(cache)NCBI Blast:ref|NZ

Save Search

Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	5000
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Jan 26, 2025 2:10 AM
Number of letters	2,675,527,358,097
Number of sequences	112,073,831
Entrez query	Includes: Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	37
Effective length of query	511
Effective length of database	2671380626350
Effective search space	1365075500064850
Effective search space used	1365075500064850

Searches from this IP address have consumed a large amount of server CPU time. Future searches may be penalized in fairness to other users.

Please consider running your BLAST searches with ElasticBLAST or BLAST+.

Job Title

ref|NZ_RACX01000130.1| ...

RID

TFTDCPG9013 Search expires on 01-29 02:59 am

Download All

Results for

Program

BLASTN

Citation

Database

See details

Title:Nucleotide collection (nt)
Description:The nucleotide collection consists of GenBank+EMBL+DDBJ+PDB+RefSeq sequences, but excludes EST, STS, GSS, WGS, TSA, patent sequences as well as phase 0, 1, and 2 HTGS sequences and sequences longer than 100Mb. The database is non-redundant. Identical sequences have been merged into one entry, while preserving the accession, GI, title and taxonomy information for each entry.
Molecule Type:mixed DNA
Update date:2025/01/26
Number of sequences:111872320

Query ID

NZ_RACX01000130.1

Description

Pseudomonas aeruginosa strain VET-42 NODE_97_length_548_cov_2.70913_ID_193, whole genome shotgun sequence ...

Molecule type

dna

Query Length

548

Other reports

Distance tree of results MSA viewer

Filter Results

Descriptions

select all
100 sequences selected

, AlignDB=on Reading indexes 1-5, displaying indexes 1-5, AlignDB=on Reading indexes 6-10, displaying indexes 6-10

