(cache)NCBI Blast:gb|JACGFQ010000331.1|

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Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	100
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Feb 2, 2025 4:42 AM
Number of letters	2,688,129,930,104
Number of sequences	112,177,963
Entrez query	Includes: Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	37
Effective length of query	245
Effective length of database	2683979345473
Effective search space	657574939640885
Effective search space used	657574939640885

Job Title

gb|JACGFQ010000331.1| ...

RID

U1H5GCP8013 Search expires on 02-04 20:29 pm

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Results for

Program

BLASTN

Citation

Database

See details

Title:Nucleotide collection (nt)
Description:The nucleotide collection consists of GenBank+EMBL+DDBJ+PDB+RefSeq sequences, but excludes EST, STS, GSS, WGS, TSA, patent sequences as well as phase 0, 1, and 2 HTGS sequences and sequences longer than 100Mb. The database is non-redundant. Identical sequences have been merged into one entry, while preserving the accession, GI, title and taxonomy information for each entry.
Molecule Type:mixed DNA
Update date:2025/02/02
Number of sequences:112083753

Query ID

JACGFQ010000331.1

Description

Escherichia coli strain H2F9R NODE_451_length_282_cov_0.729032, whole genome shotgun sequence ...

Molecule type

dna

Query Length

282

Other reports

Distance tree of results MSA viewer

Filter Results

Descriptions

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6 sequences selected

, Reading indexes 1-5, displaying indexes 1-5

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq EU127831.1	Synthetic construct major capsid protein L1 gene, complete cds	synthetic construct	NA	32630	233	233	96%	3e-56	82.35%	1515	EU127831.1
2Select seq FN178626.1	Synthetic construct for Human papillomavirus type 58 major capsid protein L1 gene	synthetic construct	NA	32630	224	224	92%	2e-53	82.31%	1497	FN178626.1
3Select seq AJ313179.1	Synthetic construct human papillomavirus type 16 synthetic h16L1 gene for HPV 16 L1 major capsid protein, genomic RNA	synthetic construct	NA	32630	217	217	95%	3e-51	81.48%	1518	AJ313179.1
4Select seq FJ615305.1	Synthetic construct HPV-type 58 L1 protein gene, complete cds	synthetic construct	NA	32630	202	202	92%	8e-47	80.77%	1575	FJ615305.1
5Select seq DQ067889.1	Synthetic construct HPV-16 L1 gene, complete cds	synthetic construct	NA	32630	202	202	93%	8e-47	80.68%	1518	DQ067889.1
6Select seq MT813123.1	Synthetic construct Gp41/large envelope fusion surface protein 1 gene, partial cds	synthetic construct	NA	32630	141	141	93%	2e-28	76.60%	2712	MT813123.1

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- Show Conserved Domains
- Alignment Scores
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- >= 200
- Help
  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
- 6 sequences selected
- Help
Distribution of the top 6 Blast Hits on 6 subject sequences

Query

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Alignments

6 sequences selected
Help

Download GenBank Graphics Next Previous Descriptions

Synthetic construct major capsid protein L1 gene, complete cds

Sequence ID: EU127831.1Length: 1515Number of Matches: 1

Range 1: 542 to 811GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
233 bits(126)	3e-56()	224/272(82%)	4/272(1%)	Plus/Plus

Query  4    TCACCACCGGCGACTGCCCCCCTCTGGCCCTGATCAACACCCCCATCGAGGACGGCGACA  63
            ||||| | |||||||||||||| ||||  ||||  |||| |   ||| ||||||||||||
Sbjct  542  TCACCCCTGGCGACTGCCCCCCACTGGAGCTGAAGAACAGCGTGATCCAGGACGGCGACA  601

Query  64   TGATCGACACCGGCTTCGGCGCCATGGACTTCAAGGTGCTGCAGGAAAGCAAGGCCGAGG  123
            || | ||||||||||||||||||||||||||||  |  |||||||| | ||||  | | |
Sbjct  602  TGGTGGACACCGGCTTCGGCGCCATGGACTTCACCGCCCTGCAGGACACCAAGAGCAACG  661

Query  124  TCCCCCTGGACATCGTGCAG-AGCACCTGCAAGTACCCCGACTACCTGAAGATGAGCGCC  182
            | |||||||||||| ||||  |||| ||||||||||||||||||||||||||||   |||
Sbjct  662  TGCCCCTGGACATC-TGCAACAGCATCTGCAAGTACCCCGACTACCTGAAGATGGTGGCC  720

Query  183  GACGCC-TACGGCGACAGCATGTGGTTCTACCTGCGGCGGGAGCAGCTGTTCGCCCGGCA  241
            || ||| |||||||| | | |||  ||||||||||||||||||||| ||||||  |||||
Sbjct  721  GA-GCCTTACGGCGATACCCTGTTCTTCTACCTGCGGCGGGAGCAGATGTTCGTGCGGCA  779

