Information

Range 1: 22474 to 22514GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

71.3 bits(38) 5e-08() 41/42(98%) 1/42(2%) Plus/Minus

Features:

Query 32 CTACACTCTTTCCCTACACGACGCTCTTCCGATCTCAGAAGT 73 ||||||||||||||||||||||||||||||||||| |||||| Sbjct 22514 CTACACTCTTTCCCTACACGACGCTCTTCCGATCT-AGAAGT 22474

Download GenBank Graphics Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite
Sequence ID: OY688032.1Length: 29838Number of Matches: 1

Related Information

Range 1: 19641 to 19681GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

69.4 bits(37) 2e-07() 40/41(98%) 1/41(2%) Plus/Minus

Features:

Query 29 GATC-TACACTCTTTCCCTACACGACGCTCTTCCGATCTCA 68 |||| |||||||||||||||||||||||||||||||||||| Sbjct 19681 GATCGTACACTCTTTCCCTACACGACGCTCTTCCGATCTCA 19641

Download GenBank Graphics Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite
Sequence ID: OY654510.1Length: 29834Number of Matches: 1

Related Information

Range 1: 22480 to 22519GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

69.4 bits(37) 2e-07() 40/41(98%) 1/41(2%) Plus/Minus

Features:

Query 33 TACACTCTTTCCCTACACGACGCTCTTCCGATCTCAGAAGT 73 |||||||||||||||||||||||||||||||||| |||||| Sbjct 22519 TACACTCTTTCCCTACACGACGCTCTTCCGATCT-AGAAGT 22480

Download GenBank Graphics Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite
Sequence ID: OY636195.1Length: 29852Number of Matches: 1

Related Information

Range 1: 19630 to 19665GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

67.6 bits(36) 7e-07() 36/36(100%) 0/36(0%) Plus/Minus

Features:

Query 33 TACACTCTTTCCCTACACGACGCTCTTCCGATCTCA 68 |||||||||||||||||||||||||||||||||||| Sbjct 19665 TACACTCTTTCCCTACACGACGCTCTTCCGATCTCA 19630

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Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite
Sequence ID: OY632263.1Length: 29431Number of Matches: 1

Related Information

Range 1: 19239 to 19274GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

67.6 bits(36) 7e-07() 36/36(100%) 0/36(0%) Plus/Minus

Features:

Query 33 TACACTCTTTCCCTACACGACGCTCTTCCGATCTCA 68 |||||||||||||||||||||||||||||||||||| Sbjct 19274 TACACTCTTTCCCTACACGACGCTCTTCCGATCTCA 19239
Loading alignment... for sequences gi|2560517312,gi|2560502370,gi|2560265959,gi|2557638320,gi|2557633336 Reading indexes 6-10

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Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite
Sequence ID: OY702405.1Length: 29864Number of Matches: 1

Related Information

Range 1: 2228 to 2263GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

67.6 bits(36) 7e-07() 36/36(100%) 0/36(0%) Plus/Minus

Features:

Query 32 CTACACTCTTTCCCTACACGACGCTCTTCCGATCTC 67 |||||||||||||||||||||||||||||||||||| Sbjct 2263 CTACACTCTTTCCCTACACGACGCTCTTCCGATCTC 2228

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Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite
Sequence ID: OY629456.1Length: 29806Number of Matches: 1

Related Information

Range 1: 19614 to 19649GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

67.6 bits(36) 7e-07() 36/36(100%) 0/36(0%) Plus/Minus

Features:

Query 33 TACACTCTTTCCCTACACGACGCTCTTCCGATCTCA 68 |||||||||||||||||||||||||||||||||||| Sbjct 19649 TACACTCTTTCCCTACACGACGCTCTTCCGATCTCA 19614

Download GenBank Graphics Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite
Sequence ID: OY712705.1Length: 29840Number of Matches: 1

Related Information

Range 1: 19637 to 19672GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

67.6 bits(36) 7e-07() 36/36(100%) 0/36(0%) Plus/Minus

Features:

Query 33 TACACTCTTTCCCTACACGACGCTCTTCCGATCTCA 68 |||||||||||||||||||||||||||||||||||| Sbjct 19672 TACACTCTTTCCCTACACGACGCTCTTCCGATCTCA 19637

Download GenBank Graphics Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite
Sequence ID: OY695242.1Length: 29846Number of Matches: 1

Related Information

Range 1: 21738 to 21776GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

67.6 bits(36) 7e-07() 38/39(97%) 0/39(0%) Plus/Minus

Features:

Query 30 ATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCA 68 ||| ||||||||||||||||||||||||||||||||||| Sbjct 21776 ATCCACACTCTTTCCCTACACGACGCTCTTCCGATCTCA 21738

Download GenBank Graphics Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite
Sequence ID: OY694998.1Length: 29865Number of Matches: 1