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq AY812751.1	HIV-1 isolate EST2001-163 from Estonia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	699	699	92%	0.0	91.72%	3011	AY812751.1
2Select seq AY535660.1	HIV-1 isolate EE0369 from Estonia, complete genome	Human immunodeficiency virus 1	NA	11676	682	682	92%	0.0	91.12%	9229	AY535660.1
3Select seq GU481600.1	HIV-1 isolate 06.RU.SP-SC1283.VI.2B5 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	654	654	92%	0.0	90.14%	2520	GU481600.1
4Select seq GU481598.1	HIV-1 isolate 06.RU.SP-SC1283.VI.A10 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	652	652	95%	0.0	89.48%	2520	GU481598.1
5Select seq GU481605.1	HIV-1 isolate 06.RU.SP-SC1283.VI.E3 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	649	649	92%	0.0	89.94%	2520	GU481605.1
6Select seq GU481595.1	HIV-1 isolate 06.RU.SP-SC1283.VI.F10 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	649	649	92%	0.0	89.94%	2520	GU481595.1
7Select seq GU481607.1	HIV-1 isolate 06.RU.SP-SC1283.VI.2G5 from Russia nonfunctional envelope glycoprotein (env) gene, complete sequence	Human immunodeficiency virus 1	NA	11676	647	647	96%	2e-180	89.04%	2520	GU481607.1
8Select seq GU481602.1	HIV-1 isolate 06.RU.SP-SC1283.VI.2G7 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	647	647	96%	2e-180	89.04%	2520	GU481602.1
9Select seq GU481601.1	HIV-1 isolate 06.RU.SP-SC1283.VI.2A12 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	647	647	96%	2e-180	89.04%	2520	GU481601.1
10Select seq GU481613.1	HIV-1 isolate 06.RU.SP-SC1283.VI.2A5 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	643	643	92%	2e-179	89.74%	2541	GU481613.1
11Select seq GU481612.1	HIV-1 isolate 06.RU.SP-SC1283.VI.2B11 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	643	643	92%	2e-179	89.74%	2541	GU481612.1
12Select seq GU481611.1	HIV-1 isolate 06.RU.SP-SC1283.VI.B4 from Russia nonfunctional envelope glycoprotein (env) gene, complete sequence	Human immunodeficiency virus 1	NA	11676	643	643	92%	2e-179	89.74%	2540	GU481611.1
13Select seq GU481610.1	HIV-1 isolate 06.RU.SP-SC1283.VI.2D11 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	643	643	92%	2e-179	89.74%	2541	GU481610.1
14Select seq GU481609.1	HIV-1 isolate 06.RU.SP-SC1283.VI.B3 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	643	643	92%	2e-179	89.74%	2541	GU481609.1
15Select seq GU481606.1	HIV-1 isolate 06.RU.SP-SC1283.VI.G5 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	643	643	92%	2e-179	89.74%	2520	GU481606.1
16Select seq GU481604.1	HIV-1 isolate 06.RU.SP-SC1283.VI.2C12 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	643	643	92%	2e-179	89.74%	2520	GU481604.1
17Select seq GU481603.1	HIV-1 isolate 06.RU.SP-SC1283.VI.B7 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	643	643	92%	2e-179	89.74%	2520	GU481603.1
18Select seq GU481593.1	HIV-1 isolate 06.RU.SP-SC1283.VI.2E11 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	643	643	92%	2e-179	89.74%	2520	GU481593.1
19Select seq GU481592.1	HIV-1 isolate 06.RU.SP-SC1283.VI.2D6 from Russia nonfunctional envelope glycoprotein (env) gene, complete sequence	Human immunodeficiency virus 1	NA	11676	643	643	92%	2e-179	89.74%	2521	GU481592.1
20Select seq GU481599.1	HIV-1 isolate 06.RU.SP-SC1283.VI.E5 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	641	641	95%	8e-179	89.10%	2520	GU481599.1
21Select seq GU481614.1	HIV-1 isolate 06.RU.SP-SC1283.VI.D5 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	638	638	92%	1e-177	89.55%	2541	GU481614.1
22Select seq GU481608.1	HIV-1 isolate 06.RU.SP-SC1283.VI.2A1 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	638	638	92%	1e-177	89.55%	2541	GU481608.1
23Select seq GU481597.1	HIV-1 isolate 06.RU.SP-SC1283.VI.2B12 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	638	638	92%	1e-177	89.55%	2520	GU481597.1
24Select seq GU481596.1	HIV-1 isolate 06.RU.SP-SC1283.VI.F1 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	638	638	92%	1e-177	89.55%	2520	GU481596.1
25Select seq GU481594.1	HIV-1 isolate 06.RU.SP-SC1283.VI.2H1 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	638	638	92%	1e-177	89.55%	2520	GU481594.1
26Select seq GU481591.1	HIV-1 isolate 06.RU.SP-SC1283.VI.2A6 from Russia envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	638	638	92%	1e-177	89.55%	2520	GU481591.1
27Select seq KM606635.1	HIV-1 isolate A45 from Estonia gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	628	628	92%	6e-175	89.26%	8771	KM606635.1
28Select seq DQ167215.1	HIV-1 isolate EST2002-1169 from Estonia gag protein (gag) gene, complete cds; aberrant pol protein (pol) gene, partial cds; truncated vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds	Human immunodeficiency virus 1	NA	11676	616	616	92%	5e-171	88.57%	8404	DQ167215.1
29Select seq DQ400856.1	HIV-1 isolate 04RU001 from Russia, complete genome	Human immunodeficiency virus 1	NA	11676	608	608	92%	8e-169	88.58%	9224	DQ400856.1
30Select seq KM606629.1	HIV-1 isolate 69 from Estonia pol protein (pol) gene, partial cds; vif protein (vif) gene, complete cds; nonfunctional vpr protein (vpr) gene, complete sequence; and tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	603	603	92%	4e-167	88.47%	6961	KM606629.1
31Select seq KM606633.1	HIV-1 isolate A19 from Estonia gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	597	597	95%	2e-165	87.41%	8793	KM606633.1
32Select seq KM606631.1	HIV-1 isolate A13 from Estonia nonfunctional gag protein (gag) gene, complete sequence; nonfunctional pol protein (pol) gene, partial sequence; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	569	569	94%	4e-157	86.76%	8238	KM606631.1
33Select seq AY535659.1	HIV-1 isolate EE0359 from Estonia, complete genome	Human immunodeficiency virus 1	NA	11676	560	560	92%	2e-154	86.67%	9262	AY535659.1
34Select seq KM606628.1	HIV-1 isolate 41 from Estonia pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; nonfunctional env protein (env) gene, complete sequence; and nef protein (nef) gene, complete cds	Human immunodeficiency virus 1	NA	11676	549	549	91%	5e-151	86.60%	6989	KM606628.1
35Select seq OR327419.1	HIV-1 isolate 93JBJ6-19157 from South Korea envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	534	534	91%	1e-146	86.06%	2505	OR327419.1
36Select seq MN153481.1	HIV-1 isolate 06CMARC13 from Cameroon, complete genome	Human immunodeficiency virus 1	NA	11676	532	532	91%	5e-146	85.97%	8856	MN153481.1
37Select seq OR327420.1	HIV-1 isolate 93JBJ6-19158 from South Korea envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	529	529	91%	6e-145	85.91%	2505	OR327420.1
38Select seq FM955802.1	HIV-1 06TG.HT112 partial env gene for envelope glycoprotein gp160 precursor, surface protein region, genomic RNA, strain 06TG.HT112	HIV-1 06TG.HT112	NA	587234	520	520	91%	4e-142	85.57%	622	FM955802.1
39Select seq OR327257.1	HIV-1 isolate 16NSN1-19081 from South Korea envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	516	516	91%	5e-141	85.43%	2526	OR327257.1
40Select seq HM215265.1	HIV-1 isolate 1656.p21 from Senegal envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	Human immunodeficiency virus 1	NA	11676	510	510	91%	2e-139	85.34%	2526	HM215265.1
41Select seq AJ288982.1	Human immunodeficiency virus type 1 complete proviral genome, strain 95ML127 (form Mali)	Human immunodeficiency virus 1	NA	11676	501	501	91%	1e-136	84.90%	9719	AJ288982.1
42Select seq AJ429827.1	Human immunodeficiency virus type 1 proviral partial env gene for gp120, strain 97NE32	Human immunodeficiency virus 1	NA	11676	499	499	91%	5e-136	84.72%	1034	AJ429827.1
43Select seq AF069934.1	HIV-1 isolate NG3670 from Nigeria, envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	499	499	91%	5e-136	84.84%	2523	AF069934.1
44Select seq KM606637.1	HIV-1 isolate A49 from Estonia gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	494	494	92%	2e-134	84.41%	8772	KM606637.1
45Select seq AJ245481.2	Human immunodeficiency virus type 1 proviral complete genome, isolate 95ML84	Human immunodeficiency virus 1	NA	11676	494	494	91%	2e-134	84.55%	9715	AJ245481.2
46Select seq OR327258.1	HIV-1 isolate 16NSN1-19082 from South Korea envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	488	488	91%	1e-132	84.42%	2532	OR327258.1
47Select seq AJ429838.1	Human immunodeficiency virus type 1 proviral partial env gene for gp120, strain 97NE50	Human immunodeficiency virus 1	NA	11676	481	481	90%	2e-130	84.42%	585	AJ429838.1
48Select seq PQ809491.1	HIV-1 isolate 07JSE5-19540 from South Korea envelope glycoprotein (env) gene, complete cds; and nef protein (nef) gene, partial cds	Human immunodeficiency virus 1	NA	11676	479	479	91%	7e-130	84.25%	2724	PQ809491.1
49Select seq OR327256.1	HIV-1 isolate 16NSN1-19080/14627 from South Korea envelope glycoprotein (env) and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	477	477	91%	2e-129	84.07%	3160	OR327256.1
50Select seq AJ554972.1	Human immunodeficiency virus type 1 proviral partial env gene for gp120 protein, V3V5 sequence, isolate 97CM.K1068	Human immunodeficiency virus 1	NA	11676	473	473	91%	3e-128	83.79%	623	AJ554972.1
51Select seq AJ429892.1	Human immunodeficiency virus type 1 proviral partial env gene for gp120, strain 00NE055	Human immunodeficiency virus 1	NA	11676	472	472	91%	1e-127	83.89%	1032	AJ429892.1
52Select seq AJ508596.1	Human immunodeficiency virus type 1 complete proviral genome, isolate 00NE95	Human immunodeficiency virus 1	NA	11676	470	470	91%	4e-127	83.86%	9698	AJ508596.1
53Select seq AJ293865.1	Human immunodeficiency virus type 1 genome, A/G/J complex recombinant	Human immunodeficiency virus 1	NA	11676	468	468	91%	1e-126	83.73%	8757	AJ293865.1
54Select seq AF466206.1	HIV-1 isolate 16092 from Spain envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	468	468	93%	1e-126	83.40%	591	AF466206.1
55Select seq AB485662.1	Human immunodeficiency virus 1 proviral DNA, complete genome, clone: pPRD320-16G41	Human immunodeficiency virus 1	NA	11676	464	464	91%	2e-125	83.73%	9707	AB485662.1
56Select seq OR327366.1	HIV-1 isolate 21JIG7-19206 from South Korea envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	462	462	91%	7e-125	83.46%	2562	OR327366.1
57Select seq DQ645291.1	HIV-1 clone D042 from Burkina Faso envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	459	459	92%	9e-124	83.27%	582	DQ645291.1
58Select seq DQ645286.1	HIV-1 clone D008 from Burkina Faso envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	459	459	91%	9e-124	83.43%	588	DQ645286.1
59Select seq OR327363.1	HIV-1 isolate 07JIG5-19077/3426 from South Korea envelope glycoprotein (env) and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	457	457	91%	3e-123	83.27%	3199	OR327363.1
60Select seq GU573779.1	HIV-1 isolate K018_plasma1 from Ghana envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	455	455	91%	1e-122	83.23%	984	GU573779.1
61Select seq AM279346.2	Human immunodeficiency virus 1 proviral env gene for envelope protein, isolate 97CM.MP801	Human immunodeficiency virus 1	NA	11676	455	455	91%	1e-122	83.13%	2514	AM279346.2
62Select seq AF355326.1	HIV-1 99CMLB11 from Cameroon envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	455	455	90%	1e-122	83.40%	570	AF355326.1
63Select seq AJ554893.1	Human immunodeficiency virus type 1 proviral partial env gene for gp120 protein, V3V5 sequence, isolate 97CM.MP801	Human immunodeficiency virus 1	NA	11676	455	455	91%	1e-122	83.13%	896	AJ554893.1
64Select seq KU168268.1	HIV-1 isolate LA13BF17 from Burkina Faso, complete genome	Human immunodeficiency virus 1	NA	11676	453	453	91%	4e-122	83.10%	9622	KU168268.1
65Select seq AJ490801.1	Human immunodeficiency virus type 1 proviral partial env gene for gp120 protein, strain 00TCD.3028	Human immunodeficiency virus 1	NA	11676	451	451	91%	1e-121	83.11%	551	AJ490801.1
66Select seq FM955770.1	HIV-1 06TG.HT048 partial env gene for envelope glycoprotein gp160 precursor, surface protein region, genomic RNA, strain 06TG.HT048	HIV-1 06TG.HT048	NA	587213	449	449	91%	5e-121	82.91%	619	FM955770.1
67Select seq AJ429915.1	Human immunodeficiency virus type 1 proviral partial env gene for gp120, strain 00NE095	Human immunodeficiency virus 1	NA	11676	448	448	91%	2e-120	83.07%	1000	AJ429915.1
68Select seq AB485663.1	Human immunodeficiency virus 1 proviral DNA, complete genome, clone: pPRD320-16G46	Human immunodeficiency virus 1	NA	11676	446	446	93%	7e-120	82.71%	9707	AB485663.1
69Select seq AY346008.1	HIV-1 isolate D291 from Burkina Faso envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	446	446	91%	7e-120	82.98%	592	AY346008.1
70Select seq AJ245486.1	Human immunodeficiency virus type 1 partial proviral env gene, isolate SE-40HPD	Human immunodeficiency virus 1	NA	11676	446	446	91%	7e-120	82.79%	596	AJ245486.1
71Select seq AF061640.1	HIV-1 isolate HH8793 clone 1.1 from Finland, complete genome	Human immunodeficiency virus 1	NA	11676	446	446	93%	7e-120	82.71%	9048	AF061640.1
72Select seq AJ429810.1	Human immunodeficiency virus type 1 proviral partial env gene for gp120, strain 97NE01	Human immunodeficiency virus 1	NA	11676	444	444	91%	2e-119	82.94%	1006	AJ429810.1
73Select seq MF614605.1	HIV-1 isolate RU_ShRMT_1989 from Russia, complete genome	Human immunodeficiency virus 1	NA	11676	442	442	91%	9e-119	82.70%	8897	MF614605.1
74Select seq U08363.1	HIV-1 RU107D from Russia, gp120 V3-V5 region (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	440	440	90%	3e-118	82.90%	672	U08363.1
75Select seq OR327364.1	HIV-1 isolate 21JIG7-19210 from South Korea envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	438	438	91%	1e-117	82.60%	2574	OR327364.1
76Select seq OR327325.1	HIV-1 isolate 09YYH2-19205 from South Korea envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	438	438	91%	1e-117	82.63%	2550	OR327325.1
77Select seq AJ272644.1	Human immunodeficiency virus type 1 proviral partial env gene for gp120, isolate 97SE-1078	Human immunodeficiency virus 1	NA	11676	438	438	91%	1e-117	82.59%	584	AJ272644.1
78Select seq AJ245485.1	Human immunodeficiency virus type 1 partial proviral env gene, isolate SE-1078	Human immunodeficiency virus 1	NA	11676	438	438	91%	1e-117	82.59%	587	AJ245485.1
79Select seq PQ809492.1	HIV-1 isolate 07JSE5-19541 from South Korea envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	435	435	91%	1e-116	82.68%	1096	PQ809492.1
80Select seq AJ404037.1	Human immunodeficiency virus type 1 proviral partial env gene for envelope glycoprotein gp120, strain G_97DC.KFE181	Human immunodeficiency virus 1	NA	11676	435	435	91%	1e-116	82.49%	558	AJ404037.1
81Select seq AJ389730.1	Human immunodeficiency virus type 1 partial env gene for exterior membrane protein gp120, isolate 96NG-CSW46	Human immunodeficiency virus 1	NA	11676	435	435	91%	1e-116	82.55%	1005	AJ389730.1
82Select seq U08358.1	HIV-1 RU104 from Russia, gp120 V3-V5 region (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	435	435	91%	1e-116	82.50%	678	U08358.1
83Select seq PQ809496.1	HIV-1 isolate 13JSE7-19545 from South Korea envelope glycoprotein (env) gene, complete cds	Human immunodeficiency virus 1	NA	11676	433	433	91%	5e-116	82.51%	2514	PQ809496.1
84Select seq OR327345.1	HIV-1 isolate 93LMS1-19108/16090 from South Korea envelope glycoprotein (env) and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	433	433	91%	5e-116	82.38%	3181	OR327345.1
85Select seq OR327321.1	HIV-1 isolate 12YYH7-19074/10355 from South Korea envelope glycoprotein (env) and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	433	433	91%	5e-116	82.40%	3172	OR327321.1
86Select seq FM955812.1	HIV-1 06TG.HT129 partial env gene for envelope glycoprotein gp160 precursor, surface protein region, genomic RNA, strain 06TG.HT129	HIV-1 06TG.HT129	NA	587242	433	433	91%	5e-116	82.24%	602	FM955812.1
87Select seq DQ168576.1	HIV-1 isolate 01NGPL0669 from Nigeria gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	431	431	91%	2e-115	82.57%	8837	DQ168576.1
88Select seq AY249787.1	HIV-1 subject MIH95 from Senegal envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	429	429	91%	7e-115	82.27%	589	AY249787.1
89Select seq U08365.1	HIV-1 RU509 gp120 V3-V5 region (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	429	429	91%	7e-115	82.31%	675	U08365.1
90Select seq U08359.1	HIV-1 RU105 from Russia, gp120 V3-V5 region (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	429	429	91%	7e-115	82.41%	678	U08359.1
91Select seq OR327359.1	HIV-1 isolate 13JSE7-19075/10347 from South Korea envelope glycoprotein (env) and nef protein (nef) genes, complete cds	Human immunodeficiency virus 1	NA	11676	427	427	91%	2e-114	82.22%	3175	OR327359.1
92Select seq AJ630562.1	Human immunodeficiency virus type 1 proviral partial env gene for exterior membrane glycoprotein gp120, patient 98CG867	Human immunodeficiency virus 1	NA	11676	427	427	91%	2e-114	82.30%	573	AJ630562.1
93Select seq AM086519.2	Human immunodeficiency virus type 1 proviral partial env gene for polyprotein, isolate CgARV41env	Human immunodeficiency virus 1	NA	11676	427	427	91%	2e-114	82.32%	580	AM086519.2
94Select seq FJ346506.1	HIV-1 isolate H01_3324 from Kenya envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	91%	9e-114	82.41%	1206	FJ346506.1
95Select seq AY755086.1	HIV-1 isolate EST2002-1150 from Estonia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	57%	9e-114	90.88%	396	AY755086.1
96Select seq AY754974.1	HIV-1 isolate EST2001-1132 from Estonia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	58%	9e-114	90.91%	397	AY754974.1
97Select seq AY754973.1	HIV-1 isolate EST2001-1279 from Estonia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	58%	9e-114	90.91%	397	AY754973.1
98Select seq AY754966.1	HIV-1 isolate EST2001-164 from Estonia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	58%	9e-114	90.91%	399	AY754966.1
99Select seq AY754962.1	HIV-1 isolate EST2001-1271 from Estonia envelope glycoprotein (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	58%	9e-114	90.91%	416	AY754962.1
100Select seq U08355.1	HIV-1 RU103A from Russia, gp120 V3-V5 region (env) gene, partial cds	Human immunodeficiency virus 1	NA	11676	425	425	91%	9e-114	82.36%	675	U08355.1