Query  242  CTACTTCAGCAGAGCCGGCAAAGTGGGCGAGA  273
            || ||||| ||||  |||||  ||||||||||
Sbjct  780  CTTCTTCAACAGAAGCGGCACCGTGGGCGAGA  811

Download GenBank Graphics Next Previous Descriptions

Synthetic construct for Human papillomavirus type 58 major capsid protein L1 gene

Sequence ID: FN178626.1Length: 1497Number of Matches: 1

Range 1: 549 to 807GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
224 bits(121)	2e-53()	214/260(82%)	2/260(0%)	Plus/Plus

Query  14   CGACTGCCCCCCTCTGGCCCTGATCAACACCCCCATCGAGGACGGCGACATGATCGACAC  73
            |||||||||||||||||  ||| |||||| |  ||||||||||||||||||| | |||||
Sbjct  549  CGACTGCCCCCCTCTGGAACTGTTCAACAGCATCATCGAGGACGGCGACATGGTGGACAC  608

Query  74   CGGCTTCGGCGCCATGGACTTCAAGGTGCTGCAGGAAAGCAAGGCCGAGGTCCCCCTGGA  133
            ||||||||||  ||||||||||      |||||||  | ||||  ||| || ||| | ||
Sbjct  609  CGGCTTCGGCTGCATGGACTTCGGCACCCTGCAGGCCAACAAGAGCGACGTGCCCATCGA  668

Query  134  CATCGTGC-AGAGCACCTGCAAGTACCCCGACTACCTGAAGATGAGCGCCGACGCCTACG  192
            |||| ||| | |||||||||||||||||||||||||||||||||  |  |||  ||||||
Sbjct  669  CATC-TGCAACAGCACCTGCAAGTACCCCGACTACCTGAAGATGGCCAGCGAGCCCTACG  727

Query  193  GCGACAGCATGTGGTTCTACCTGCGGCGGGAGCAGCTGTTCGCCCGGCACTACTTCAGCA  252
            |||||||| |||  |||| |||||||||||||||| ||||||  ||||||| ||||| ||
Sbjct  728  GCGACAGCCTGTTCTTCTTCCTGCGGCGGGAGCAGATGTTCGTGCGGCACTTCTTCAACA  787

Query  253  GAGCCGGCAAAGTGGGCGAG  272
            | ||||||||  ||||||||
Sbjct  788  GGGCCGGCAAGCTGGGCGAG  807

Download GenBank Graphics Next Previous Descriptions

Synthetic construct human papillomavirus type 16 synthetic h16L1 gene for HPV 16 L1 major capsid protein, genomic RNA

Sequence ID: AJ313179.1Length: 1518Number of Matches: 1

Range 1: 542 to 808GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
217 bits(117)	3e-51()	220/270(81%)	5/270(1%)	Plus/Plus

Query  6    ACCACCGGCGACTGCCCCCCTCTGGCCCTGATCAACACCCCCATCGAGGACGGCGACATG  65
            ||| |||||||||||||||| ||||  ||||||||||||   ||| ||||||||||||||
Sbjct  542  ACC-CCGGCGACTGCCCCCCCCTGGAGCTGATCAACACCGTGATCCAGGACGGCGACATG  600

Query  66   ATCGACACCGGCTTCGGCGCCATGGACTTCAAGGTGCTGCAGGAAAGCAAGGCCGAGGTC  125
             | ||||||||||||||||||||||||||||     |||||||  | ||||  |||||| 
Sbjct  601  GTGGACACCGGCTTCGGCGCCATGGACTTCACCACCCTGCAGGCCAACAAGAGCGAGGTG  660

Query  126  CCCCTGGACATCGTGCAG-AGCACCTGCAAGTACCCCGACTACCTGAAGATGA-GCGCCG  183
            |||||||||||| ||||  |||| ||||||||||||||||||| | ||||||  | || |
Sbjct  661  CCCCTGGACATC-TGCACCAGCATCTGCAAGTACCCCGACTACATCAAGATGGTGAGC-G  718

Query  184  ACGCCTACGGCGACAGCATGTGGTTCTACCTGCGGCGGGAGCAGCTGTTCGCCCGGCACT  243
            |  |||||||||||||| |||  ||||||||| || |||||||| ||||||   ||||| 
Sbjct  719  AGCCCTACGGCGACAGCCTGTTCTTCTACCTGAGGAGGGAGCAGATGTTCGTGAGGCACC  778

Query  244  ACTTCAGCAGAGCCGGCAAAGTGGGCGAGA  273
              |||| ||| ||||||   ||||||||||
Sbjct  779  TGTTCAACAGGGCCGGCGCCGTGGGCGAGA  808

Download GenBank Graphics Next Previous Descriptions

Synthetic construct HPV-type 58 L1 protein gene, complete cds

Sequence ID: FJ615305.1Length: 1575Number of Matches: 1

Range 1: 627 to 885GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
202 bits(109)	8e-47()	210/260(81%)	2/260(0%)	Plus/Plus

