(cache)NCBI Blast:gb|MT599985.1|

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Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	100
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Feb 5, 2025 3:48 PM
Number of letters	1,691,102,021,537
Number of sequences	38,389,975
Entrez query	Includes: Bacteria (taxid:2) Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	36
Effective length of query	283
Effective length of database	1689719982437
Effective search space	478190755029671
Effective search space used	478190755029671

Your search is limited to records that include: Bacteria (taxid:2)

Job Title

gb|MT599985.1| ...

RID

UETEV4EK013 Search expires on 02-09 21:10 pm

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Results for

Program

BLASTN

Citation

Database

refseq_genomes (99 databases)

See details

Title:Aeromonas hydrophila refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:18365

Title:Acinetobacter pittii refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:59642

Title:Campylobacter coli refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:90123

Title:Staphylococcus epidermidis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:152576

Title:Klebsiella michiganensis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:78436

Title:Staphylococcus haemolyticus refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:59567

Title:Lactiplantibacillus plantarum refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:60799

Title:Leptospira interrogans refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:77879

Title:Clostridioides difficile refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:416861

Title:Francisella tularensis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:72978

Title:Streptococcus pyogenes refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:49974

Title:Bordetella bronchiseptica refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:7822

Title:Chlamydia trachomatis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:569

Title:Bacillus subtilis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:36231

Title:Enterobacter cloacae refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:46669

Title:Listeria monocytogenes refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:151285

Title:Streptococcus pneumoniae refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:689310

Title:Yersinia pestis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:215815

Title:Burkholderia cepacia refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:29743

Title:Streptococcus mitis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:14035

Title:Streptococcus equi refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:28329

Title:Yersinia pseudotuberculosis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:8924

Title:Enterococcus faecalis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:189095

Title:Xanthomonas citri refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:20522

Title:Lactobacillus paracasei refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:43264

Title:Serratia marcescens refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:127013

Title:Ralstonia solanacearum refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:14467

Title:Enterococcus faecium refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:540548

Title:Lactococcus lactis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:34374

Title:Proteus mirabilis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:123157

Title:Chlamydia psittaci refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:858

Title:Burkholderia mallei refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:13473

Title:Bacteroides fragilis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:46497

Title:Shigella flexneri refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:237685

Title:Mycobacterium bovis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:7145

Title:Pseudomonas syringae refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:136252

Title:Klebsiella pneumoniae refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:2139538

Title:Streptococcus mutans refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:21266

Title:Salinispora arenicola refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:1716

Title:Acinetobacter baumannii refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:1117355

Title:Bifidobacterium longum refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:32261

Title:Haemophilus influenzae refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:39389

Title:Vibrio cholerae refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:214323

Title:Pseudomonas putida refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:28004

Title:Legionella pneumophila refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:42001

Title:Campylobacter fetus refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:6709

Title:Helicobacter pylori refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:120368

Title:Burkholderia ubonensis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:39151

Title:Staphylococcus aureus refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:900358

Title:Refseq prokaryote representative genomes (contains refseq assembly)
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:1078437

Title:Kingella kingae refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:17917

Title:Bacillus thuringiensis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:130482

Title:Lactobacillus rhamnosus refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:22206

Title:Mycobacterium abscessus refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:57697

Title:Cronobacter sakazakii refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:45871

Title:Pseudomonas aeruginosa refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:1333936

Title:Escherichia coli refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:6133015

Title:Pasteurella multocida refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:17450

Title:Campylobacter jejuni refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:152110

Title:Burkholderia cenocepacia refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:79875

Title:Tritonibacter mobilis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:3350

Title:Streptococcus suis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:179612

Title:Bordetella pertussis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:161324

Title:Xanthomonas axonopodis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:3221

Title:Mycoplasmoides pneumoniae refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:7492

Title:Neisseria gonorrhoeae refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:141592

Title:Bacillus velezensis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:24736

Title:Stenotrophomonas maltophilia refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:104953

Title:Streptococcus oralis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:9281