- hover to see the title
- click to show alignments
- Show Conserved Domains
- Alignment Scores
- < 40
- 40 - 50
- 50 - 80
- 80 - 200
- >= 200
- Help
  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
- 100 sequences selected
- Help
Distribution of the top 100 Blast Hits on 100 subject sequences

Query

1
100
200
300
400
500

Alignments

100 sequences selected
Help

Download GenBank Graphics Next Previous Descriptions

HIV-1 isolate EST2001-163 from Estonia envelope glycoprotein (env) gene, complete cds

Sequence ID: AY812751.1Length: 3011Number of Matches: 1

Range 1: 1111 to 1614GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
699 bits(378)	0.0()	465/507(92%)	6/507(1%)	Plus/Minus

Query  34    GACCCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGATCTACATGTAATGATTCCTGCA  93
             ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct  1614  GACCCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGATGTACATGTAATGTTTCCTGCA  1555

Query  94    ATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCACATTCTTACAATTTGTCTTATT  153
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  1554  ATGGGAGGGGCATACATTGCTTGTGCTACTTTTTGCCACATTCTTACAATTTGTCTTATT  1495

Query  154   TTACATGGGAGTTTGATAATAGTCCCATTATTTTTTGATGAGCTATTAAACAGGTCTGAT  213
             |||||||||||| |||||   ||| ||||| || ||||||||||||||||||| | ||||
Sbjct  1494  TTACATGGGAGTGTGATA---GTCTCATTACTTCTTGATGAGCTATTAAACAGTTTTGAT  1438

Query  214   GTATTACAGTAGAAAAATTCTCCTCCACAATTAAAAGTATGTGTTATAATTTCTAGGTCC  273
             |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  1437  GTATTACAATAGAAAAATTCTCCTCCACAATTAAAACTATGTGTTGTAATTTCTAGGTCC  1378

Query  274   CCTCCTGCTGATGACTTAAAGGATATGTTC---CCAGGAAAGAATTCCTTTAGTTTTGCT  330
             |||||||| ||||| ||||||| |||||||   ||||||||| |||||||||||||||||
Sbjct  1377  CCTCCTGCCGATGAATTAAAGGTTATGTTCTTACCAGGAAAGGATTCCTTTAGTTTTGCT  1318

Query  331   TTCACCTTATTTAACATATCGTCCCATTTATCTCCACTAATGTTACAATAAGCTTGTCTT  390
              ||||||||| |||||| || | ||||||  |||||||||||||||||| ||||||||||
Sbjct  1317  ATCACCTTATGTAACATCTCATTCCATTTTGCTCCACTAATGTTACAATGAGCTTGTCTT  1258

Query  391   ATACTTCCTATTATGTCACCTGTTGCAAAAAATGCTTGCCCTGGTCCAAGGTGTATACTT  450
             |||  ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct  1257  ATATCTCCTATTATGTCACCTGTTGCAAAAAACGCTTGCCCTGGTCCAATGTGTATACTT  1198

Query  451   TTTCTTGTATTATTATTGGGTCTGGTACAGTTAATTTCTACAGACTGATTAAACTGCACT  510
              ||||||||||||||| ||||||||||||  |||| |||||||| ||||||| |||||||
Sbjct  1197  CTTCTTGTATTATTATAGGGTCTGGTACATATAATGTCTACAGATTGATTAAGCTGCACT  1138

Query  511   ATTATGGTTTTGGTATTGTCTGTAATG  537
             ||||||||||||||||||||||| |||
Sbjct  1137  ATTATGGTTTTGGTATTGTCTGTGATG  1111

Download GenBank Graphics Next Previous Descriptions

HIV-1 isolate EE0369 from Estonia, complete genome

Sequence ID: AY535660.1Length: 9229Number of Matches: 1

Range 1: 6723 to 7226GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
682 bits(369)	0.0()	462/507(91%)	6/507(1%)	Plus/Minus

Query  34    GACCCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGATCTACATGTAATGATTCCTGCA  93
             ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct  7226  GACCCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGATGTACATGTAATGTTTCCTGCA  7167

Query  94    ATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCACATTCTTACAATTTGTCTTATT  153
             ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||
Sbjct  7166  ATGGGAGGGGCATACATAGCTCGTGCTACTTTTTGCCACATTCTTACAATTTGTCTTATT  7107

Query  154   TTACATGGGAGTTTGATAATAGTCCCATTATTTTTTGATGAGCTATTAAACAGGTCTGAT  213
             |||||||||||| |||||   ||| ||||| || ||||||||||||||||||| | ||||
Sbjct  7106  TTACATGGGAGTGTGATA---GTCTCATTACTTCTTGATGAGCTATTAAACAGTTTTGAT  7050

