(cache)NCBI Blast:SRB29301.1

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Search Parameters
Search parameter name	Search parameter value
Program	blastp
Word size	5
Expect value	0.05
Hitlist size	250
Gapcosts	11,1
Matrix	BLOSUM62
Filter string	F
Genetic Code	1
Window Size	40
Threshold	0
Composition-based stats	2

Database
Database parameter name	Database parameter value
Posted date	Jan 15, 2025 3:54 AM
Number of letters	145,662,075,101
Number of sequences	379,168,219
Entrez query	Includes: Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	0.319305	0.267
K	0.134898	0.041
H	0.40808	0.14
Alpha	0.7916	1.9
Alpha_v	4.96466	42.6028
Sigma		43.6362

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Job Title

SRB29301.1 ...

RID

TFB8R8MA016 Search expires on 01-28 22:58 pm

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Results for

Program

BLASTP

Citation
Reference
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference - compositional score matrix adjustment
Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Database

refseq_protein

See details

Query ID

SRB29301.1

Description

Integrase core domain [Escherichia coli] ...

Molecule type

amino acid

Query Length

267

Other reports

Distance tree of results Multiple alignment MSA viewer

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Descriptions

select all
100 sequences selected

, Reading indexes 1-5, displaying indexes 1-5, Reading indexes 6-10

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq ref\|NP_705928.1\|	integrase [Human immunodeficiency virus 1]	Human immunodeficiency virus 1	NA	11676	508	508	100%	0.0	90.64%	288	NP_705928.1
2Select seq ref\|NP_789740.1\|	Pol [Human immunodeficiency virus 1]	Human immunodeficiency virus 1	NA	11676	510	510	100%	9e-172	90.64%	995	NP_789740.1
3Select seq ref\|NP_057849.4\|	Gag-Pol [Human immunodeficiency virus 1]	Human immunodeficiency virus 1	NA	11676	511	511	100%	9e-168	90.64%	1435	NP_057849.4
4Select seq ref\|NP_758887.1\|	pol protein [Simian immunodeficiency virus SIV-mnd 2]	Simian immunodeficiency virus SIV-mnd 2	NA	159122	376	376	97%	7e-120	69.23%	1010	NP_758887.1
5Select seq ref\|WP_255430286.1\|	DDE-type integrase/transposase/recombinase [Saccharothrix mutabilis]	Saccharothrix mutabilis	NA	33921	355	355	69%	4e-117	90.16%	513	WP_255430286.1
6Select seq ref\|NP_687035.1\|	Gag-Pol [Simian immunodeficiency virus]	Simian immunodeficiency virus	NA	11723	357	357	96%	6e-110	64.59%	1472	NP_687035.1
7Select seq ref\|NP_663784.1\|	gag-pol fusion polyprotein [Human immunodeficiency virus 2]	Human immunodeficiency virus 2	NA	11709	314	314	94%	4e-94	57.77%	1550	NP_663784.1
8Select seq ref\|NP_040973.1\|	pol polyprotein [Feline immunodeficiency virus]	Feline immunodeficiency virus	NA	11673	177	177	97%	2e-46	36.98%	996	NP_040973.1
9Select seq ref\|YP_009507791.1\|	pol polyprotein [Puma lentivirus 14]	Puma lentivirus 14	NA	32615	172	172	88%	1e-44	37.66%	1086	YP_009507791.1
