LOCUS       PQTZ01000131             333 bp    DNA     linear   BCT 14-JUN-2018
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain DG7190
            NODE_132_length_426_cov_41.1854, whole genome shotgun sequence.
ACCESSION   PQTZ01000131 PQTZ01000000
VERSION     PQTZ01000131.1
DBLINK      BioProject: PRJNA431724
            BioSample: SAMN08399048
KEYWORDS    WGS.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group;
            Klebsiella; Klebsiella pneumoniae complex.
REFERENCE   1  (bases 1 to 333)
  AUTHORS   Arena,F., Vannetti,F., Di Pilato,V., Fabbri,L., Colavecchio,O.L.,
            Giani,T., Carli,V., Diverio,M., Marraccini,C., Pupillo,R.,
            Macchi,C., Converti,F. and Rossolini,G.M.
  TITLE     Diversity of carbapenemase-producing Enterobacteriaceae
            epidemiology in long-term acute care rehabilitation settings and
            evaluation of an intervention bundle
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 333)
  AUTHORS   Di Pilato,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-FEB-2018) Department of Experimental and Clinical
            Medicine, University of Florence, Largo Brambilla 3, Florence
            50134, Italy
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 03.11
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 02/01/2018 21:46:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.3
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,913
            CDS (total)                       :: 5,802
            Genes (coding)                    :: 5,646
            CDS (coding)                      :: 5,646
            Genes (RNA)                       :: 111
            rRNAs                             :: 10, 5, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 8 (5S)
            partial rRNAs                     :: 2, 5, 4 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 156
            Pseudo Genes (ambiguous residues) :: 0 of 156
            Pseudo Genes (frameshifted)       :: 81 of 156
            Pseudo Genes (incomplete)         :: 79 of 156
            Pseudo Genes (internal stop)      :: 34 of 156
            Pseudo Genes (multiple problems)  :: 35 of 156
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..333
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /submitter_seqid="NODE_132_length_426_cov_41.1854"
                     /strain="DG7190"
                     /isolation_source="Rectal swab"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /geo_loc_name="Italy: Florence"
                     /collection_date="Sep-2016"
                     /collected_by="Don Carlo Gnocchi Foundation, Italy"
     gene            complement(5..>333)
                     /locus_tag="C3J97_29450"
     CDS             complement(5..>333)
                     /locus_tag="C3J97_29450"
                     /inference="COORDINATES: protein motif:HMM:PF07686.15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="PZB08581.1"
                     /translation="PGERATLSCRASQTINSAYIAWYQQKPGQAPRLLIHGASSRATD
                     IPERFTGSVSGSVSGTDFILTITRLEPEDFAVYFCQQCGRSPYTFGQGTRLEIKRTVA
                     APSVFI"
ORIGIN      
        1 cgctctagat gaagacagat ggtgcagcca cagttcgttt gatctccaac ctggtcccct
       61 ggccaaaagt gtagggtgac cgaccacact gctgacagaa atacactgca aaatcttcag
      121 gctccagtct ggtgatggtg agaatgaagt ctgtcccaga aacactccca gaaacactgc
      181 cagtgaacct ctctgggatg tccgtggccc tgctggacgc accatggatg aggagcctgg
      241 gcgcctggcc aggtttctgc tggtaccagg ctatgtaggc gctgttaata gtctgactgg
      301 ccctgcagga gagggtggct ctttcccctg gac
//