Query  214   GTATTACAGTAGAAAAATTCTCCTCCACAATTAAAAGTATGTGTTATAATTTCTAGGTCC  273
             |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  7049  GTATTACAATAGAAAAATTCTCCTCCACAATTAAAACTATGTGTTGTAATTTCTAGGTCC  6990

Query  274   CCTCCTGCTGATGACTTAAAGGATATGTTC---CCAGGAAAGAATTCCTTTAGTTTTGCT  330
             |||||||| ||||| ||||||| |||||||   ||||||||| ||||||||| |||||||
Sbjct  6989  CCTCCTGCCGATGAATTAAAGGTTATGTTCTTACCAGGAAAGGATTCCTTTAATTTTGCT  6930

Query  331   TTCACCTTATTTAACATATCGTCCCATTTATCTCCACTAATGTTACAATAAGCTTGTCTT  390
              ||||||||| |||||| || | ||||||  |||||||||||||||||| ||||||||||
Sbjct  6929  ATCACCTTATGTAACATCTCATTCCATTTTGCTCCACTAATGTTACAATGAGCTTGTCTT  6870

Query  391   ATACTTCCTATTATGTCACCTGTTGCAAAAAATGCTTGCCCTGGTCCAAGGTGTATACTT  450
             |||  ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct  6869  ATATCTCCTATTATGTCACCTGTTGCAAAAAACGCTTGCCCTGGTCCAATGTGTATACTT  6810

Query  451   TTTCTTGTATTATTATTGGGTCTGGTACAGTTAATTTCTACAGACTGATTAAACTGCACT  510
              ||||||||||||||| ||||||||||||  |||| |||||||| ||||||| |||||||
Sbjct  6809  CTTCTTGTATTATTATAGGGTCTGGTACATATAATGTCTACAGATTGATTAAGCTGCACT  6750

Query  511   ATTATGGTTTTGGTATTGTCTGTAATG  537
             ||||||||||||||||||||||| |||
Sbjct  6749  ATTATGGTTTTGGTATTGTCTGTGATG  6723

Download GenBank Graphics Next Previous Descriptions

HIV-1 isolate 06.RU.SP-SC1283.VI.2B5 from Russia envelope glycoprotein (env) gene, complete cds

Sequence ID: GU481600.1Length: 2520Number of Matches: 1

Range 1: 822 to 1325GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
654 bits(354)	0.0()	457/507(90%)	6/507(1%)	Plus/Minus

Query  34    GACCCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGATCTACATGTAATGATTCCTGCA  93
             ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct  1325  GACCCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGATGTACATGTAATGTTTCCTGCA  1266

Query  94    ATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCACATTCTTACAATTTGTCTTATT  153
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1265  ATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCACATTCTTACAATTTGTCTTATT  1206

Query  154   TTACATGGGAGTTTGATAATAGTCCCATTATTTTTTGATGAGCTATTAAACAGGTCTGAT  213
             |||||||||||| |||||   ||||||||| || |||||||| |||||||||| | ||||
Sbjct  1205  TTACATGGGAGTGTGATA---GTCCCATTACTTATTGATGAGTTATTAAACAGTTGTGAT  1149

Query  214   GTATTACAGTAGAAAAATTCTCCTCCACAATTAAAAGTATGTGTTATAATTTCTAGGTCC  273
             |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  1148  GTATTACAATAGAAAAATTCTCCTCCACAATTAAAACTATGTGTTGTAATTTCTAGGTCC  1089

Query  274   CCTCCTGCTGATGACTTAAAGGATATGTTCCCA---GGAAAGAATTCCTTTAGTTTTGCT  330
             |||||||| | ||||||||||| |||| ||| |   |||||| |||||||||||||| ||
Sbjct  1088  CCTCCTGCCGGTGACTTAAAGGTTATGGTCCTATTAGGAAAGGATTCCTTTAGTTTTTCT  1029

Query  331   TTCACCTTATTTAACATATCGTCCCATTTATCTCCACTAATGTTACAATAAGCTTGTCTT  390
              ||||||||| || | | || | |||||| ||||||||||||||||||| ||||||||||
Sbjct  1028  GTCACCTTATGTATCGTCTCATTCCATTTTTCTCCACTAATGTTACAATGAGCTTGTCTT  969

Query  391   ATACTTCCTATTATGTCACCTGTTGCAAAAAATGCTTGCCCTGGTCCAAGGTGTATACTT  450
             |||  |||||||||||||||||||||| |||| | ||| |||||||||| ||||||||||
Sbjct  968   ATATCTCCTATTATGTCACCTGTTGCATAAAACGATTGTCCTGGTCCAATGTGTATACTT  909

Query  451   TTTCTTGTATTATTATTGGGTCTGGTACAGTTAATTTCTACAGACTGATTAAACTGCACT  510
             ||||||||||| |||| ||||||||||||  |||| | |||||  ||||||| |||||||
Sbjct  908   TTTCTTGTATTGTTATAGGGTCTGGTACATGTAATGTTTACAGCTTGATTAAGCTGCACT  849

Query  511   ATTATGGTTTTGGTATTGTCTGTAATG  537
             ||||||||||||||||||||||| |||
Sbjct  848   ATTATGGTTTTGGTATTGTCTGTGATG  822

Download GenBank Graphics Next Previous Descriptions

HIV-1 isolate 06.RU.SP-SC1283.VI.A10 from Russia envelope glycoprotein (env) gene, complete cds

Sequence ID: GU481598.1Length: 2520Number of Matches: 1

Range 1: 822 to 1338GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
652 bits(353)	0.0()	468/523(89%)	9/523(1%)	Plus/Minus

Query  18    ATTACCTCCCTTAGACGACCCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGATCTACA  77
             ||||| ||||||||||   |||||||||||||||||||||||||||||||||||| ||||
Sbjct  1338  ATTACTTCCCTTAGAC---CCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGATGTACA  1282

Query  78    TGTAATGATTCCTGCAATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCACATTCT  137
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1281  TGTAATGTTTCCTGCAATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCACATTCT  1222

Query  138   TACAATTTGTCTTATTTTACATGGGAGTTTGATAATAGTCCCATTATTTTTTGATGAGCT  197
             |||||||||||||||||||||||||||| |||||   ||||||||| || |||||||| |
Sbjct  1221  TACAATTTGTCTTATTTTACATGGGAGTGTGATA---GTCCCATTACTTATTGATGAGTT  1165

Query  198   ATTAAACAGGTCTGATGTATTACAGTAGAAAAATTCTCCTCCACAATTAAAAGTATGTGT  257
             ||||||||| | |||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct  1164  ATTAAACAGTTGTGATGTATTACAATAGAAAAATTCTCCTCCACAATTAAAACTATGTGT  1105

Query  258   TATAATTTCTAGGTCCCCTCCTGCTGATGACTTAAAGGATATGTTCCCA---GGAAAGAA  314
             | |||||||||||||||||||||| | ||||| ||||| |||||||| |   |||||| |
Sbjct  1104  TGTAATTTCTAGGTCCCCTCCTGCCGGTGACTCAAAGGTTATGTTCCTATTAGGAAAGGA  1045

Query  315   TTCCTTTAGTTTTGCTTTCACCTTATTTAACATATCGTCCCATTTATCTCCACTAATGTT  374
             ||||||||||||| || ||||||||| || | | || | |||||| ||||||||||||||
Sbjct  1044  TTCCTTTAGTTTTTCTGTCACCTTATGTATCGTCTCATTCCATTTTTCTCCACTAATGTT  985

Query  375   ACAATAAGCTTGTCTTATACTTCCTATTATGTCACCTGTTGCAAAAAATGCTTGCCCTGG  434
             ||||| |||||||||||||  |||||||||| ||||||||||| |||| | ||| |||||
Sbjct  984   ACAATGAGCTTGTCTTATATCTCCTATTATGGCACCTGTTGCATAAAACGATTGTCCTGG  925

Query  435   TCCAAGGTGTATACTTTTTCTTGTATTATTATTGGGTCTGGTACAGTTAATTTCTACAGA  494
             ||||| ||||||||||||||||||||| |||| ||||||||||||  |||| | ||||| 
Sbjct  924   TCCAATGTGTATACTTTTTCTTGTATTGTTATAGGGTCTGGTACATGTAATGTTTACAGC  865

Query  495   CTGATTAAACTGCACTATTATGGTTTTGGTATTGTCTGTAATG  537
              ||||||| |||||||||||||||||||||||||||||| |||
Sbjct  864   TTGATTAAGCTGCACTATTATGGTTTTGGTATTGTCTGTGATG  822

Download GenBank Graphics Next Previous Descriptions

HIV-1 isolate 06.RU.SP-SC1283.VI.E3 from Russia envelope glycoprotein (env) gene, complete cds