Title:Gardnerella vaginalis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:4358

Title:Neisseria meningitidis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:215689

Title:Salmonella enterica refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:1121378

Title:Vibrio parahaemolyticus refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:433657

Title:Citrobacter freundii refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:96662

Title:Bifidobacterium breve refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:7673

Title:Burkholderia stagnalis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:13088

Title:Clostridium botulinum refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:35022

Title:Brucella suis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:1822

Title:Pseudomonas amygdali refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:24481

Title:Yersinia enterocolitica refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:33024

Title:Mycobacterium avium refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:63065

Title:Bacillus anthracis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:30774

Title:Treponema pallidum refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:1080

Title:Mycobacterium tuberculosis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:559081

Title:Streptococcus sobrinus refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:14489

Title:Moraxella catarrhalis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:8907

Title:Brucella abortus refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:5940

Title:Streptococcus agalactiae refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:105760

Title:Enterobacter hormaechei refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:326885

Title:Oenococcus oeni refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:54849

Title:Bacillus cereus refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:162996

Title:Propionibacterium acnes refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:7615

Title:Other prokaryotic non-representative genomes
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:15950699

Title:Klebsiella oxytoca refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:42857

Title:Enterobacter asburiae refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:39698

Title:Burkholderia pseudomallei refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:226672

Title:Pseudomonas fluorescens refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:16385

Title:Shigella sonnei refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:592662

Title:Brucella melitensis refseq non-representative genome
Molecule Type:mixed DNA
Update date:2025/02/08
Number of sequences:18610

refseq_genomes - organisms
Organim inclusion
Organims name

Included: Bacteria (taxid:2)

Excluded:

Query ID

refseq_genomes - organisms
Organim inclusion	Organims name
Included:	Bacteria (taxid:2)
Excluded:

MT599985.1

Description

Homo sapiens isolate COVA3-08 anti-SARS-CoV-2 monoclonal antibody light chain variable region mRNA, partial cds ...

