LOCUS       PQTQ01000091             335 bp    DNA     linear   BCT 14-JUN-2018
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain DG8154
            NODE_93_length_401_cov_42.3175, whole genome shotgun sequence.
ACCESSION   PQTQ01000091 PQTQ01000000
VERSION     PQTQ01000091.1
DBLINK      BioProject: PRJNA431724
            BioSample: SAMN08399028
KEYWORDS    WGS.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group;
            Klebsiella; Klebsiella pneumoniae complex.
REFERENCE   1  (bases 1 to 335)
  AUTHORS   Arena,F., Vannetti,F., Di Pilato,V., Fabbri,L., Colavecchio,O.L.,
            Giani,T., Carli,V., Diverio,M., Marraccini,C., Pupillo,R.,
            Macchi,C., Converti,F. and Rossolini,G.M.
  TITLE     Diversity of carbapenemase-producing Enterobacteriaceae
            epidemiology in long-term acute care rehabilitation settings and
            evaluation of an intervention bundle
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 335)
  AUTHORS   Di Pilato,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-FEB-2018) Department of Experimental and Clinical
            Medicine, University of Florence, Largo Brambilla 3, Florence
            50134, Italy
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 03.11
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 02/01/2018 20:30:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.3
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,804
            CDS (total)                       :: 5,694
            Genes (coding)                    :: 5,502
            CDS (coding)                      :: 5,502
            Genes (RNA)                       :: 110
            rRNAs                             :: 8, 5, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1 (5S, 16S)
            partial rRNAs                     :: 1, 4, 7 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 192
            Pseudo Genes (ambiguous residues) :: 0 of 192
            Pseudo Genes (frameshifted)       :: 91 of 192
            Pseudo Genes (incomplete)         :: 84 of 192
            Pseudo Genes (internal stop)      :: 59 of 192
            Pseudo Genes (multiple problems)  :: 37 of 192
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /submitter_seqid="NODE_93_length_401_cov_42.3175"
                     /strain="DG8154"
                     /isolation_source="Rectal swab"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /geo_loc_name="Italy: Florence"
                     /collection_date="Dec-2016"
                     /collected_by="Don Carlo Gnocchi Foundation, Italy"
     gene            <1..>335
                     /locus_tag="C3J77_28970"
     CDS             <1..>335
                     /locus_tag="C3J77_28970"
                     /inference="COORDINATES: protein motif:HMM:PF07686.15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="PZA74675.1"
                     /translation="TGERVTLSCRARQSFPSDHLAWYQQRPGQAPRLLIYGASTRATG
                     IPDRFSGRRSGTDFTLTISGLEPTDFAMYYCQQYGGSSGYTFGQGTKIEMKRTVAAPS
                     VFICQKEIG"
ORIGIN      
        1 ggacagggga aagagtcacc ctctcctgca gggctcgtca gagttttccc agcgaccact
       61 tagcgtggta ccagcagaga cctggccagg ctcccaggct cctcatctat ggtgcatcga
      121 ccagggccac tggcatccca gacaggttca gtggcaggcg gtctgggaca gacttcactc
      181 tcaccatcag cggtctggag cccacagatt ttgcaatgta ttactgtcag cagtatggtg
      241 gttcctcggg gtacactttt ggccagggga ccaagattga gatgaaacga actgtggctg
      301 caccatctgt cttcatctgt cagaaagaga tcgga
//