Sequence ID: GU481605.1Length: 2520Number of Matches: 1

Range 1: 822 to 1325GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
649 bits(351)	0.0()	456/507(90%)	6/507(1%)	Plus/Minus

Query  34    GACCCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGATCTACATGTAATGATTCCTGCA  93
             ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct  1325  GACCCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGATGTACATGTAATGTTTCCTGCA  1266

Query  94    ATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCACATTCTTACAATTTGTCTTATT  153
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1265  ATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCACATTCTTACAATTTGTCTTATT  1206

Query  154   TTACATGGGAGTTTGATAATAGTCCCATTATTTTTTGATGAGCTATTAAACAGGTCTGAT  213
             |||||||||||| |||||   ||||||||| || |||||||| |||||||||| | ||||
Sbjct  1205  TTACATGGGAGTGTGATA---GTCCCATTACTTATTGATGAGTTATTAAACAGTTGTGAT  1149

Query  214   GTATTACAGTAGAAAAATTCTCCTCCACAATTAAAAGTATGTGTTATAATTTCTAGGTCC  273
             |||||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct  1148  GTATTACAATAGAAAAATTCTCCTCTACAATTAAAACTATGTGTTGTAATTTCTAGGTCC  1089

Query  274   CCTCCTGCTGATGACTTAAAGGATATGTTCCCA---GGAAAGAATTCCTTTAGTTTTGCT  330
             |||||||| | ||||||||||| |||| ||| |   |||||| |||||||||||||| ||
Sbjct  1088  CCTCCTGCCGGTGACTTAAAGGTTATGGTCCTATTAGGAAAGGATTCCTTTAGTTTTTCT  1029

Query  331   TTCACCTTATTTAACATATCGTCCCATTTATCTCCACTAATGTTACAATAAGCTTGTCTT  390
              ||||||||| || | | || | |||||| ||||||||||||||||||| ||||||||||
Sbjct  1028  GTCACCTTATGTATCGTCTCATTCCATTTTTCTCCACTAATGTTACAATGAGCTTGTCTT  969

Query  391   ATACTTCCTATTATGTCACCTGTTGCAAAAAATGCTTGCCCTGGTCCAAGGTGTATACTT  450
             |||  |||||||||||||||||||||| |||| | ||| |||||||||| ||||||||||
Sbjct  968   ATATCTCCTATTATGTCACCTGTTGCATAAAACGATTGTCCTGGTCCAATGTGTATACTT  909

Query  451   TTTCTTGTATTATTATTGGGTCTGGTACAGTTAATTTCTACAGACTGATTAAACTGCACT  510
             ||||||||||| |||| ||||||||||||  |||| | |||||  ||||||| |||||||
Sbjct  908   TTTCTTGTATTGTTATAGGGTCTGGTACATGTAATGTTTACAGCTTGATTAAGCTGCACT  849

Query  511   ATTATGGTTTTGGTATTGTCTGTAATG  537
             ||||||||||||||||||||||| |||
Sbjct  848   ATTATGGTTTTGGTATTGTCTGTGATG  822

Download GenBank Graphics Next Previous Descriptions

HIV-1 isolate 06.RU.SP-SC1283.VI.F10 from Russia envelope glycoprotein (env) gene, complete cds

Sequence ID: GU481595.1Length: 2520Number of Matches: 1

Range 1: 822 to 1325GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
649 bits(351)	0.0()	456/507(90%)	6/507(1%)	Plus/Minus

Query  34    GACCCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGATCTACATGTAATGATTCCTGCA  93
             ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct  1325  GACCCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGATGTACATGTAATGTTTCCTGCA  1266

Query  94    ATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCACATTCTTACAATTTGTCTTATT  153
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1265  ATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCACATTCTTACAATTTGTCTTATT  1206

Query  154   TTACATGGGAGTTTGATAATAGTCCCATTATTTTTTGATGAGCTATTAAACAGGTCTGAT  213
             |||||||||||| |||||   ||||||||| || |||||||| |||||||||| | ||||
Sbjct  1205  TTACATGGGAGTGTGATA---GTCCCATTACTTATTGATGAGTTATTAAACAGTTGTGAT  1149

Query  214   GTATTACAGTAGAAAAATTCTCCTCCACAATTAAAAGTATGTGTTATAATTTCTAGGTCC  273
             |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  1148  GTATTACAATAGAAAAATTCTCCTCCACAATTAAAACTATGTGTTGTAATTTCTAGGTCC  1089

Query  274   CCTCCTGCTGATGACTTAAAGGATATGTTCCCA---GGAAAGAATTCCTTTAGTTTTGCT  330
             |||||||| | ||||| ||||| |||| ||| |   |||||| |||||||||||||| ||
Sbjct  1088  CCTCCTGCCGGTGACTCAAAGGTTATGGTCCTATTAGGAAAGGATTCCTTTAGTTTTTCT  1029

Query  331   TTCACCTTATTTAACATATCGTCCCATTTATCTCCACTAATGTTACAATAAGCTTGTCTT  390
              ||||||||| || | | || | |||||| ||||||||||||||||||| ||||||||||
Sbjct  1028  GTCACCTTATGTATCGTCTCATTCCATTTTTCTCCACTAATGTTACAATGAGCTTGTCTT  969

Query  391   ATACTTCCTATTATGTCACCTGTTGCAAAAAATGCTTGCCCTGGTCCAAGGTGTATACTT  450
             ||| ||||||||||| ||||||||||| |||| | ||| |||||||||| ||||||||||
Sbjct  968   ATATTTCCTATTATGGCACCTGTTGCATAAAACGATTGTCCTGGTCCAATGTGTATACTT  909

Query  451   TTTCTTGTATTATTATTGGGTCTGGTACAGTTAATTTCTACAGACTGATTAAACTGCACT  510
             ||||||||||| |||| ||||||||||||  |||| | |||||  ||||||| |||||||
Sbjct  908   TTTCTTGTATTGTTATAGGGTCTGGTACATGTAATGTTTACAGCTTGATTAAGCTGCACT  849

Query  511   ATTATGGTTTTGGTATTGTCTGTAATG  537
             ||||||||||||||||||||||| |||
Sbjct  848   ATTATGGTTTTGGTATTGTCTGTGATG  822

Download GenBank Graphics Next Previous Descriptions

HIV-1 isolate 06.RU.SP-SC1283.VI.2G5 from Russia nonfunctional envelope glycoprotein (env) gene, complete sequence

Sequence ID: GU481607.1Length: 2520Number of Matches: 1

Range 1: 822 to 1344GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
647 bits(350)	2e-180()	471/529(89%)	9/529(1%)	Plus/Minus

Query  12    AGTGTTATTACCTCCCTTAGACGACCCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGA  71
             ||| ||||||| | ||||||||   |||||||||||||||||||||||||||||||||||
Sbjct  1344  AGTTTTATTACTTTCCTTAGAC---CCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGA  1288

Query  72    TCTACATGTAATGATTCCTGCAATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCA  131
             | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1287  TGTACATGTAATGTTTCCTGCAATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCA  1228

Query  132   CATTCTTACAATTTGTCTTATTTTACATGGGAGTTTGATAATAGTCCCATTATTTTTTGA  191
             |||||||||||||||||||||||||||||||||| |||||   |||||||||  | ||||
Sbjct  1227  CATTCTTACAATTTGTCTTATTTTACATGGGAGTGTGATA---GTCCCATTACGTATTGA  1171

Query  192   TGAGCTATTAAACAGGTCTGATGTATTACAGTAGAAAAATTCTCCTCCACAATTAAAAGT  251
             |||| |||||||||| | |||||||||||| |||||||||||||||| |||||||||| |
Sbjct  1170  TGAGTTATTAAACAGTTGTGATGTATTACAATAGAAAAATTCTCCTCTACAATTAAAACT  1111

Query  252   ATGTGTTATAATTTCTAGGTCCCCTCCTGCTGATGACTTAAAGGATATGTTCCCA---GG  308
             ||||||| |||||||||||||||||||||| | ||||| ||||| |||||||| |   ||
Sbjct  1110  ATGTGTTGTAATTTCTAGGTCCCCTCCTGCCGGTGACTCAAAGGTTATGTTCCTATTAGG  1051

Query  309   AAAGAATTCCTTTAGTTTTGCTTTCACCTTATTTAACATATCGTCCCATTTATCTCCACT  368
             |||| |||||||||||||| || ||||||||| || | | || | |||||| ||||||||
Sbjct  1050  AAAGGATTCCTTTAGTTTTTCTGTCACCTTATGTATCGTCTCATTCCATTTTTCTCCACT  991

Query  369   AATGTTACAATAAGCTTGTCTTATACTTCCTATTATGTCACCTGTTGCAAAAAATGCTTG  428
             ||||||||||| |||||||||||||  |||||||||||||||||||||| |||| | |||
Sbjct  990   AATGTTACAATGAGCTTGTCTTATATCTCCTATTATGTCACCTGTTGCATAAAACGATTG  931