Molecule type

rna

Query Length

319

Other reports

Distance tree of results MSA viewer

Filter Results

Descriptions

select all
29 sequences selected

, Reading indexes 1-5, displaying indexes 1-5

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq NZ_CADFVC010000016.1	Listeria monocytogenes isolate Listeria monocytogenes strain C7, whole genome shotgun sequence	Listeria monocytogenes	NA	1639	496	496	100%	2e-135	94.46%	463	NZ_CADFVC010000016.1
2Select seq NZ_JAEIOS010000003.1	Corynebacterium meridianum strain CCM 8863 GCM70020041_3, whole genome shotgun sequence	Corynebacterium meridianum	NA	2765363	481	481	100%	6e-131	93.79%	511	NZ_JAEIOS010000003.1
3Select seq NZ_JAKJKX010000026.1	Corynebacterium parakroppenstedtii strain MC-01 NODE_33_length_591_cov_3.435798, whole genome shotgun sequence	Corynebacterium parakroppenstedtii	NA	2828363	405	405	85%	4e-108	93.73%	297	NZ_JAKJKX010000026.1
4Select seq NZ_JAWIZU010000096.1	Klebsiella pneumoniae strain PK-31 NODE_96_length_496_cov_5.894988, whole genome shotgun sequence	Klebsiella pneumoniae	NA	573	392	392	100%	3e-104	88.89%	496	NZ_JAWIZU010000096.1
5Select seq NZ_JADCLO010000057.1	Stenotrophomonas rhizophila strain GN_RF3 N_65_length_622, whole genome shotgun sequence	Stenotrophomonas rhizophila	NA	216778	374	374	85%	1e-98	91.51%	622	NZ_JADCLO010000057.1
6Select seq NZ_JAJUOS010000058.1	Rhodobacter flavimaris strain WL0062 NODE_211_length_316_cov_0.714286, whole genome shotgun sequence	Rhodobacter flavimaris	NA	2907145	353	353	74%	1e-92	93.64%	316	NZ_JAJUOS010000058.1
7Select seq NZ_JAGJTU010000065.1	Corynebacterium pyruviciproducens strain WYJY-01 Scaffold65, whole genome shotgun sequence	Corynebacterium pyruviciproducens	NA	598660	337	337	100%	1e-87	85.71%	791	NZ_JAGJTU010000065.1
8Select seq NZ_JAENPU010000069.1	Campylobacter fetus subsp. venerealis strain SA21-221439 UK9_contig_70, whole genome shotgun sequence	Campylobacter fetus subsp. venerealis	NA	32020	333	333	85%	2e-86	88.89%	421	NZ_JAENPU010000069.1
9Select seq NZ_PQTZ01000145.1	Klebsiella pneumoniae subsp. pneumoniae strain DG7190 NODE_147_length_389_cov_32.7786, whole genome shotgun sequence	Klebsiella pneumoniae subsp. pneumoniae	NA	72407	327	327	87%	9e-85	87.81%	321	NZ_PQTZ01000145.1
10Select seq NZ_JAJAEO010000043.1	Methylophaga pinxianii strain TMB456 NODE_531_length_271_cov_4.453875, whole genome shotgun sequence	Methylophaga pinxianii	NA	2881052	320	320	82%	1e-82	88.59%	369	NZ_JAJAEO010000043.1
11Select seq NZ_VCRO01000027.1	Alteribacter natronophilus strain M30 NODE_57_length_314_cov_0.00930233, whole genome shotgun sequence	Alteribacter natronophilus	NA	2583810	318	318	74%	5e-82	91.06%	314	NZ_VCRO01000027.1
12Select seq NZ_JAWIZS010000078.1	Klebsiella pneumoniae strain PK-15 NODE_81_length_241_cov_3.451220, whole genome shotgun sequence	Klebsiella pneumoniae	NA	573	287	287	68%	2e-72	90.50%	241	NZ_JAWIZS010000078.1
13Select seq NZ_JAJAEO010000029.1	Methylophaga pinxianii strain TMB456 NODE_443_length_229_cov_8.196507, whole genome shotgun sequence	Methylophaga pinxianii	NA	2881052	265	265	74%	7e-66	86.86%	327	NZ_JAJAEO010000029.1
14Select seq NZ_PQTQ01000085.1	Klebsiella pneumoniae subsp. pneumoniae strain DG8154 NODE_87_length_443_cov_114.43, whole genome shotgun sequence	Klebsiella pneumoniae subsp. pneumoniae	NA	72407	252	252	87%	6e-62	82.98%	303	NZ_PQTQ01000085.1