10Select seq ref\|NP_042683.1\|	gag-pol precursor [Jembrana disease virus]	Jembrana disease virus	NA	36370	166	166	93%	1e-42	38.10%	1432	NP_042683.1
11Select seq ref\|NP_040563.1\|	reverse transcriptase [Bovine immunodeficiency virus]	Bovine immunodeficiency virus	NA	11657	151	151	93%	2e-37	35.89%	1056	NP_040563.1
12Select seq ref\|NP_056902.1\|	pol polyprotein [Equine infectious anemia virus]	Equine infectious anemia virus	NA	11665	149	149	93%	2e-36	36.29%	1138	NP_056902.1
13Select seq ref\|YP_009268869.1\|	pol protein [Ovine lentivirus]	Ovine lentivirus	NA	11663	131	131	91%	2e-30	34.39%	1086	YP_009268869.1
14Select seq ref\|NP_040840.1\|	pol polyprotein [Visna-maedi virus]	Visna-maedi virus	NA	2169971	126	126	90%	8e-29	32.17%	1101	NP_040840.1
15Select seq ref\|XP_012892228.1\|	PREDICTED: endogenous retrovirus group K member 11 Pol protein-like [Dipodomys ordii]	Dipodomys ordii	Ord's kangaroo rat	10020	93.6	93.6	88%	2e-17	30.59%	783	XP_012892228.1
16Select seq ref\|NP_040939.1\|	pol protein [Caprine arthritis encephalitis virus]	Caprine arthritis encephalitis virus	NA	11660	92.8	92.8	91%	4e-17	26.77%	1105	NP_040939.1
17Select seq ref\|XP_017174599.2\|	agouti-signaling protein isoform X1 [Mus musculus]	Mus musculus	house mouse	10090	87.8	87.8	96%	2e-15	27.54%	819	XP_017174599.2
18Select seq ref\|XP_016055824.1\|	PREDICTED: LOW QUALITY PROTEIN: endogenous retrovirus group K member 9 Pol protein-like [Miniopterus natalensis]	Miniopterus natalensis	NA	291302	86.7	86.7	98%	5e-15	26.45%	1795	XP_016055824.1
19Select seq ref\|XP_051833373.1\|	uncharacterized protein LOC127549414 [Antechinus flavipes]	Antechinus flavipes	yellow-footed antechinus	38775	86.7	86.7	88%	5e-15	28.06%	1607	XP_051833373.1
20Select seq ref\|XP_016065270.1\|	PREDICTED: LOW QUALITY PROTEIN: endogenous retrovirus group K member 9 Pol protein-like [Miniopterus natalensis]	Miniopterus natalensis	NA	291302	86.3	86.3	98%	7e-15	26.45%	1801	XP_016065270.1
21Select seq ref\|XP_016062991.1\|	PREDICTED: LOW QUALITY PROTEIN: endogenous retrovirus group K member 9 Pol protein-like [Miniopterus natalensis]	Miniopterus natalensis	NA	291302	85.9	85.9	98%	8e-15	26.45%	1754	XP_016062991.1
22Select seq ref\|XP_016077452.1\|	PREDICTED: LOW QUALITY PROTEIN: endogenous retrovirus group K member 18 Pol protein-like [Miniopterus natalensis]	Miniopterus natalensis	NA	291302	85.9	85.9	98%	9e-15	26.45%	1253	XP_016077452.1
23Select seq ref\|XP_016072395.1\|	PREDICTED: LOW QUALITY PROTEIN: endogenous retrovirus group K member 18 Pol protein-like [Miniopterus natalensis]	Miniopterus natalensis	NA	291302	85.5	85.5	98%	1e-14	26.45%	1076	XP_016072395.1
24Select seq ref\|XP_056670689.1\|	uncharacterized protein LOC130456936 [Monodelphis domestica]	Monodelphis domestica	gray short-tailed opossum	13616	84.3	84.3	88%	3e-14	30.86%	895	XP_056670689.1