Query  429   CCCTGGTCCAAGGTGTATACTTTTTCTTGTATTATTATTGGGTCTGGTACAGTTAATTTC  488
              |||||||||| ||||||||||||||||||||| |||| ||||||||||||  |||| | 
Sbjct  930   TCCTGGTCCAATGTGTATACTTTTTCTTGTATTGTTATAGGGTCTGGTACATGTAATGTT  871

Query  489   TACAGACTGATTAAACTGCACTATTATGGTTTTGGTATTGTCTGTAATG  537
             |||||  ||||||| |||||||||||||||||||||||||||||| |||
Sbjct  870   TACAGCTTGATTAAGCTGCACTATTATGGTTTTGGTATTGTCTGTGATG  822

Download GenBank Graphics Next Previous Descriptions

HIV-1 isolate 06.RU.SP-SC1283.VI.2G7 from Russia envelope glycoprotein (env) gene, complete cds

Sequence ID: GU481602.1Length: 2520Number of Matches: 1

Range 1: 822 to 1344GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
647 bits(350)	2e-180()	471/529(89%)	9/529(1%)	Plus/Minus

Query  12    AGTGTTATTACCTCCCTTAGACGACCCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGA  71
             ||| ||||||| | ||||||||   |||||||||||||||||||||||||||||||||||
Sbjct  1344  AGTTTTATTACTTTCCTTAGAC---CCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGA  1288

Query  72    TCTACATGTAATGATTCCTGCAATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCA  131
             | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1287  TGTACATGTAATGTTTCCTGCAATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCA  1228

Query  132   CATTCTTACAATTTGTCTTATTTTACATGGGAGTTTGATAATAGTCCCATTATTTTTTGA  191
             |||||||||||||||||||||||||||||||||| |||||   ||||||||| || ||||
Sbjct  1227  CATTCTTACAATTTGTCTTATTTTACATGGGAGTGTGATA---GTCCCATTACTTATTGA  1171

Query  192   TGAGCTATTAAACAGGTCTGATGTATTACAGTAGAAAAATTCTCCTCCACAATTAAAAGT  251
             |||| |||||||||| | |||||||||||| ||||||||||||||||||||||||||| |
Sbjct  1170  TGAGTTATTAAACAGTTGTGATGTATTACAATAGAAAAATTCTCCTCCACAATTAAAACT  1111

Query  252   ATGTGTTATAATTTCTAGGTCCCCTCCTGCTGATGACTTAAAGGATATGTTCCCA---GG  308
             ||||||| |||||||||||||||||||||| | ||||| ||||| |||||||  |   ||
Sbjct  1110  ATGTGTTGTAATTTCTAGGTCCCCTCCTGCCGGTGACTCAAAGGTTATGTTCTTATTAGG  1051

Query  309   AAAGAATTCCTTTAGTTTTGCTTTCACCTTATTTAACATATCGTCCCATTTATCTCCACT  368
             |||| |||||||||||||| || ||||||||| || | | || | ||||||  |||||||
Sbjct  1050  AAAGGATTCCTTTAGTTTTTCTGTCACCTTATGTATCGTCTCATTCCATTTTCCTCCACT  991

Query  369   AATGTTACAATAAGCTTGTCTTATACTTCCTATTATGTCACCTGTTGCAAAAAATGCTTG  428
             ||||||||||| |||||||||||||  |||||||||||||||||||||| |||| | |||
Sbjct  990   AATGTTACAATGAGCTTGTCTTATATCTCCTATTATGTCACCTGTTGCATAAAACGATTG  931

Query  429   CCCTGGTCCAAGGTGTATACTTTTTCTTGTATTATTATTGGGTCTGGTACAGTTAATTTC  488
              |||||||||| ||||||||||||||||||||| |||| ||||||||||||  |||| | 
Sbjct  930   TCCTGGTCCAATGTGTATACTTTTTCTTGTATTGTTATAGGGTCTGGTACATGTAATGTT  871

Query  489   TACAGACTGATTAAACTGCACTATTATGGTTTTGGTATTGTCTGTAATG  537
             |||||  ||||||| |||||||||||||||||||||||||||||| |||
Sbjct  870   TACAGCTTGATTAAGCTGCACTATTATGGTTTTGGTATTGTCTGTGATG  822

Download GenBank Graphics Next Previous Descriptions

HIV-1 isolate 06.RU.SP-SC1283.VI.2A12 from Russia envelope glycoprotein (env) gene, complete cds

Sequence ID: GU481601.1Length: 2520Number of Matches: 1

Range 1: 822 to 1344GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
647 bits(350)	2e-180()	471/529(89%)	9/529(1%)	Plus/Minus

Query  12    AGTGTTATTACCTCCCTTAGACGACCCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGA  71
             ||| ||||||| | ||||||||   |||||||||||||||||||||||||||||||||||
Sbjct  1344  AGTTTTATTACTTTCCTTAGAC---CCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGA  1288

Query  72    TCTACATGTAATGATTCCTGCAATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCA  131
             | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1287  TGTACATGTAATGTTTCCTGCAATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCA  1228

Query  132   CATTCTTACAATTTGTCTTATTTTACATGGGAGTTTGATAATAGTCCCATTATTTTTTGA  191
             |||||||||||||||||||||||||||||||||| |||||   ||||||||| || ||||
Sbjct  1227  CATTCTTACAATTTGTCTTATTTTACATGGGAGTGTGATA---GTCCCATTACTTATTGA  1171

Query  192   TGAGCTATTAAACAGGTCTGATGTATTACAGTAGAAAAATTCTCCTCCACAATTAAAAGT  251
             |||| |||||||||| | |||||||||||| ||||||||||||||||||||||||||| |
Sbjct  1170  TGAGTTATTAAACAGTTGTGATGTATTACAATAGAAAAATTCTCCTCCACAATTAAAACT  1111

Query  252   ATGTGTTATAATTTCTAGGTCCCCTCCTGCTGATGACTTAAAGGATATGTTCCCA---GG  308
             ||||||| |||||||||||||||||||||| | ||||| ||||| |||||||  |   ||
Sbjct  1110  ATGTGTTGTAATTTCTAGGTCCCCTCCTGCCGGTGACTCAAAGGTTATGTTCTTATTAGG  1051

Query  309   AAAGAATTCCTTTAGTTTTGCTTTCACCTTATTTAACATATCGTCCCATTTATCTCCACT  368
             |||| |||||||||||||| || ||||||||| || | | || | |||||| ||||||||
Sbjct  1050  AAAGGATTCCTTTAGTTTTTCTGTCACCTTATGTATCGTCTCATTCCATTTTTCTCCACT  991

Query  369   AATGTTACAATAAGCTTGTCTTATACTTCCTATTATGTCACCTGTTGCAAAAAATGCTTG  428
             ||||||||||| |||||||||||||  |||||||||| ||||||||||| |||| | |||
Sbjct  990   AATGTTACAATGAGCTTGTCTTATATCTCCTATTATGGCACCTGTTGCATAAAACGATTG  931

Query  429   CCCTGGTCCAAGGTGTATACTTTTTCTTGTATTATTATTGGGTCTGGTACAGTTAATTTC  488
              |||||||||| ||||||||||||||||||||| |||| ||||||||||||  |||| | 
Sbjct  930   TCCTGGTCCAATGTGTATACTTTTTCTTGTATTGTTATAGGGTCTGGTACATGTAATGTT  871

Query  489   TACAGACTGATTAAACTGCACTATTATGGTTTTGGTATTGTCTGTAATG  537
             |||||  ||||||| |||||||||||||||||||||||||||||| |||
Sbjct  870   TACAGCTTGATTAAGCTGCACTATTATGGTTTTGGTATTGTCTGTGATG  822

Download GenBank Graphics Next Previous Descriptions

HIV-1 isolate 06.RU.SP-SC1283.VI.2A5 from Russia envelope glycoprotein (env) gene, complete cds

Sequence ID: GU481613.1Length: 2541Number of Matches: 1

Range 1: 822 to 1325GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
643 bits(348)	2e-179()	455/507(90%)	6/507(1%)	Plus/Minus

Query  34    GACCCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGATCTACATGTAATGATTCCTGCA  93
             ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct  1325  GACCCATCTCTTGTTAATAGTAGTCCTGTAATGTTTGATGTACATGTAATGTTTCCTGCA  1266

Query  94    ATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCACATTCTTACAATTTGTCTTATT  153
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1265  ATGGGAGGGGCATACATTGCTTGTGCTACTCTTTGCCACATTCTTACAATTTGTCTTATT  1206

Query  154   TTACATGGGAGTTTGATAATAGTCCCATTATTTTTTGATGAGCTATTAAACAGGTCTGAT  213
             |||||||||||| |||||||   ||||||| || |||||||| |||||||||| | ||||
Sbjct  1205  TTACATGGGAGTGTGATAAT---CCCATTACTTATTGATGAGTTATTAAACAGTTGTGAT  1149

