- 29 sequences selected
- Job Title
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ref|NZ_JALJSU010000077.1|
- RID
- U9XR1C3V013 Search expires on 02-08 00:52 am
- Program
- BLASTN
Help
Program version: BLASTN 2.16.1+
- Database
-
nt
-
See details
Title:Nucleotide collection (nt)
Description:The nucleotide collection consists of GenBank+EMBL+DDBJ+PDB+RefSeq sequences, but excludes EST, STS, GSS, WGS, TSA, patent sequences as well as phase 0, 1, and 2 HTGS sequences and sequences longer than 100Mb. The database is non-redundant. Identical sequences have been merged into one entry, while preserving the accession, GI, title and taxonomy information for each entry.
Molecule Type:mixed DNA
Update date:2025/02/05
Number of sequences:112275153
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See details
- Query ID
- NZ_JALJSU010000077.1 NZ_JALJSU010000077.1
- Description
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Escherichia coli strain SE51T NODE_84_length_757_cov_109.005882, whole genome shotgun sequence
- Molecule type
- dna
- Query Length
- 757
- Other reports
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Distance tree of results
MSA viewer
Help
Reports are generated on using all sequences producing significant alignments. To generate reports on a subset of sequences, use the report links in the Descriptions tab while selecting specific sequences.
Filter Results
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Sequences producing significant alignments
- Help
Subject sequences can be removed or added from within the Descriptions tab and the selections will carry through to the other tabbed views. Use the formats in Download to save data for selected sequences. Manage Columns adds and subtracts data columns from the Descriptions table. Use the click outs to see the selected results in GenBank , Graphical Sequence Viewer , BLAST Tree View , COBALT multiple sequence alignment .
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- hover to see the title
- click to show alignments
- Alignment Scores
- < 40
- 40 - 50
- 50 - 80
- 80 - 200
- >= 200
- Help
The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
- 29 sequences selected
- Help
To select sequences, go to the Descriptions tab
Distribution of the top 40 Blast Hits on 29 subject sequences
Query1150300450600750Homo sapiens isolate CV47 anti-SARS-CoV-2 immunoglobuli..Score:104 Evalue:6.6e-17Accession:MT462569.1Homo sapiens clone 315-02-1A05K immunoglobulin kappa ch..Score:84 Evalue:8.6e-11Accession:MF289025.1Homo sapiens IGL c2197_light_IGKV1-39_IGKJ1 mRNA, parti..Score:73 Evalue:1.9e-07Accession:MN278637.1Homo sapiens IGL c1177_light_IGKV1-39_IGKJ1 mRNA, parti..Score:73 Evalue:1.9e-07Accession:MN277617.1 -
- Help
- Alignment view: Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
- CDS feature: Show annotated coding region and translation. more...
- Line length: Number of letters to show on one line in an alignment.
- 29 sequences selected
- Help
To select sequences, go to the Descriptions tab
Loading alignment... for sequences gi|1842744635,gi|1229405054,gi|317185366,gi|317185363,gi|1435072409 Reading indexes 1-5 -
Reports
- 29 sequences selected
- Help
To select sequences, go to the Descriptions tab