Query  14   CGACTGCCCCCCTCTGGCCCTGATCAACACCCCCATCGAGGACGGCGACATGATCGACAC  73
            |||||||||||| ||||  ||| |||||| |  ||||||||||||||||||| | |||||
Sbjct  627  CGACTGCCCCCCCCTGGAGCTGTTCAACAGCATCATCGAGGACGGCGACATGGTGGACAC  686

Query  74   CGGCTTCGGCGCCATGGACTTCAAGGTGCTGCAGGAAAGCAAGGCCGAGGTCCCCCTGGA  133
            ||||||||||  ||||||||||      |||||||  | ||||  ||| || ||| | ||
Sbjct  687  CGGCTTCGGCTGCATGGACTTCGGCACCCTGCAGGCCAACAAGAGCGACGTGCCCATCGA  746

Query  134  CATCGTGC-AGAGCACCTGCAAGTACCCCGACTACCTGAAGATGAGCGCCGACGCCTACG  192
            |||| ||| | |||||||||||||||||||||||||||||||||  |  |||  ||||||
Sbjct  747  CATC-TGCAACAGCACCTGCAAGTACCCCGACTACCTGAAGATGGCCAGCGAGCCCTACG  805

Query  193  GCGACAGCATGTGGTTCTACCTGCGGCGGGAGCAGCTGTTCGCCCGGCACTACTTCAGCA  252
            |||||||| |||  |||| |||| || |||||||| ||||||   |||||| ||||| ||
Sbjct  806  GCGACAGCCTGTTCTTCTTCCTGAGGAGGGAGCAGATGTTCGTGAGGCACTTCTTCAACA  865

Query  253  GAGCCGGCAAAGTGGGCGAG  272
            | ||||||||  ||||||||
Sbjct  866  GGGCCGGCAAGCTGGGCGAG  885

Download GenBank Graphics Next Previous Descriptions

Synthetic construct HPV-16 L1 gene, complete cds

Sequence ID: DQ067889.1Length: 1518Number of Matches: 1

Range 1: 547 to 808GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
202 bits(109)	8e-47()	213/264(81%)	4/264(1%)	Plus/Plus

Query  12   GGCGACTGCCCCCCTCTGGCCCTGATCAACACCCCCATCGAGGACGGCGACATGATCGAC  71
            |||||||| || || ||||  || |||||||||   ||| |||||||||||||| | |||
Sbjct  547  GGCGACTGTCCTCCCCTGGAACTCATCAACACCGTGATCCAGGACGGCGACATGGTGGAC  606

Query  72   ACCGGCTTCGGCGCCATGGACTTCAAGGTGCTGCAGGAAAGCAAGGCCGAGGTCCCCCTG  131
            |||||||||||||||||||||||||     || ||||  |  |||  |||||| ||||||
Sbjct  607  ACCGGCTTCGGCGCCATGGACTTCACCACCCTCCAGGCCAATAAGAGCGAGGTGCCCCTG  666

Query  132  GACATCGTGCAG-AGCACCTGCAAGTACCCCGACTACCTGAAGATGA-GCGCCGACGCCT  189
            |||||| ||||  |||| ||||||||||||||||||| | ||||||  | || ||  |||
Sbjct  667  GACATC-TGCACCAGCATCTGCAAGTACCCCGACTACATCAAGATGGTGAGC-GAGCCCT  724

Query  190  ACGGCGACAGCATGTGGTTCTACCTGCGGCGGGAGCAGCTGTTCGCCCGGCACTACTTCA  249
            ||||||| ||| |||  ||||||||||||||||||||| ||||||  ||||||   ||||
Sbjct  725  ACGGCGATAGCCTGTTCTTCTACCTGCGGCGGGAGCAGATGTTCGTGCGGCACCTGTTCA  784

Query  250  GCAGAGCCGGCAAAGTGGGCGAGA  273
             ||||||||||   ||||||||||
Sbjct  785  ACAGAGCCGGCGCCGTGGGCGAGA  808

Taxonomy

6 sequences selected
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Lineage

Lineage Report
Organism	Blast Name	Score	Number of Hits	Description
synthetic construct	other sequences	233	6	synthetic construct hits

Organism

Organism Report
Description	Score	E value	Accession
synthetic construct [other sequences] Next Previous First
Synthetic construct major capsid protein L1 gene, complete cds	233	3e-56	EU127831
Synthetic construct for Human papillomavirus type 58 major capsid protein L1 gene	224	2e-53	FN178626
Synthetic construct human papillomavirus type 16 synthetic h16L1 gene for HPV 16 L1 major capsid protein, genomic RNA	217	3e-51	AJ313179
Synthetic construct HPV-type 58 L1 protein gene, complete cds	202	8e-47	FJ615305
Synthetic construct HPV-16 L1 gene, complete cds	202	8e-47	DQ067889
Synthetic construct Gp41/large envelope fusion surface protein 1 gene, partial cds	141	2e-28	MT813123

Filter Results

Sequences producing significant alignments