Related Information

Range 1: 19652 to 19687GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

67.6 bits(36) 7e-07() 36/36(100%) 0/36(0%) Plus/Minus

Features:

Query 33 TACACTCTTTCCCTACACGACGCTCTTCCGATCTCA 68 |||||||||||||||||||||||||||||||||||| Sbjct 19687 TACACTCTTTCCCTACACGACGCTCTTCCGATCTCA 19652
Loading alignment... for sequences gi|2557414556,gi|2165837646,gi|2565364073,gi|2565363489,gi|2565351231 Reading indexes 11-15
Error loading alignment ...requests:1 status:0Try again

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
71.3 bits(38)	5e-08()	41/42(98%)	1/42(2%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
69.4 bits(37)	2e-07()	40/41(98%)	1/41(2%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
69.4 bits(37)	2e-07()	40/41(98%)	1/41(2%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
67.6 bits(36)	7e-07()	36/36(100%)	0/36(0%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
67.6 bits(36)	7e-07()	36/36(100%)	0/36(0%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
67.6 bits(36)	7e-07()	36/36(100%)	0/36(0%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
67.6 bits(36)	7e-07()	36/36(100%)	0/36(0%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
67.6 bits(36)	7e-07()	36/36(100%)	0/36(0%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
67.6 bits(36)	7e-07()	38/39(97%)	0/39(0%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
67.6 bits(36)	7e-07()	36/36(100%)	0/36(0%)	Plus/Minus

Taxonomy

89 sequences selected
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Lineage

Lineage Report
Organism	Blast Name	Score	Number of Hits	Description
Severe acute respiratory syndrome coronavirus 2	viruses	71.3	89	Severe acute respiratory syndrome coronavirus 2 hits

Organism

Organism Report
Description	Score	E value	Accession
Severe acute respiratory syndrome coronavirus 2 [viruses] Next Previous First
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	71.3	5e-08	OY694257
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	69.4	2e-07	OY688032
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	69.4	2e-07	OY654510
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	7e-07	OY636195
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	7e-07	OY632263
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	7e-07	OY702405
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	7e-07	OY629456
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	7e-07	OY712705
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	7e-07	OY695242
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	7e-07	OY694998
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	7e-07	OY650818
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	67.6	7e-07	OV197539
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	3e-06	OY636513
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	3e-06	OY635760
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	3e-06	OY624745
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	3e-06	OY697486
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	3e-06	OY700800
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	3e-06	OY710775
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	3e-06	OY708354
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	3e-06	OY689820
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	3e-06	OY680574
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	3e-06	OY679872
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	3e-06	OY679187
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	3e-06	OY676332
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	3e-06	OY672891
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	3e-06	OY695939
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	3e-06	OY658535
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	65.8	3e-06	OV197189
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	65.8	3e-06	OV197187
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	65.8	3e-06	OV196499
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	65.8	3e-06	OV196177
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	9e-06	OY636767
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	9e-06	OY635503
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	9e-06	OY629072
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	9e-06	OY698248
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	9e-06	OY630149
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	9e-06	OY712376
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	9e-06	OY688217
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	9e-06	OY684615
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	9e-06	OY676908
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	9e-06	OY647872
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	9e-06	OY643770
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	9e-06	OY660716
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	63.9	9e-06	OV197600
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	63.9	9e-06	OV197136
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	63.9	9e-06	OV196492
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	63.9	9e-06	OV196488
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	63.9	9e-06	OV196298
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	63.9	9e-06	OV196275
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	63.9	9e-06	OV195924
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	63.9	9e-06	OV195900
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	63.9	9e-06	OV195202
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	63.9	9e-06	OV195277
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY637058
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY628901
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY626210
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY625266
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY697624
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY703170
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY630371
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY630060
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY717486
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY711698
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY695365
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY693509
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY658031
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY662395
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY659958
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY652159
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY642760
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY642376
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	3e-05	OY654433
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	3e-05	OY271421
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	3e-05	OV196890
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	3e-05	OV196584
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	3e-05	OV196467
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	3e-05	OV196273
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	3e-05	OV196096
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	3e-05	OV196022
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	3e-05	OV196000
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	3e-05	OV195597
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	62.1	3e-05	OV016109
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	60.2	1e-04	OY691424
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	58.4	4e-04	OY699808
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	58.4	4e-04	OY685715
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	58.4	4e-04	OY677355
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	58.4	4e-04	OV195847
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	54.7	0.006	OY646141
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	52.8	0.020	OV197487

Taxonomy

Taxonomy Report
Taxonomy	Number of hits	Number of Organisms	Description
Severe acute respiratory syndrome coronavirus 2	89	1	Severe acute respiratory syndrome coronavirus 2 hits

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Sequences producing significant alignments