15Select seq NZ_PQTZ01000138.1	Klebsiella pneumoniae subsp. pneumoniae strain DG7190 NODE_140_length_399_cov_151.371, whole genome shotgun sequence	Klebsiella pneumoniae subsp. pneumoniae	NA	72407	246	246	87%	3e-60	82.62%	399	NZ_PQTZ01000138.1
16Select seq NZ_JAJAEO010000022.1	Methylophaga pinxianii strain TMB456 NODE_325_length_200_cov_6.400000, whole genome shotgun sequence	Methylophaga pinxianii	NA	2881052	233	233	66%	2e-56	86.73%	298	NZ_JAJAEO010000022.1
17Select seq NZ_QUSS01000070.1	Enterococcus faecalis strain EFS0021 NODE_77_length_277_cov_1.03604_ID_153, whole genome shotgun sequence	Enterococcus faecalis	NA	1351	231	231	56%	7e-56	89.94%	277	NZ_QUSS01000070.1
18Select seq NZ_JAKJKW010000046.1	Corynebacterium parakroppenstedtii strain MC-19 NODE_56_length_594_cov_3.111753, whole genome shotgun sequence	Corynebacterium parakroppenstedtii	NA	2828363	202	202	87%	6e-47	79.72%	300	NZ_JAKJKW010000046.1
19Select seq NZ_PQTQ01000099.1	Klebsiella pneumoniae subsp. pneumoniae strain DG8154 NODE_104_length_378_cov_81.6813, whole genome shotgun sequence	Klebsiella pneumoniae subsp. pneumoniae	NA	72407	167	167	86%	2e-36	77.70%	321	NZ_PQTQ01000099.1
20Select seq NZ_PQTZ01000116.1	Klebsiella pneumoniae subsp. pneumoniae strain DG7190 NODE_116_length_518_cov_74.1765, whole genome shotgun sequence	Klebsiella pneumoniae subsp. pneumoniae	NA	72407	161	161	86%	1e-34	77.34%	321	NZ_PQTZ01000116.1
21Select seq NZ_VIYC01000159.1	Klebsiella pneumoniae strain AH1689-1 NODE_176_length_413_cov_0.241259, whole genome shotgun sequence	Klebsiella pneumoniae	NA	573	143	143	43%	3e-29	85.61%	211	NZ_VIYC01000159.1
22Select seq NZ_JAWIZS010000074.1	Klebsiella pneumoniae strain PK-15 NODE_76_length_254_cov_1.711864, whole genome shotgun sequence	Klebsiella pneumoniae	NA	573	135	135	25%	6e-27	97.47%	254	NZ_JAWIZS010000074.1
23Select seq NZ_JAWIZR010000121.1	Klebsiella pneumoniae strain PK-14 NODE_123_length_246_cov_2.739645, whole genome shotgun sequence	Klebsiella pneumoniae	NA	573	134	134	24%	2e-26	97.44%	246	NZ_JAWIZR010000121.1
24Select seq NZ_JAWOSW010000064.1	Vibrio sp. Vb2131 NODE_181_length_775_cov_3.989971, whole genome shotgun sequence	Vibrio sp. Vb2131	NA	3074649	126	126	47%	3e-24	82.00%	775	NZ_JAWOSW010000064.1
25Select seq NZ_PQTZ01000143.1	Klebsiella pneumoniae subsp. pneumoniae strain DG7190 NODE_145_length_392_cov_30.6151, whole genome shotgun sequence	Klebsiella pneumoniae subsp. pneumoniae	NA	72407	121	121	68%	2e-22	77.13%	324	NZ_PQTZ01000143.1
26Select seq NZ_SZVE01000183.1	Enterococcus casseliflavus strain OS-61 NODE_309_length_510_cov_0.547344, whole genome shotgun sequence	Enterococcus casseliflavus	NA	37734	115	115	52%	8e-21	79.29%	510	NZ_SZVE01000183.1
27Select seq NZ_JAUQTS010000097.1	Helicobacter pylori strain CR045 cr45_contig_7266, whole genome shotgun sequence	Helicobacter pylori	NA	210	110	110	43%	4e-19	81.43%	491	NZ_JAUQTS010000097.1
28Select seq NZ_JAUQTS010000095.1	Helicobacter pylori strain CR045 cr45_contig_7261, whole genome shotgun sequence	Helicobacter pylori	NA	210	110	110	41%	4e-19	82.09%	509	NZ_JAUQTS010000095.1
29Select seq NZ_JAUQTS010000094.1	Helicobacter pylori strain CR045 cr45_contig_7260, whole genome shotgun sequence	Helicobacter pylori	NA	210	99.0	99.0	41%	8e-16	80.60%	521	NZ_JAUQTS010000094.1