25Select seq ref\|XP_012879155.1\|	PREDICTED: endogenous retrovirus group K member 8 Pol protein-like [Dipodomys ordii]	Dipodomys ordii	Ord's kangaroo rat	10020	83.2	83.2	88%	3e-14	29.92%	350	XP_012879155.1
26Select seq ref\|XP_043745771.1\|	LOW QUALITY PROTEIN: uncharacterized protein LOC122685248 [Cervus elaphus]	Cervus elaphus	red deer	9860	84.0	84.0	90%	4e-14	29.57%	1198	XP_043745771.1
27Select seq ref\|XP_010854994.1\|	PREDICTED: uncharacterized protein LOC105000701 [Bison bison bison]	Bison bison bison	NA	43346	83.6	83.6	87%	6e-14	27.24%	998	XP_010854994.1
28Select seq ref\|XP_027377397.1\|	uncharacterized protein LOC113879794 [Bos indicus x Bos taurus]	Bos indicus x Bos taurus	hybrid cattle	30522	82.4	82.4	87%	1e-13	27.64%	997	XP_027377397.1
29Select seq ref\|XP_063109224.1\|	endogenous retrovirus group K member 8 Pol protein isoform X1 [Cavia porcellus]	Cavia porcellus	domestic guinea pig	10141	80.9	80.9	61%	3e-13	30.68%	694	XP_063109224.1
30Select seq ref\|YP_009305201.1\|	pol protein [Simian retrovirus 8]	Simian retrovirus 8	NA	1904439	80.5	80.5	92%	5e-13	29.17%	866	YP_009305201.1
31Select seq ref\|XP_052616418.1\|	KRAB-A domain-containing protein 2 [Peromyscus californicus insignis]	Peromyscus californicus insignis	NA	564181	78.6	78.6	61%	5e-13	32.97%	275	XP_052616418.1
32Select seq ref\|XP_056676955.1\|	LOW QUALITY PROTEIN: uncharacterized protein LOC130458065 [Monodelphis domestica]	Monodelphis domestica	gray short-tailed opossum	13616	80.5	80.5	88%	6e-13	30.47%	1105	XP_056676955.1
33Select seq ref\|XP_063107498.1\|	pyridoxine-5'-phosphate oxidase isoform X1 [Cavia porcellus]	Cavia porcellus	domestic guinea pig	10141	80.1	80.1	61%	6e-13	30.68%	612	XP_063107498.1
34Select seq ref\|XP_012892095.1\|	PREDICTED: uncharacterized protein LOC106001575 [Dipodomys ordii]	Dipodomys ordii	Ord's kangaroo rat	10020	80.1	80.1	91%	7e-13	25.48%	1037	XP_012892095.1
35Select seq ref\|XP_060240691.1\|	endogenous retrovirus group K member 19 Pol protein isoform X1 [Meriones unguiculatus]	Meriones unguiculatus	Mongolian gerbil	10047	78.2	78.2	88%	9e-13	27.20%	302	XP_060240691.1
36Select seq ref\|XP_055463812.1\|	LOW QUALITY PROTEIN: uncharacterized protein LOC129677169 [Psammomys obesus]	Psammomys obesus	fat sand rat	48139	79.0	79.0	66%	2e-12	30.43%	2047	XP_055463812.1
37Select seq ref\|XP_013917235.1\|	PREDICTED: endogenous retrovirus group K member 11 Pol protein-like [Thamnophis sirtalis]	Thamnophis sirtalis	NA	35019	78.2	78.2	92%	3e-12	26.52%	857	XP_013917235.1
38Select seq ref\|NP_041261.1\|	pol protein [Squirrel monkey retrovirus]	Squirrel monkey retrovirus	NA	11856	77.8	77.8	89%	5e-12	26.77%	798	NP_041261.1
39Select seq ref\|XP_013920191.1\|	PREDICTED: endogenous retrovirus group K member 11 Pol protein-like [Thamnophis sirtalis]	Thamnophis sirtalis	NA	35019	77.8	77.8	92%	5e-12	26.72%	746	XP_013920191.1
40Select seq ref\|XP_069738427.1\|	KRAB-A domain-containing protein 2 [Phaenicophaeus curvirostris]	Phaenicophaeus curvirostris	NA	33595	77.0	77.0	88%	8e-12	28.11%	801	XP_069738427.1
