(cache)NCBI Blast:ref|NZ_CAXQGC010000264.1|

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Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	500
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Feb 19, 2025 7:30 PM
Number of letters	237,251,919,109
Number of sequences	7,971,121
Entrez query	Includes: Severe acute respiratory syndrome coronavirus 2 (taxid:2697049) Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	38
Effective length of query	11505
Effective length of database	236949016511
Effective search space	2726098434959055
Effective search space used	2726098434959055

Your search is limited to records that include: Severe acute respiratory syndrome coronavirus 2 (taxid:2697049)

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ref|NZ_CAXQGC010000264.1| ...

RID

VMK16ZDF013 Search expires on 02-24 05:13 am

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BLASTN

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Title:Nucleotide collection (nt)
Description:The nucleotide collection consists of GenBank+EMBL+DDBJ+PDB+RefSeq sequences, but excludes EST, STS, GSS, WGS, TSA, patent sequences as well as phase 0, 1, and 2 HTGS sequences and sequences longer than 100Mb. The database is non-redundant. Identical sequences have been merged into one entry, while preserving the accession, GI, title and taxonomy information for each entry.
Molecule Type:mixed DNA
Update date:2025/02/21
Number of sequences:112591598

Query ID

NZ_CAXQGC010000264.1

Description

MAG: Pararhodobacter marinus isolate 02um_C4Z0801_2.44 k127_376331, whole genome shotgun sequence ...