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- Alignment Scores
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- >= 200
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  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
- 29 sequences selected
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Distribution of the top 29 Blast Hits on 29 subject sequences

Query

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Alignments

29 sequences selected
Help

Download GenBank Graphics Next Previous Descriptions

Listeria monocytogenes isolate Listeria monocytogenes strain C7, whole genome shotgun sequence

Sequence ID: NZ_CADFVC010000016.1Length: 463Number of Matches: 1

Range 1: 84 to 408GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
496 bits(268)	2e-135()	307/325(94%)	6/325(1%)	Plus/Plus

Query  1    GACATCGTGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACC  60
            ||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  84   GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGTATCTGTAGGAGACAGAGTCACC  143

Query  61   ATCACTTGCCGGGCAAGTCAGAGCATGAGCAGCTATTTAAATTGGTATCAGCAGAAACCA  120
            |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct  144  ATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTGAATTGGTATCAGCAGAAACCA  203

Query  121  GGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAGAGTGGGGTCCCATCA  180
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  204  GGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCA  263

Query  181  AGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  264  AGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCT  323

Query  241  GAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACTC-TC-----ACTTTCGGC  294
            ||||||||||||||||||||||||||||||||||||||||| | ||     || ||||||
Sbjct  324  GAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCAGGGACGTTCGGC  383

Query  295  GGAGGGACCAAGCTGGAGATCAAAC  319
              |||||||||| |||| |||||||
Sbjct  384  CAAGGGACCAAGGTGGAAATCAAAC  408

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Corynebacterium meridianum strain CCM 8863 GCM70020041_3, whole genome shotgun sequence

Sequence ID: NZ_JAEIOS010000003.1Length: 511Number of Matches: 1

Range 1: 160 to 481GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
481 bits(260)	6e-131()	302/322(94%)	3/322(0%)	Plus/Plus

Query  1    GACATCGTGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACC  60
            ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  160  GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACC  219

Query  61   ATCACTTGCCGGGCAAGTCAGAGCATGAGCAGCTATTTAAATTGGTATCAGCAGAAACCA  120
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  220  ATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCA  279

Query  121  GGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAGAGTGGGGTCCCATCA  180
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  280  GGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCA  339

Query  181  AGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCT  240
            |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  340  AGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCT  399

Query  241  GAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGT-ACTC-TC-ACTTTCGGCGGA  297
            ||||||||||||||||||||||||||||||  | ||||| || | |  || ||||||  |
Sbjct  400  GAAGATTTTGCAACTTACTACTGTCAACAGTATAACAGTTACCCGTGGACGTTCGGCCAA  459

Query  298  GGGACCAAGCTGGAGATCAAAC  319
            ||||||||| |||| |||||||
Sbjct  460  GGGACCAAGGTGGAAATCAAAC  481

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Corynebacterium parakroppenstedtii strain MC-01 NODE_33_length_591_cov_3.435798, whole genome shotgun sequence

Sequence ID: NZ_JAKJKX010000026.1Length: 297Number of Matches: 1

Range 1: 10 to 279GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
405 bits(219)	4e-108()	254/271(94%)	2/271(0%)	Plus/Plus

Query  1    GACATCGTGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACC  60
            ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10   GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACC  69

Query  61   ATCACTTGCCGGGCAAGTCA-GAGCATGAGCAGCTATTTAAATTGGTATCAGCAGAAACC  119
            |||||||||| ||| ||||| || ||| | || |||||||||||||||||||||||||||
Sbjct  70   ATCACTTGCCAGGCGAGTCACGA-CATTAACAACTATTTAAATTGGTATCAGCAGAAACC  128

Query  120  AGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAGAGTGGGGTCCCATC  179
            ||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||||
Sbjct  129  AGGGAAAGCCCCTAAGCTCCTGATCTATGATGCATCCAATTTGCAAAGAGGGGTCCCATC  188

Query  180  AAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACC  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct  189  AAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCC  248

Query  240  TGAAGATTTTGCAACTTACTACTGTCAACAG  270
            |||||||||||||||||| ||||||| ||||
Sbjct  249  TGAAGATTTTGCAACTTATTACTGTCTACAG  279

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Klebsiella pneumoniae strain PK-31 NODE_96_length_496_cov_5.894988, whole genome shotgun sequence

Sequence ID: NZ_JAWIZU010000096.1Length: 496Number of Matches: 1

Range 1: 4 to 325GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
392 bits(212)	3e-104()	288/324(89%)	7/324(2%)	Plus/Minus

Query  1    GACATCGTGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACC  60
            ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  325  GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACC  266

Query  61   ATCACTTGCCGGGCAAGTCAGAGC-ATGAGCAGCTATTTAAATTGGTATCAGCAGAAACC  119
            ||||||||||||||||||| |  | ||    |  || ||||| |||||||||||||||||
Sbjct  265  ATCACTTGCCGGGCAAGTC-GTTCTATTTCTAAATACTTAAACTGGTATCAGCAGAAACC  207