Query  214   GTATTACAGTAGAAAAATTCTCCTCCACAATTAAAAGTATGTGTTATAATTTCTAGGTCC  273
             |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  1148  GTATTACAATAGAAAAATTCTCCTCCACAATTAAAACTATGTGTTGTAATTTCTAGGTCC  1089

Query  274   CCTCCTGCTGATGACTTAAAGGATATGTTCCCA---GGAAAGAATTCCTTTAGTTTTGCT  330
             |||||||| | ||||| ||||| |||| ||| |   |||||| |||||||||||||| ||
Sbjct  1088  CCTCCTGCCGGTGACTCAAAGGTTATGGTCCTATTAGGAAAGGATTCCTTTAGTTTTTCT  1029

Query  331   TTCACCTTATTTAACATATCGTCCCATTTATCTCCACTAATGTTACAATAAGCTTGTCTT  390
              ||||||||| || | | || | |||||| ||||||||||||||||||| ||||||||||
Sbjct  1028  GTCACCTTATGTATCGTCTCATTCCATTTTTCTCCACTAATGTTACAATGAGCTTGTCTT  969

Query  391   ATACTTCCTATTATGTCACCTGTTGCAAAAAATGCTTGCCCTGGTCCAAGGTGTATACTT  450
             |||  |||||||||| ||||||||||| |||| | ||| |||||||||| ||||||||||
Sbjct  968   ATATCTCCTATTATGGCACCTGTTGCATAAAACGATTGTCCTGGTCCAATGTGTATACTT  909

Query  451   TTTCTTGTATTATTATTGGGTCTGGTACAGTTAATTTCTACAGACTGATTAAACTGCACT  510
             ||||||||||| |||| ||||||||||||  |||| | |||||  ||||||| |||||||
Sbjct  908   TTTCTTGTATTGTTATAGGGTCTGGTACATGTAATGTTTACAGCTTGATTAAGCTGCACT  849

Query  511   ATTATGGTTTTGGTATTGTCTGTAATG  537
             ||||||||||||||||||||||| |||
Sbjct  848   ATTATGGTTTTGGTATTGTCTGTGATG  822

Taxonomy

100 sequences selected
Help

Lineage

Lineage Report
Organism	Blast Name	Score	Number of Hits	Description
Lentivirus	viruses		101
.Human immunodeficiency virus 1	viruses	699	98	Human immunodeficiency virus 1 hits
.HIV-1 06TG.HT112	viruses	520	1	HIV-1 06TG.HT112 hits
.HIV-1 06TG.HT048	viruses	449	1	HIV-1 06TG.HT048 hits
.HIV-1 06TG.HT129	viruses	433	1	HIV-1 06TG.HT129 hits