Molecule type

dna

Query Length

11543

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85 sequences selected

, Reading indexes 1-5, displaying indexes 1-5

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq OV197539.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	119	119	1%	3e-21	94.81%	30057	OV197539.1
2Select seq OV195900.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	113	188	1%	2e-19	93.42%	30109	OV195900.1
3Select seq OV197600.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	108	108	1%	7e-18	92.31%	30105	OV197600.1
4Select seq OV197136.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	108	108	1%	7e-18	92.21%	30102	OV197136.1
5Select seq OV196275.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	108	209	1%	7e-18	92.21%	30423	OV196275.1
6Select seq OV195202.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	108	214	1%	7e-18	92.21%	30221	OV195202.1
7Select seq OV195277.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	108	108	1%	7e-18	92.11%	30090	OV195277.1
8Select seq OV195924.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	106	210	1%	3e-17	92.11%	30333	OV195924.1
9Select seq OV197189.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	102	102	1%	3e-16	90.79%	30094	OV197189.1
10Select seq OV196499.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	102	102	1%	3e-16	90.91%	30525	OV196499.1
11Select seq OV196488.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	102	102	1%	3e-16	90.79%	30094	OV196488.1
12Select seq OV196298.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	99.0	162	1%	4e-15	90.67%	30559	OV196298.1
13Select seq OV016109.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	99.0	99.0	1%	4e-15	89.74%	30090	OV016109.1
14Select seq OV196273.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	95.3	95.3	1%	6e-14	88.31%	30444	OV196273.1
15Select seq OV197187.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	91.6	91.6	1%	7e-13	92.31%	30208	OV197187.1
16Select seq OY712376.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	84.2	84.2	0%	1e-10	93.10%	29858	OY712376.1
17Select seq OY650818.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	84.2	84.2	0%	1e-10	93.10%	29859	OY650818.1
18Select seq OV196177.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	84.2	84.2	1%	1e-10	85.71%	30003	OV196177.1
19Select seq OY688032.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	82.4	82.4	0%	4e-10	94.34%	29838	OY688032.1
20Select seq OY676332.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	82.4	82.4	0%	4e-10	92.86%	29828	OY676332.1
21Select seq OY636767.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	80.5	80.5	1%	2e-09	90.16%	29479	OY636767.1
22Select seq OY700800.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	80.5	80.5	1%	2e-09	91.38%	29828	OY700800.1
23Select seq OV196890.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	80.5	80.5	1%	2e-09	91.53%	30101	OV196890.1
24Select seq OV195597.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	80.5	80.5	1%	2e-09	91.38%	30117	OV195597.1
25Select seq OY637058.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	78.7	78.7	0%	6e-09	91.38%	29853	OY637058.1
26Select seq OY636195.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	78.7	78.7	0%	6e-09	91.53%	29852	OY636195.1
27Select seq OY702405.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	78.7	78.7	0%	6e-09	91.53%	29864	OY702405.1
28Select seq OY712705.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	78.7	78.7	0%	6e-09	91.38%	29840	OY712705.1
29Select seq OY694998.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	78.7	78.7	0%	6e-09	91.38%	29865	OY694998.1
30Select seq OV196022.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	76.8	142	0%	2e-08	92.45%	30562	OV196022.1
31Select seq OY676908.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	75.0	75.0	0%	7e-08	90.91%	29700	OY676908.1
32Select seq OY643770.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	75.0	75.0	0%	7e-08	92.59%	29846	OY643770.1
33Select seq OV196467.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	75.0	75.0	0%	7e-08	93.88%	30053	OV196467.1
34Select seq OV196096.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	75.0	75.0	1%	7e-08	89.66%	29646	OV196096.1
35Select seq OY635503.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	73.1	73.1	0%	3e-07	89.83%	29836	OY635503.1
36Select seq OY635760.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	71.3	71.3	0%	9e-07	90.57%	29868	OY635760.1
37Select seq OY680574.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	71.3	71.3	0%	9e-07	90.74%	29863	OY680574.1
38Select seq OY679187.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	71.3	71.3	0%	9e-07	92.31%	29846	OY679187.1
39Select seq OY672891.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	71.3	71.3	0%	9e-07	90.74%	29827	OY672891.1
40Select seq OY659958.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	71.3	71.3	0%	9e-07	92.31%	29823	OY659958.1
41Select seq OV196492.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	71.3	71.3	0%	9e-07	89.47%	30243	OV196492.1
42Select seq OY642376.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	69.4	69.4	0%	3e-06	90.57%	29848	OY642376.1
43Select seq OY654433.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	67.6	67.6	0%	1e-05	87.72%	29830	OY654433.1
44Select seq OY697486.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	89.09%	29835	OY697486.1
45Select seq OY703170.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	100.00%	29848	OY703170.1
46Select seq OY629456.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	89.09%	29806	OY629456.1
47Select seq OY688217.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	90.20%	29857	OY688217.1
48Select seq OY693509.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	100.00%	29822	OY693509.1
49Select seq OY658031.2	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	100.00%	29825	OY658031.2
50Select seq OY658535.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	65.8	65.8	0%	4e-05	100.00%	29842	OY658535.1
51Select seq OY636513.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29868	OY636513.1
52Select seq OY628901.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29833	OY628901.1
53Select seq OY629072.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29836	OY629072.1
54Select seq OY626210.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29831	OY626210.1
55Select seq OY625266.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29959	OY625266.1
56Select seq OY624745.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29841	OY624745.1
57Select seq OY697624.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	87.93%	29863	OY697624.1
58Select seq OY630060.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29829	OY630060.1
59Select seq OY717486.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29891	OY717486.1
60Select seq OY711698.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29912	OY711698.1
61Select seq OY710775.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29837	OY710775.1
62Select seq OY689820.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29803	OY689820.1
63Select seq OY684615.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29840	OY684615.1
64Select seq OY695939.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29845	OY695939.1
65Select seq OY695365.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29803	OY695365.1
66Select seq OY695242.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	97.37%	29846	OY695242.1
67Select seq OY691424.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	97.37%	29828	OY691424.1
68Select seq OY662395.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29831	OY662395.1
69Select seq OY652159.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29841	OY652159.1
70Select seq OY647872.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	29836	OY647872.1
71Select seq OY271421.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	97.30%	29815	OY271421.1
72Select seq OV196584.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	30066	OV196584.1
73Select seq OV196000.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	63.9	63.9	0%	2e-04	100.00%	30106	OV196000.1
74Select seq OY632263.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	6e-04	100.00%	29431	OY632263.1
75Select seq OY698248.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	6e-04	100.00%	29820	OY698248.1
76Select seq OY630371.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	6e-04	100.00%	29839	OY630371.1
77Select seq OY630149.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	6e-04	100.00%	29449	OY630149.1
78Select seq OY708354.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	6e-04	100.00%	29843	OY708354.1
79Select seq OY694257.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	6e-04	100.00%	29833	OY694257.1
80Select seq OY679872.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	6e-04	100.00%	29830	OY679872.1
81Select seq OY642760.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	6e-04	100.00%	29784	OY642760.1
82Select seq OY660716.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	6e-04	97.30%	29830	OY660716.1
83Select seq OY654510.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	62.1	62.1	0%	6e-04	100.00%	29834	OY654510.1
84Select seq OV195847.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	Severe acute respiratory syndrome coronavirus 2	NA	2697049	60.2	60.2	0%	0.002	100.00%	30308	OV195847.1
85Select seq OY677355.1	Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	Severe acute respiratory syndrome coronavirus 2	NA	2697049	58.4	58.4	0%	0.007	100.00%	29821	OY677355.1