41Select seq ref\|XP_012891485.1\|	PREDICTED: endogenous retrovirus group K member 8 Pol protein-like [Dipodomys ordii]	Dipodomys ordii	Ord's kangaroo rat	10020	77.0	77.0	100%	9e-12	24.11%	653	XP_012891485.1
42Select seq ref\|XP_014816033.1\|	PREDICTED: endogenous retrovirus group K member 8 Pol protein-like [Calidris pugnax]	Calidris pugnax	ruff	198806	75.1	75.1	92%	9e-12	26.64%	275	XP_014816033.1
43Select seq ref\|YP_003864102.1\|	pol protein [Simian retrovirus 4]	Simian retrovirus 4	NA	723802	76.3	76.3	92%	2e-11	27.55%	870	YP_003864102.1
44Select seq ref\|XP_058145900.1\|	uncharacterized protein LOC131276570 [Dasypus novemcinctus]	Dasypus novemcinctus	nine-banded armadillo	9361	76.3	76.3	85%	2e-11	27.46%	930	XP_058145900.1
45Select seq ref\|XP_017653280.1\|	uncharacterized protein LOC108490752 [Nannospalax galili]	Nannospalax galili	Upper Galilee mountains blind mole rat	1026970	75.5	75.5	85%	3e-11	27.73%	1046	XP_017653280.1
46Select seq ref\|XP_032984519.1\|	LOW QUALITY PROTEIN: uncharacterized protein LOC117035007 [Rhinolophus ferrumequinum]	Rhinolophus ferrumequinum	greater horseshoe bat	59479	74.3	74.3	90%	7e-11	27.52%	2159	XP_032984519.1
47Select seq ref\|NP_056891.1\|	RT-IN [Mason-Pfizer monkey virus]	Mason-Pfizer monkey virus	NA	11855	74.3	74.3	92%	9e-11	26.24%	1771	NP_056891.1
48Select seq ref\|XP_017671855.1\|	PREDICTED: endogenous retrovirus group K member 25 Pol protein-like [Lepidothrix coronata]	Lepidothrix coronata	blue-crowned manakin	321398	71.2	71.2	92%	2e-10	25.67%	278	XP_017671855.1
49Select seq ref\|XP_014106443.1\|	PREDICTED: endogenous retrovirus group K member 19 Pol protein-like [Pseudopodoces humilis]	Pseudopodoces humilis	Tibetan ground-tit	181119	72.0	72.0	90%	3e-10	25.40%	635	XP_014106443.1
50Select seq ref\|XP_029082550.1\|	uncharacterized protein LOC114897694 [Monodon monoceros]	Monodon monoceros	narwhal	40151	68.6	68.6	51%	5e-10	33.78%	176	XP_029082550.1
51Select seq ref\|XP_039241784.1\|	uncharacterized protein LOC113993217 [Pipra filicauda]	Pipra filicauda	Wire-tailed manakin	649802	71.2	71.2	93%	8e-10	26.92%	1693	XP_039241784.1
52Select seq ref\|XP_036010831.1\|	contactin-5 isoform X1 [Mus musculus]	Mus musculus	house mouse	10090	70.5	70.5	93%	1e-09	26.22%	1434	XP_036010831.1
53Select seq ref\|XP_036010832.1\|	contactin-5 isoform X2 [Mus musculus]	Mus musculus	house mouse	10090	70.5	70.5	93%	1e-09	26.22%	1409	XP_036010832.1
54Select seq ref\|XP_036010833.1\|	contactin-5 isoform X3 [Mus musculus]	Mus musculus	house mouse	10090	70.5	70.5	93%	1e-09	26.22%	1405	XP_036010833.1
55Select seq ref\|XP_027257768.1\|	protein NYNRIN-like [Cricetulus griseus]	Cricetulus griseus	Chinese hamster	10029	70.1	70.1	61%	1e-09	27.60%	432	XP_027257768.1
56Select seq ref\|XP_032325343.1\|	WD repeat-containing protein 73 isoform X1 [Camelus ferus]	Camelus ferus	Wild Bactrian camel	419612	70.1	70.1	60%	1e-09	27.91%	480	XP_032325343.1