Query  120  AGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAGAGTGGGGTCCCATC  179
            ||||||||||||||||||||||||||||   |||||||  ||||  ||||||||||||||
Sbjct  206  AGGGAAAGCCCCTAAGCTCCTGATCTATAAAGCATCCAAATTGCCAAGTGGGGTCCCATC  147

Query  180  AAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACC  239
            |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  146  AAGGTTCAGTGGTAGTGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACC  87

Query  240  TGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACT---CTCACTTTCGGCGG  296
            |||||||||||||||||||||||||||||||  ||  |  ||    ||||||||||||||
Sbjct  86   TGAAGATTTTGCAACTTACTACTGTCAACAGTCTTCTAAAACCCCACTCACTTTCGGCGG  27

Query  297  AGGGAC-CAAGCTGGAGATCAAAC  319
            |||||| | | |||||||||||||
Sbjct  26   AGGGACACGA-CTGGAGATCAAAC  4

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Stenotrophomonas rhizophila strain GN_RF3 N_65_length_622, whole genome shotgun sequence

Sequence ID: NZ_JADCLO010000057.1Length: 622Number of Matches: 1

Range 1: 248 to 518GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
374 bits(202)	1e-98()	248/271(92%)	0/271(0%)	Plus/Plus

Query  11   TGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCC  70
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  248  TGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGAC  307

Query  71   GGGCAAGTCAGAGCATGAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCC  130
            ||||||||||| |||| |||||   ||||   |||||||||||||||||||||||||| |
Sbjct  308  GGGCAAGTCAGGGCATTAGCAGTGCTTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCTC  367

Query  131  CTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAGAGTGGGGTCCCATCAAGGTTCAGTG  190
            ||||||||||||||||||||||||||||| |||| |||||| | || ||  |||||||||
Sbjct  368  CTAAGCTCCTGATCTATGCTGCATCCAGTCTGCAAAGTGGGATTCCCTCTCGGTTCAGTG  427

Query  191  GCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTG  250
             |||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||
Sbjct  428  ACAGTGGATCTGGGACAGATTACACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTG  487

Query  251  CAACTTACTACTGTCAACAGAGTTACAGTAC  281
            ||||||| ||||||||||||||| |||||||
Sbjct  488  CAACTTATTACTGTCAACAGAGTGACAGTAC  518

Taxonomy

29 sequences selected
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Lineage

Lineage Report
Organism	Blast Name	Score	Number of Hits	Description
Bacteria	bacteria		29
.Bacillati	bacteria		8
..Bacilli	firmicutes		4
...Bacillales	firmicutes		2
....Listeria monocytogenes	firmicutes	496	1	Listeria monocytogenes hits
....Alteribacter natronophilus	firmicutes	318	1	Alteribacter natronophilus hits
...Enterococcus faecalis	firmicutes	231	1	Enterococcus faecalis hits
...Enterococcus casseliflavus	firmicutes	115	1	Enterococcus casseliflavus hits
..Corynebacterium meridianum	high G+C Gram-positive bacteria	481	1	Corynebacterium meridianum hits
..Corynebacterium parakroppenstedtii	high G+C Gram-positive bacteria	405	2	Corynebacterium parakroppenstedtii hits
..Corynebacterium pyruviciproducens	high G+C Gram-positive bacteria	337	1	Corynebacterium pyruviciproducens hits
.Klebsiella pneumoniae	enterobacteria	392	5	Klebsiella pneumoniae hits
.Stenotrophomonas rhizophila	g-proteobacteria	374	1	Stenotrophomonas rhizophila hits
.Rhodobacter flavimaris	a-proteobacteria	353	1	Rhodobacter flavimaris hits
.Campylobacter fetus subsp. venerealis	e-proteobacteria	333	1	Campylobacter fetus subsp. venerealis hits
.Klebsiella pneumoniae subsp. pneumoniae	enterobacteria	327	6	Klebsiella pneumoniae subsp. pneumoniae hits
.Methylophaga pinxianii	g-proteobacteria	320	3	Methylophaga pinxianii hits
.Vibrio sp. Vb2131	g-proteobacteria	126	1	Vibrio sp. Vb2131 hits
.Helicobacter pylori	e-proteobacteria	110	3	Helicobacter pylori hits