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  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
- 85 sequences selected
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Distribution of the top 91 Blast Hits on 85 subject sequences

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  Alignment view: Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
  
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- 85 sequences selected
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Loading alignment... for sequences gi|2165837646,gi|2165834194,gi|2165837707,gi|2165836832,gi|2165835007 Reading indexes 1-5

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Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV197539.1Length: 30057Number of Matches: 1

Related Information

Range 1: 29873 to 29948GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

119 bits(64) 3e-21() 73/77(95%) 2/77(2%) Plus/Minus

Features:

Query 15 TTTTTAATGATACGGCGCCCACCGAGATCTACACGCG-ATCTCACACTCTTTCCCTACAC 73 ||||||||||||||||| |||||||||||||||| || || ||||||||||||||||||| Sbjct 29948 TTTTTAATGATACGGCGACCACCGAGATCTACACTCGGAT-TCACACTCTTTCCCTACAC 29890 Query 74 GACGCTCTTCCGATCTG 90 ||||||||||||||||| Sbjct 29889 GACGCTCTTCCGATCTG 29873

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Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV195900.1Length: 30109Number of Matches: 2

Related Information

Range 1: 29991 to 30066GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

113 bits(61) 2e-19() 71/76(93%) 0/76(0%) Plus/Minus

Features:

Query 15 TTTTTAATGATACGGCGCCCACCGAGATCTACACGCGATCTCACACTCTTTCCCTACACG 74 ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct 30066 TTTTTAATGATACGGCGACCACCGAGATCTACACGAGAGTACACACTCTTTCCCTACACG 30007 Query 75 ACGCTCTTCCGATCTG 90 |||||||||||||||| Sbjct 30006 ACGCTCTTCCGATCTG 29991

Range 2: 70 to 121GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score Expect Identities Gaps Strand Frame

75.0 bits(40) 7e-08() 48/52(92%) 0/52(0%) Plus/Plus

Features:

Query 35 ACCGAGATCTACACGCGATCTCACACTCTTTCCCTACACGACGCTCTTCCGA 86 ||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 70 ACCGAGATCTACACGAGAGTACACACTCTTTCCCTACACGACGCTCTTCCGA 121

Download GenBank Graphics Next Previous Descriptions

Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV197600.1Length: 30105Number of Matches: 1

Related Information

Range 1: 29915 to 29990GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

108 bits(58) 7e-18() 72/78(92%) 4/78(5%) Plus/Minus

Features:

Query 15 TTTTTAATGATACGGCGCCCACCGAGATCTACACGCGATCT-C-ACACTCTTTCCCTACA 72 ||||||||||||||||| |||||||||||||||| | | || | |||||||||||||||| Sbjct 29990 TTTTTAATGATACGGCGACCACCGAGATCTACAC-C-AACTCCAACACTCTTTCCCTACA 29933 Query 73 CGACGCTCTTCCGATCTG 90 |||||||||||||||||| Sbjct 29932 CGACGCTCTTCCGATCTG 29915

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Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV197136.1Length: 30102Number of Matches: 1

Related Information

Range 1: 29912 to 29987GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

108 bits(58) 7e-18() 71/77(92%) 2/77(2%) Plus/Minus

Features:

Query 15 TTTTTAATGATACGGCGCCCACCGAGATCTACAC-GCGATCTCACACTCTTTCCCTACAC 73 ||||||||||||||||| |||||||||||||||| | || | ||||||||||||||||| Sbjct 29987 TTTTTAATGATACGGCGACCACCGAGATCTACACCGGCAT-TAACACTCTTTCCCTACAC 29929 Query 74 GACGCTCTTCCGATCTG 90 ||||||||||||||||| Sbjct 29928 GACGCTCTTCCGATCTG 29912

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Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1
Sequence ID: OV196275.1Length: 30423Number of Matches: 2

Related Information

Range 1: 29992 to 30067GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Identities Gaps Strand Frame

108 bits(58) 7e-18() 71/77(92%) 2/77(2%) Plus/Minus

Features:

Query 15 TTTTTAATGATACGGCGCCCACCGAGATCTACACGCGATCTC-ACACTCTTTCCCTACAC 73 ||||||||||||||||| |||||||||||||||| | | || ||||||||||||||||| Sbjct 30067 TTTTTAATGATACGGCGACCACCGAGATCTACACCAGGT-TCAACACTCTTTCCCTACAC 30009 Query 74 GACGCTCTTCCGATCTG 90 ||||||||||||||||| Sbjct 30008 GACGCTCTTCCGATCTG 29992

Range 2: 47 to 118GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score Expect Identities Gaps Strand Frame

