(cache)NCBI Blast:tpg|HAJ5915991.1|

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Search Parameters
Search parameter name	Search parameter value
Program	blastp
Word size	5
Expect value	0.05
Hitlist size	250
Gapcosts	11,1
Matrix	BLOSUM62
Filter string	F
Genetic Code	1
Window Size	40
Threshold	0
Composition-based stats	2

Database
Database parameter name	Database parameter value
Posted date	Jan 15, 2025 3:54 AM
Number of letters	145,662,075,101
Number of sequences	379,168,219
Entrez query	Includes: Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	0.321921	0.267
K	0.142344	0.041
H	0.400818	0.14
Alpha	0.7916	1.9
Alpha_v	4.96466	42.6028
Sigma		43.6362

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Job Title

tpg|HAJ5915991.1| ...

RID

TFT7P7RD013 Search expires on 01-29 02:56 am

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Results for

Program

BLASTP

Citation
Reference
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference - compositional score matrix adjustment
Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Database

refseq_protein

See details

Query ID

HAJ5915991.1

Description

Vpu, partial [Escherichia coli] ...

Molecule type

amino acid

Query Length

Other reports

Distance tree of results Multiple alignment MSA viewer

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Descriptions

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4 sequences selected

, Reading indexes 1-4, displaying indexes 1-4

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq ref\|WP_122649141.1\|	Vpu [Burkholderia pseudomallei]	Burkholderia pseudomallei	NA	28450	107	107	100%	2e-28	84.38%	86	WP_122649141.1
2Select seq ref\|WP_117083536.1\|	Vpu [Klebsiella pneumoniae]	Klebsiella pneumoniae	NA	573	103	103	100%	5e-27	79.69%	86	WP_117083536.1
3Select seq ref\|WP_117081691.1\|	Vpu [Klebsiella pneumoniae]	Klebsiella pneumoniae	NA	573	101	101	95%	2e-26	80.33%	86	WP_117081691.1
4Select seq ref\|NP_057855.1\|	Vpu [Human immunodeficiency virus 1]	Human immunodeficiency virus 1	NA	11676	64.7	64.7	92%	9e-12	60.00%	82	NP_057855.1

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- Show Conserved Domains
- Alignment Scores
- < 40
- 40 - 50
- 50 - 80
- 80 - 200
- >= 200
- Help
  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
- 4 sequences selected
- Help
Putative conserved domains have been detected, click on the image below for detailed results.

Distribution of the top 4 Blast Hits on 4 subject sequences

Query

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- Alignment view
- CDS feature
- Line length:
- Help
  Alignment view: Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
  
  CDS feature: Show annotated coding region and translation. more...
  
  Line length: Number of letters to show on one line in an alignment.
- 4 sequences selected
- Help
Loading alignment... for sequences ref|WP_122649141.1|,ref|WP_117083536.1|,ref|WP_117081691.1|,ref|NP_057855.1| Reading indexes 1-4

Download GenPept Graphics Next Previous Descriptions

Vpu [Burkholderia pseudomallei]
Sequence ID: WP_122649141.1Length: 86Number of Matches: 1

Related Information

Range 1: 23 to 86GenPept Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Method Identities Positives Gaps Frame

107 bits(266) 2e-28() Compositional matrix adjust. 54/64(84%) 58/64(90%) 0/64(0%)

Features:

Query 1 IAIIVWIIVYIEYRKLVRQRKIDRLIERIREREEDSGNESDGDHEELSTMVDMGHLRLLD 60 IAIIVW IVY+EYRKLVRQRKID LIERIRER EDSGNES+GD EEL+TMVDMGHLRLLD Sbjct 23 IAIIVWTIVYLEYRKLVRQRKIDWLIERIRERAEDSGNESEGDTEELATMVDMGHLRLLD 82 Query 61 ANGL 64 + L Sbjct 83 VHDL 86

Download GenPept Graphics Next Previous Descriptions

Vpu [Klebsiella pneumoniae]
Sequence ID: WP_117083536.1Length: 86Number of Matches: 1

Related Information

Range 1: 23 to 86GenPept Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Method Identities Positives Gaps Frame

103 bits(256) 5e-27() Compositional matrix adjust. 51/64(80%) 59/64(92%) 0/64(0%)

Features:

Query 1 IAIIVWIIVYIEYRKLVRQRKIDRLIERIREREEDSGNESDGDHEELSTMVDMGHLRLLD 60 IAIIVWI+VY+EYRK+VRQRKID LI+RIRER EDSGNES+GD+E+L+TMVDM HLRLLD Sbjct 23 IAIIVWILVYLEYRKIVRQRKIDWLIKRIRERAEDSGNESEGDNEDLATMVDMEHLRLLD 82 Query 61 ANGL 64 N L Sbjct 83 VNDL 86

Download GenPept Graphics Next Previous Descriptions

Vpu [Klebsiella pneumoniae]
Sequence ID: WP_117081691.1Length: 86Number of Matches: 1

Related Information

Range 1: 26 to 86GenPept Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Method Identities Positives Gaps Frame

101 bits(252) 2e-26() Compositional matrix adjust. 49/61(80%) 55/61(90%) 0/61(0%)

Features:

Query 4 IVWIIVYIEYRKLVRQRKIDRLIERIREREEDSGNESDGDHEELSTMVDMGHLRLLDANG 63 +VW I YIEYRKL+RQ++ID+LI+RIRER EDSGNESDGD EELSTMVDMGHLRLLD N Sbjct 26 VVWTIAYIEYRKLLRQKRIDQLIKRIRERAEDSGNESDGDTEELSTMVDMGHLRLLDGND 85 Query 64 L 64 L Sbjct 86 L 86

Download GenPept Graphics Next Previous Descriptions

Vpu [Human immunodeficiency virus 1]
Sequence ID: NP_057855.1Length: 82Number of Matches: 1

Related Information
Gene-associated gene details

Range 1: 23 to 82GenPept Graphics Next Match Previous Match First Match

Alignment statistics for match #1
Score Expect Method Identities Positives Gaps Frame

64.7 bits(156) 9e-12() Compositional matrix adjust. 36/60(60%) 44/60(73%) 1/60(1%)

Features:

Query 6 WIIVYIEYRKLVRQRKIDRLIERIREREEDSGNESDGDHEELSTM-VDMGHLRLLDANGL 64 W IV IEYRK++RQRKIDRLI+R+ ER EDSGNES+G+ L M V+MGH D + L Sbjct 23 WSIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEISALVEMGVEMGHHAPWDVDDL 82

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
107 bits(266)	2e-28()	Compositional matrix adjust.	54/64(84%)	58/64(90%)	0/64(0%)

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
103 bits(256)	5e-27()	Compositional matrix adjust.	51/64(80%)	59/64(92%)	0/64(0%)

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
101 bits(252)	2e-26()	Compositional matrix adjust.	49/61(80%)	55/61(90%)	0/61(0%)

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
64.7 bits(156)	9e-12()	Compositional matrix adjust.	36/60(60%)	44/60(73%)	1/60(1%)

Taxonomy

4 sequences selected
Help

Lineage

Lineage Report
Organism	Blast Name	Score	Number of Hits	Description
root			4
.Pseudomonadota	proteobacteria		3
..Burkholderia pseudomallei	b-proteobacteria	107	1	Burkholderia pseudomallei hits
..Klebsiella pneumoniae	enterobacteria	103	2	Klebsiella pneumoniae hits
.Human immunodeficiency virus 1	viruses	64.7	1	Human immunodeficiency virus 1 hits

Organism

Organism Report
Description	Score	E value	Accession
Burkholderia pseudomallei [b-proteobacteria] Next Previous First
Vpu [Burkholderia pseudomallei]	107	2e-28	WP_122649141
Klebsiella pneumoniae [enterobacteria] Next Previous First
Vpu [Klebsiella pneumoniae]	103	5e-27	WP_117083536
Vpu [Klebsiella pneumoniae]	101	2e-26	WP_117081691
Human immunodeficiency virus 1 [viruses] Next Previous First
Vpu [Human immunodeficiency virus 1]	64.7	9e-12	NP_057855

Taxonomy

Taxonomy Report
Taxonomy	Number of hits	Number of Organisms	Description
root	4	3
. Pseudomonadota	3	2
.. Burkholderia pseudomallei	1	1	Burkholderia pseudomallei hits
.. Klebsiella pneumoniae	2	1	Klebsiella pneumoniae hits
. Human immunodeficiency virus 1	1	1	Human immunodeficiency virus 1 hits

Filter Results

Sequences producing significant alignments