Organism

Organism Report
Description	Score	E value	Accession
Listeria monocytogenes [firmicutes] Next Previous First
Listeria monocytogenes isolate Listeria monocytogenes strain C7, whole genome shotgun sequence	496	2e-135	NZ_CADFVC010000016
Corynebacterium meridianum [high G+C Gram-positive bacteria] Next Previous First
Corynebacterium meridianum strain CCM 8863 GCM70020041_3, whole genome shotgun sequence	481	6e-131	NZ_JAEIOS010000003
Corynebacterium parakroppenstedtii [high G+C Gram-positive bacteria] Next Previous First
Corynebacterium parakroppenstedtii strain MC-01 NODE_33_length_591_cov_3.435798, whole genome shotgun sequence	405	4e-108	NZ_JAKJKX010000026
Corynebacterium parakroppenstedtii strain MC-19 NODE_56_length_594_cov_3.111753, whole genome shotgun sequence	202	6e-47	NZ_JAKJKW010000046
Klebsiella pneumoniae [enterobacteria] Next Previous First
Klebsiella pneumoniae strain PK-31 NODE_96_length_496_cov_5.894988, whole genome shotgun sequence	392	3e-104	NZ_JAWIZU010000096
Klebsiella pneumoniae strain PK-15 NODE_81_length_241_cov_3.451220, whole genome shotgun sequence	287	2e-72	NZ_JAWIZS010000078
Klebsiella pneumoniae strain AH1689-1 NODE_176_length_413_cov_0.241259, whole genome shotgun sequence	143	3e-29	NZ_VIYC01000159
Klebsiella pneumoniae strain PK-15 NODE_76_length_254_cov_1.711864, whole genome shotgun sequence	135	6e-27	NZ_JAWIZS010000074
Klebsiella pneumoniae strain PK-14 NODE_123_length_246_cov_2.739645, whole genome shotgun sequence	134	2e-26	NZ_JAWIZR010000121
Stenotrophomonas rhizophila [g-proteobacteria] Next Previous First
Stenotrophomonas rhizophila strain GN_RF3 N_65_length_622, whole genome shotgun sequence	374	1e-98	NZ_JADCLO010000057
Rhodobacter flavimaris [a-proteobacteria] Next Previous First
Rhodobacter flavimaris strain WL0062 NODE_211_length_316_cov_0.714286, whole genome shotgun sequence	353	1e-92	NZ_JAJUOS010000058
Corynebacterium pyruviciproducens [high G+C Gram-positive bacteria] Next Previous First
Corynebacterium pyruviciproducens strain WYJY-01 Scaffold65, whole genome shotgun sequence	337	1e-87	NZ_JAGJTU010000065
Campylobacter fetus subsp. venerealis [e-proteobacteria] Next Previous First
Campylobacter fetus subsp. venerealis strain SA21-221439 UK9_contig_70, whole genome shotgun sequence	333	2e-86	NZ_JAENPU010000069
Klebsiella pneumoniae subsp. pneumoniae [enterobacteria] Next Previous First
Klebsiella pneumoniae subsp. pneumoniae strain DG7190 NODE_147_length_389_cov_32.7786, whole genome shotgun sequence	327	9e-85	NZ_PQTZ01000145
Klebsiella pneumoniae subsp. pneumoniae strain DG8154 NODE_87_length_443_cov_114.43, whole genome shotgun sequence	252	6e-62	NZ_PQTQ01000085
Klebsiella pneumoniae subsp. pneumoniae strain DG7190 NODE_140_length_399_cov_151.371, whole genome shotgun sequence	246	3e-60	NZ_PQTZ01000138
Klebsiella pneumoniae subsp. pneumoniae strain DG8154 NODE_104_length_378_cov_81.6813, whole genome shotgun sequence	167	2e-36	NZ_PQTQ01000099
Klebsiella pneumoniae subsp. pneumoniae strain DG7190 NODE_116_length_518_cov_74.1765, whole genome shotgun sequence	161	1e-34	NZ_PQTZ01000116
Klebsiella pneumoniae subsp. pneumoniae strain DG7190 NODE_145_length_392_cov_30.6151, whole genome shotgun sequence	121	2e-22	NZ_PQTZ01000143
Methylophaga pinxianii [g-proteobacteria] Next Previous First
Methylophaga pinxianii strain TMB456 NODE_531_length_271_cov_4.453875, whole genome shotgun sequence	320	1e-82	NZ_JAJAEO010000043
Methylophaga pinxianii strain TMB456 NODE_443_length_229_cov_8.196507, whole genome shotgun sequence	265	7e-66	NZ_JAJAEO010000029
Methylophaga pinxianii strain TMB456 NODE_325_length_200_cov_6.400000, whole genome shotgun sequence	233	2e-56	NZ_JAJAEO010000022
Alteribacter natronophilus [firmicutes] Next Previous First
Alteribacter natronophilus strain M30 NODE_57_length_314_cov_0.00930233, whole genome shotgun sequence	318	5e-82	NZ_VCRO01000027
Enterococcus faecalis [firmicutes] Next Previous First
Enterococcus faecalis strain EFS0021 NODE_77_length_277_cov_1.03604_ID_153, whole genome shotgun sequence	231	7e-56	NZ_QUSS01000070
Vibrio sp. Vb2131 [g-proteobacteria] Next Previous First
Vibrio sp. Vb2131 NODE_181_length_775_cov_3.989971, whole genome shotgun sequence	126	3e-24	NZ_JAWOSW010000064
Enterococcus casseliflavus [firmicutes] Next Previous First
Enterococcus casseliflavus strain OS-61 NODE_309_length_510_cov_0.547344, whole genome shotgun sequence	115	8e-21	NZ_SZVE01000183
Helicobacter pylori [e-proteobacteria] Next Previous First
Helicobacter pylori strain CR045 cr45_contig_7266, whole genome shotgun sequence	110	4e-19	NZ_JAUQTS010000097
Helicobacter pylori strain CR045 cr45_contig_7261, whole genome shotgun sequence	110	4e-19	NZ_JAUQTS010000095
Helicobacter pylori strain CR045 cr45_contig_7260, whole genome shotgun sequence	99.0	8e-16	NZ_JAUQTS010000094