100 bits(54) 1e-15() 67/73(92%) 2/73(2%) Plus/Plus

Features:

Query 15 TTTTTAATGATACGGCGCCCACCGAGATCTACACGCGATCTC-ACACTCTTTCCCTACAC 73 ||||||||||||||||| |||||||||||||||| | | || ||||||||||||||||| Sbjct 47 TTTTTAATGATACGGCGACCACCGAGATCTACACCAGGT-TCAACACTCTTTCCCTACAC 105 Query 74 GACGCTCTTCCGA 86 ||||||||||||| Sbjct 106 GACGCTCTTCCGA 118

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
119 bits(64)	3e-21()	73/77(95%)	2/77(2%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
113 bits(61)	2e-19()	71/76(93%)	0/76(0%)	Plus/Minus

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
75.0 bits(40)	7e-08()	48/52(92%)	0/52(0%)	Plus/Plus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
108 bits(58)	7e-18()	72/78(92%)	4/78(5%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
108 bits(58)	7e-18()	71/77(92%)	2/77(2%)	Plus/Minus

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
108 bits(58)	7e-18()	71/77(92%)	2/77(2%)	Plus/Minus

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
100 bits(54)	1e-15()	67/73(92%)	2/73(2%)	Plus/Plus

Taxonomy

85 sequences selected
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Lineage

Lineage Report
Organism	Blast Name	Score	Number of Hits	Description
Severe acute respiratory syndrome coronavirus 2	viruses	119	85	Severe acute respiratory syndrome coronavirus 2 hits

Organism

Organism Report
Description	Score	E value	Accession
Severe acute respiratory syndrome coronavirus 2 [viruses] Next Previous First
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	119	3e-21	OV197539
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	113	2e-19	OV195900
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	108	7e-18	OV197600
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	108	7e-18	OV197136
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	108	7e-18	OV196275
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	108	7e-18	OV195202
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	108	7e-18	OV195277
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	106	3e-17	OV195924
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	102	3e-16	OV197189
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	102	3e-16	OV196499
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	102	3e-16	OV196488
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	99.0	4e-15	OV196298
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	99.0	4e-15	OV016109
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	95.3	6e-14	OV196273
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	91.6	7e-13	OV197187
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	84.2	1e-10	OY712376
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	84.2	1e-10	OY650818
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	84.2	1e-10	OV196177
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	82.4	4e-10	OY688032
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	82.4	4e-10	OY676332
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	80.5	2e-09	OY636767
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	80.5	2e-09	OY700800
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	80.5	2e-09	OV196890
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	80.5	2e-09	OV195597
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	78.7	6e-09	OY637058
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	78.7	6e-09	OY636195
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	78.7	6e-09	OY702405
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	78.7	6e-09	OY712705
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	78.7	6e-09	OY694998
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	76.8	2e-08	OV196022
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	75.0	7e-08	OY676908
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	75.0	7e-08	OY643770
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	75.0	7e-08	OV196467
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	75.0	7e-08	OV196096
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	73.1	3e-07	OY635503
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	71.3	9e-07	OY635760
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	71.3	9e-07	OY680574
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	71.3	9e-07	OY679187
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	71.3	9e-07	OY672891
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	71.3	9e-07	OY659958
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	71.3	9e-07	OV196492
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	69.4	3e-06	OY642376
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	67.6	1e-05	OY654433
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY697486
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY703170
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY629456
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY688217
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY693509
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY658031
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	65.8	4e-05	OY658535
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY636513
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY628901
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY629072
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY626210
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY625266
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY624745
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY697624
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY630060
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY717486
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY711698
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY710775
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY689820
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY684615
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY695939
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY695365
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY695242
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY691424
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY662395
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY652159
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	63.9	2e-04	OY647872
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	63.9	2e-04	OY271421
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	63.9	2e-04	OV196584
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	63.9	2e-04	OV196000
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	6e-04	OY632263
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	6e-04	OY698248
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	6e-04	OY630371
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	6e-04	OY630149
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	6e-04	OY708354
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	6e-04	OY694257
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	6e-04	OY679872
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	6e-04	OY642760
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	6e-04	OY660716
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	62.1	6e-04	OY654510
Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1	60.2	0.002	OV195847
Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite	58.4	0.007	OY677355

Taxonomy

Taxonomy Report
Taxonomy	Number of hits	Number of Organisms	Description
Severe acute respiratory syndrome coronavirus 2	85	1	Severe acute respiratory syndrome coronavirus 2 hits

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Sequences producing significant alignments