Organism

Organism Report
Description	Score	E value	Accession
Human immunodeficiency virus 1 [viruses] Next Previous First
HIV-1 isolate EST2001-163 from Estonia envelope glycoprotein (env) gene, complete cds	699	0.0	AY812751
HIV-1 isolate EE0369 from Estonia, complete genome	682	0.0	AY535660
HIV-1 isolate 06.RU.SP-SC1283.VI.2B5 from Russia envelope glycoprotein (env) gene, complete cds	654	0.0	GU481600
HIV-1 isolate 06.RU.SP-SC1283.VI.A10 from Russia envelope glycoprotein (env) gene, complete cds	652	0.0	GU481598
HIV-1 isolate 06.RU.SP-SC1283.VI.E3 from Russia envelope glycoprotein (env) gene, complete cds	649	0.0	GU481605
HIV-1 isolate 06.RU.SP-SC1283.VI.F10 from Russia envelope glycoprotein (env) gene, complete cds	649	0.0	GU481595
HIV-1 isolate 06.RU.SP-SC1283.VI.2G5 from Russia nonfunctional envelope glycoprotein (env) gene, complete sequence	647	2e-180	GU481607
HIV-1 isolate 06.RU.SP-SC1283.VI.2G7 from Russia envelope glycoprotein (env) gene, complete cds	647	2e-180	GU481602
HIV-1 isolate 06.RU.SP-SC1283.VI.2A12 from Russia envelope glycoprotein (env) gene, complete cds	647	2e-180	GU481601
HIV-1 isolate 06.RU.SP-SC1283.VI.2A5 from Russia envelope glycoprotein (env) gene, complete cds	643	2e-179	GU481613
HIV-1 isolate 06.RU.SP-SC1283.VI.2B11 from Russia envelope glycoprotein (env) gene, complete cds	643	2e-179	GU481612
HIV-1 isolate 06.RU.SP-SC1283.VI.B4 from Russia nonfunctional envelope glycoprotein (env) gene, complete sequence	643	2e-179	GU481611
HIV-1 isolate 06.RU.SP-SC1283.VI.2D11 from Russia envelope glycoprotein (env) gene, complete cds	643	2e-179	GU481610
HIV-1 isolate 06.RU.SP-SC1283.VI.B3 from Russia envelope glycoprotein (env) gene, complete cds	643	2e-179	GU481609
HIV-1 isolate 06.RU.SP-SC1283.VI.G5 from Russia envelope glycoprotein (env) gene, complete cds	643	2e-179	GU481606
HIV-1 isolate 06.RU.SP-SC1283.VI.2C12 from Russia envelope glycoprotein (env) gene, complete cds	643	2e-179	GU481604
HIV-1 isolate 06.RU.SP-SC1283.VI.B7 from Russia envelope glycoprotein (env) gene, complete cds	643	2e-179	GU481603
HIV-1 isolate 06.RU.SP-SC1283.VI.2E11 from Russia envelope glycoprotein (env) gene, complete cds	643	2e-179	GU481593
HIV-1 isolate 06.RU.SP-SC1283.VI.2D6 from Russia nonfunctional envelope glycoprotein (env) gene, complete sequence	643	2e-179	GU481592
HIV-1 isolate 06.RU.SP-SC1283.VI.E5 from Russia envelope glycoprotein (env) gene, complete cds	641	8e-179	GU481599
HIV-1 isolate 06.RU.SP-SC1283.VI.D5 from Russia envelope glycoprotein (env) gene, complete cds	638	1e-177	GU481614
HIV-1 isolate 06.RU.SP-SC1283.VI.2A1 from Russia envelope glycoprotein (env) gene, complete cds	638	1e-177	GU481608
HIV-1 isolate 06.RU.SP-SC1283.VI.2B12 from Russia envelope glycoprotein (env) gene, complete cds	638	1e-177	GU481597
HIV-1 isolate 06.RU.SP-SC1283.VI.F1 from Russia envelope glycoprotein (env) gene, complete cds	638	1e-177	GU481596
HIV-1 isolate 06.RU.SP-SC1283.VI.2H1 from Russia envelope glycoprotein (env) gene, complete cds	638	1e-177	GU481594
HIV-1 isolate 06.RU.SP-SC1283.VI.2A6 from Russia envelope glycoprotein (env) gene, complete cds	638	1e-177	GU481591
HIV-1 isolate A45 from Estonia gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	628	6e-175	KM606635
HIV-1 isolate EST2002-1169 from Estonia gag protein (gag) gene, complete cds; aberrant pol protein (pol) gene, partial cds; truncated vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds	616	5e-171	DQ167215
HIV-1 isolate 04RU001 from Russia, complete genome	608	8e-169	DQ400856
HIV-1 isolate 69 from Estonia pol protein (pol) gene, partial cds; vif protein (vif) gene, complete cds; nonfunctional vpr protein (vpr) gene, complete sequence; and tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	603	4e-167	KM606629
HIV-1 isolate A19 from Estonia gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	597	2e-165	KM606633
HIV-1 isolate A13 from Estonia nonfunctional gag protein (gag) gene, complete sequence; nonfunctional pol protein (pol) gene, partial sequence; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	569	4e-157	KM606631
HIV-1 isolate EE0359 from Estonia, complete genome	560	2e-154	AY535659
HIV-1 isolate 41 from Estonia pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; nonfunctional env protein (env) gene, complete sequence; and nef protein (nef) gene, complete cds	549	5e-151	KM606628
HIV-1 isolate 93JBJ6-19157 from South Korea envelope glycoprotein (env) gene, complete cds	534	1e-146	OR327419
HIV-1 isolate 06CMARC13 from Cameroon, complete genome	532	5e-146	MN153481
HIV-1 isolate 93JBJ6-19158 from South Korea envelope glycoprotein (env) gene, complete cds	529	6e-145	OR327420
HIV-1 isolate 16NSN1-19081 from South Korea envelope glycoprotein (env) gene, complete cds	516	5e-141	OR327257
HIV-1 isolate 1656.p21 from Senegal envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds	510	2e-139	HM215265
Human immunodeficiency virus type 1 complete proviral genome, strain 95ML127 (form Mali)	501	1e-136	AJ288982
Human immunodeficiency virus type 1 proviral partial env gene for gp120, strain 97NE32	499	5e-136	AJ429827
HIV-1 isolate NG3670 from Nigeria, envelope glycoprotein (env) gene, complete cds	499	5e-136	AF069934
HIV-1 isolate A49 from Estonia gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	494	2e-134	KM606637
Human immunodeficiency virus type 1 proviral complete genome, isolate 95ML84	494	2e-134	AJ245481
HIV-1 isolate 16NSN1-19082 from South Korea envelope glycoprotein (env) gene, complete cds	488	1e-132	OR327258
Human immunodeficiency virus type 1 proviral partial env gene for gp120, strain 97NE50	481	2e-130	AJ429838
HIV-1 isolate 07JSE5-19540 from South Korea envelope glycoprotein (env) gene, complete cds; and nef protein (nef) gene, partial cds	479	7e-130	PQ809491
HIV-1 isolate 16NSN1-19080/14627 from South Korea envelope glycoprotein (env) and nef protein (nef) genes, complete cds	477	2e-129	OR327256
Human immunodeficiency virus type 1 proviral partial env gene for gp120 protein, V3V5 sequence, isolate 97CM.K1068	473	3e-128	AJ554972
Human immunodeficiency virus type 1 proviral partial env gene for gp120, strain 00NE055	472	1e-127	AJ429892
Human immunodeficiency virus type 1 complete proviral genome, isolate 00NE95	470	4e-127	AJ508596
Human immunodeficiency virus type 1 genome, A/G/J complex recombinant	468	1e-126	AJ293865
HIV-1 isolate 16092 from Spain envelope glycoprotein (env) gene, partial cds	468	1e-126	AF466206
Human immunodeficiency virus 1 proviral DNA, complete genome, clone: pPRD320-16G41	464	2e-125	AB485662
HIV-1 isolate 21JIG7-19206 from South Korea envelope glycoprotein (env) gene, complete cds	462	7e-125	OR327366
HIV-1 clone D042 from Burkina Faso envelope glycoprotein (env) gene, partial cds	459	9e-124	DQ645291
HIV-1 clone D008 from Burkina Faso envelope glycoprotein (env) gene, partial cds	459	9e-124	DQ645286
HIV-1 isolate 07JIG5-19077/3426 from South Korea envelope glycoprotein (env) and nef protein (nef) genes, complete cds	457	3e-123	OR327363
HIV-1 isolate K018_plasma1 from Ghana envelope glycoprotein (env) gene, partial cds	455	1e-122	GU573779
Human immunodeficiency virus 1 proviral env gene for envelope protein, isolate 97CM.MP801	455	1e-122	AM279346
HIV-1 99CMLB11 from Cameroon envelope glycoprotein (env) gene, partial cds	455	1e-122	AF355326
Human immunodeficiency virus type 1 proviral partial env gene for gp120 protein, V3V5 sequence, isolate 97CM.MP801	455	1e-122	AJ554893
HIV-1 isolate LA13BF17 from Burkina Faso, complete genome	453	4e-122	KU168268
Human immunodeficiency virus type 1 proviral partial env gene for gp120 protein, strain 00TCD.3028	451	1e-121	AJ490801
Human immunodeficiency virus type 1 proviral partial env gene for gp120, strain 00NE095	448	2e-120	AJ429915
Human immunodeficiency virus 1 proviral DNA, complete genome, clone: pPRD320-16G46	446	7e-120	AB485663
HIV-1 isolate D291 from Burkina Faso envelope glycoprotein (env) gene, partial cds	446	7e-120	AY346008
Human immunodeficiency virus type 1 partial proviral env gene, isolate SE-40HPD	446	7e-120	AJ245486
Human immunodeficiency virus type 1 proviral partial env gene for gp120, isolate 98SE-40HPD	446	7e-120	AJ272640
HIV-1 isolate HH8793 clone 1.1 from Finland, complete genome	446	7e-120	AF061640
Human immunodeficiency virus type 1 proviral partial env gene for gp120, strain 97NE01	444	2e-119	AJ429810
HIV-1 isolate RU_ShRMT_1989 from Russia, complete genome	442	9e-119	MF614605
HIV-1 RU107D from Russia, gp120 V3-V5 region (env) gene, partial cds	440	3e-118	U08363
HIV-1 isolate 21JIG7-19210 from South Korea envelope glycoprotein (env) gene, complete cds	438	1e-117	OR327364
HIV-1 isolate 09YYH2-19205 from South Korea envelope glycoprotein (env) gene, complete cds	438	1e-117	OR327325
Human immunodeficiency virus type 1 proviral partial env gene for gp120, isolate 97SE-1078	438	1e-117	AJ272644
Human immunodeficiency virus type 1 partial proviral env gene, isolate SE-1078	438	1e-117	AJ245485
HIV-1 isolate 07JSE5-19541 from South Korea envelope glycoprotein (env) gene, partial cds	435	1e-116	PQ809492
Human immunodeficiency virus type 1 proviral partial env gene for envelope glycoprotein gp120, strain G_97DC.KFE181	435	1e-116	AJ404037
Human immunodeficiency virus type 1 partial env gene for exterior membrane protein gp120, isolate 96NG-CSW46	435	1e-116	AJ389730
HIV-1 RU104 from Russia, gp120 V3-V5 region (env) gene, partial cds	435	1e-116	U08358
HIV-1 isolate 13JSE7-19545 from South Korea envelope glycoprotein (env) gene, complete cds	433	5e-116	PQ809496
HIV-1 isolate 93LMS1-19108/16090 from South Korea envelope glycoprotein (env) and nef protein (nef) genes, complete cds	433	5e-116	OR327345
HIV-1 isolate 12YYH7-19074/10355 from South Korea envelope glycoprotein (env) and nef protein (nef) genes, complete cds	433	5e-116	OR327321
HIV-1 isolate 01NGPL0669 from Nigeria gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds	431	2e-115	DQ168576
HIV-1 subject MIH95 from Senegal envelope glycoprotein (env) gene, partial cds	429	7e-115	AY249787
HIV-1 RU509 gp120 V3-V5 region (env) gene, partial cds	429	7e-115	U08365
HIV-1 RU105 from Russia, gp120 V3-V5 region (env) gene, partial cds	429	7e-115	U08359
HIV-1 isolate 13JSE7-19075/10347 from South Korea envelope glycoprotein (env) and nef protein (nef) genes, complete cds	427	2e-114	OR327359
Human immunodeficiency virus type 1 proviral partial env gene for exterior membrane glycoprotein gp120, patient 98CG867	427	2e-114	AJ630562
Human immunodeficiency virus type 1 proviral partial env gene for polyprotein, isolate CgARV41env	427	2e-114	AM086519
HIV-1 isolate H01_3324 from Kenya envelope glycoprotein (env) gene, partial cds	425	9e-114	FJ346506
HIV-1 isolate EST2002-1150 from Estonia envelope glycoprotein (env) gene, partial cds	425	9e-114	AY755086
HIV-1 isolate EST2001-1132 from Estonia envelope glycoprotein (env) gene, partial cds	425	9e-114	AY754974
HIV-1 isolate EST2001-1279 from Estonia envelope glycoprotein (env) gene, partial cds	425	9e-114	AY754973
HIV-1 isolate EST2001-164 from Estonia envelope glycoprotein (env) gene, partial cds	425	9e-114	AY754966
HIV-1 isolate EST2001-1271 from Estonia envelope glycoprotein (env) gene, partial cds	425	9e-114	AY754962
HIV-1 RU103A from Russia, gp120 V3-V5 region (env) gene, partial cds	425	9e-114	U08355
HIV-1 06TG.HT112 [viruses] Next Previous First
HIV-1 06TG.HT112 partial env gene for envelope glycoprotein gp160 precursor, surface protein region, genomic RNA, strain 06TG.HT112	520	4e-142	FM955802
HIV-1 06TG.HT048 [viruses] Next Previous First
HIV-1 06TG.HT048 partial env gene for envelope glycoprotein gp160 precursor, surface protein region, genomic RNA, strain 06TG.HT048	449	5e-121	FM955770
HIV-1 06TG.HT129 [viruses] Next Previous First
HIV-1 06TG.HT129 partial env gene for envelope glycoprotein gp160 precursor, surface protein region, genomic RNA, strain 06TG.HT129	433	5e-116	FM955812

Taxonomy

Taxonomy Report
Taxonomy	Number of hits	Number of Organisms	Description
Lentivirus	101	4
. Human immunodeficiency virus 1	98	4	Human immunodeficiency virus 1 hits
.. HIV-1 unknown group	3	3
... HIV-1 06TG.HT112	1	1	HIV-1 06TG.HT112 hits
... HIV-1 06TG.HT048	1	1	HIV-1 06TG.HT048 hits
... HIV-1 06TG.HT129	1	1	HIV-1 06TG.HT129 hits

Filter Results

Sequences producing significant alignments