57Select seq ref\|XP_027247589.1\|	protein NYNRIN-like [Cricetulus griseus]	Cricetulus griseus	Chinese hamster	10029	69.7	69.7	61%	2e-09	27.60%	432	XP_027247589.1
58Select seq ref\|XP_017679475.1\|	PREDICTED: endogenous retrovirus group K member 18 Pol protein-like [Lepidothrix coronata]	Lepidothrix coronata	blue-crowned manakin	321398	69.7	69.7	89%	2e-09	25.79%	957	XP_017679475.1
59Select seq ref\|XP_017667885.1\|	PREDICTED: endogenous retrovirus group K member 18 Pol protein-like [Lepidothrix coronata]	Lepidothrix coronata	blue-crowned manakin	321398	68.9	68.9	92%	4e-09	25.29%	957	XP_017667885.1
60Select seq ref\|XP_012581449.1\|	PREDICTED: LOW QUALITY PROTEIN: endogenous retrovirus group K member 8 Pol protein-like [Condylura cristata]	Condylura cristata	star-nosed mole	143302	68.2	68.2	91%	7e-09	25.97%	528	XP_012581449.1
61Select seq ref\|XP_069737375.1\|	uncharacterized protein [Phaenicophaeus curvirostris]	Phaenicophaeus curvirostris	NA	33595	67.8	67.8	91%	8e-09	25.59%	436	XP_069737375.1
62Select seq ref\|XP_012872059.1\|	PREDICTED: endogenous retrovirus group K member 8 Pol protein-like [Dipodomys ordii]	Dipodomys ordii	Ord's kangaroo rat	10020	67.8	67.8	95%	1e-08	22.96%	737	XP_012872059.1
63Select seq ref\|XP_021010498.1\|	LOW QUALITY PROTEIN: uncharacterized protein LOC110288513 [Mus caroli]	Mus caroli	Ryukyu mouse	10089	67.8	67.8	53%	1e-08	31.65%	1706	XP_021010498.1
64Select seq ref\|XP_052597315.1\|	uncharacterized protein LOC128112311 isoform X1 [Peromyscus californicus insignis]	Peromyscus californicus insignis	NA	564181	67.0	67.0	52%	2e-08	33.55%	1072	XP_052597315.1
65Select seq ref\|XP_014117040.1\|	PREDICTED: endogenous retrovirus group K member 8 Pol protein-like [Pseudopodoces humilis]	Pseudopodoces humilis	Tibetan ground-tit	181119	66.6	66.6	90%	2e-08	25.98%	761	XP_014117040.1
66Select seq ref\|XP_057631307.1\|	uncharacterized protein LOC130877762 [Chionomys nivalis]	Chionomys nivalis	European snow vole	269649	66.6	66.6	52%	3e-08	32.90%	650	XP_057631307.1
67Select seq ref\|XP_054545942.1\|	uncharacterized protein LOC129144950 [Talpa occidentalis]	Talpa occidentalis	Iberian mole	50954	66.2	66.2	73%	3e-08	27.32%	443	XP_054545942.1
68Select seq ref\|XP_057646156.1\|	uncharacterized protein LOC130887628 [Chionomys nivalis]	Chionomys nivalis	European snow vole	269649	66.2	66.2	52%	3e-08	32.90%	650	XP_057646156.1
69Select seq ref\|XP_070231011.1\|	LOW QUALITY PROTEIN: endogenous retrovirus group K member 8 Gag polyprotein-like [Bos mutus]	Bos mutus	wild yak	72004	66.2	66.2	78%	3e-08	25.57%	1056	XP_070231011.1
70Select seq ref\|XP_010830931.1\|	PREDICTED: LOW QUALITY PROTEIN: endogenous retrovirus group K member 8 Pol protein-like [Bison bison bison]	Bison bison bison	NA	43346	65.9	65.9	77%	3e-08	26.15%	475	XP_010830931.1