Taxonomy

Taxonomy Report
Taxonomy	Number of hits	Number of Organisms	Description
Bacteria	29	15
. Bacillati	8	7
.. Bacilli	4	4
... Bacillales	2	2
.... Listeria monocytogenes	1	1	Listeria monocytogenes hits
.... Alteribacter natronophilus	1	1	Alteribacter natronophilus hits
... Enterococcus	2	2
.... Enterococcus faecalis	1	1	Enterococcus faecalis hits
.... Enterococcus casseliflavus	1	1	Enterococcus casseliflavus hits
.. Corynebacterium	4	3
... Corynebacterium meridianum	1	1	Corynebacterium meridianum hits
... Corynebacterium parakroppenstedtii	2	1	Corynebacterium parakroppenstedtii hits
... Corynebacterium pyruviciproducens	1	1	Corynebacterium pyruviciproducens hits
. Pseudomonadati	21	8
.. Pseudomonadota	17	6
... Gammaproteobacteria	16	5
.... Klebsiella pneumoniae complex	11	2
..... Klebsiella pneumoniae	5	2	Klebsiella pneumoniae hits
...... Klebsiella pneumoniae subsp. pneumoniae	6	1	Klebsiella pneumoniae subsp. pneumoniae hits
.... Stenotrophomonas rhizophila	1	1	Stenotrophomonas rhizophila hits
.... Methylophaga pinxianii	3	1	Methylophaga pinxianii hits
.... Vibrio sp. Vb2131	1	1	Vibrio sp. Vb2131 hits
... Rhodobacter flavimaris	1	1	Rhodobacter flavimaris hits
.. Campylobacterales	4	2
... Campylobacter fetus subsp. venerealis	1	1	Campylobacter fetus subsp. venerealis hits
... Helicobacter pylori	3	1	Helicobacter pylori hits

Filter Results

Sequences producing significant alignments