71Select seq ref\|XP_014125095.1\|	uncharacterized protein LOC106629581 [Zonotrichia albicollis]	Zonotrichia albicollis	white-throated sparrow	44394	65.1	65.1	92%	6e-08	26.24%	387	XP_014125095.1
72Select seq ref\|XP_049984075.1\|	uncharacterized protein [Alexandromys fortis]	Alexandromys fortis	reed vole	100897	65.5	65.5	52%	6e-08	32.90%	652	XP_049984075.1
73Select seq ref\|XP_017597389.1\|	PREDICTED: endogenous retrovirus group K member 18 Pol protein-like [Corvus brachyrhynchos]	Corvus brachyrhynchos	American crow	85066	65.5	65.5	92%	6e-08	24.07%	1053	XP_017597389.1
74Select seq ref\|XP_036010828.1\|	uncharacterized protein Gm53480 [Mus musculus]	Mus musculus	house mouse	10090	65.1	65.1	53%	8e-08	31.65%	1697	XP_036010828.1
75Select seq ref\|XP_017586203.1\|	PREDICTED: endogenous retrovirus group K member 25 Pol protein-like [Corvus brachyrhynchos]	Corvus brachyrhynchos	American crow	85066	63.5	63.5	94%	1e-07	25.75%	292	XP_017586203.1
76Select seq ref\|XP_065275705.1\|	endogenous retrovirus group K member 18 Pol protein [Emys orbicularis]	Emys orbicularis	European pond turtle	82168	64.7	64.7	83%	1e-07	24.26%	937	XP_065275705.1
77Select seq ref\|XP_061019800.1\|	uncharacterized protein LOC133071258 isoform X1 [Dama dama]	Dama dama	fallow deer	30532	64.7	64.7	90%	1e-07	25.20%	1507	XP_061019800.1
78Select seq ref\|XP_068052183.1\|	abl interactor 2 isoform X1 [Anomalospiza imberbis]	Anomalospiza imberbis	NA	187417	64.7	64.7	88%	1e-07	24.19%	933	XP_068052183.1
79Select seq ref\|XP_061019834.1\|	endogenous retrovirus group K member 10 Gag polyprotein-like isoform X2 [Dama dama]	Dama dama	fallow deer	30532	64.7	64.7	90%	1e-07	25.20%	1075	XP_061019834.1
80Select seq ref\|NP_862833.2\|	gag-pro-pol fusion [Enzootic nasal tumor virus 2]	Enzootic nasal tumor virus 2	NA	2913605	64.7	64.7	92%	1e-07	24.24%	870	NP_862833.2
81Select seq ref\|XP_021041459.1\|	LOW QUALITY PROTEIN: uncharacterized protein LOC110312285 [Mus caroli]	Mus caroli	Ryukyu mouse	10089	64.7	64.7	53%	1e-07	30.38%	1737	XP_021041459.1
82Select seq ref\|NP_041186.1\|	pol protein [Jaagsiekte sheep retrovirus]	Jaagsiekte sheep retrovirus	NA	11746	64.3	64.3	88%	1e-07	24.80%	777	NP_041186.1
83Select seq ref\|XP_063277335.1\|	LOW QUALITY PROTEIN: uncharacterized protein LOC134563380 [Prinia subflava]	Prinia subflava	tawny-flanked prinia	208062	64.7	64.7	92%	1e-07	24.81%	1345	XP_063277335.1
84Select seq ref\|XP_064458846.1\|	uncharacterized protein K02A2.6-like [Ornithodoros turicata]	Ornithodoros turicata	NA	34597	63.2	63.2	53%	2e-07	28.29%	305	XP_064458846.1
85Select seq ref\|YP_241114.1\|	gap-pro-pol fusion [Ovine enzootic nasal tumor virus]	Ovine enzootic nasal tumor virus	NA	69576	64.3	64.3	90%	2e-07	25.10%	870	YP_241114.1
86Select seq ref\|XP_069246891.1\|	uncharacterized protein VTP21DRAFT_6376 [Calcarisporiella thermophila]	Calcarisporiella thermophila	NA	911321	63.5	63.5	50%	2e-07	30.67%	326	XP_069246891.1
87Select seq ref\|XP_013374464.1\|	PREDICTED: endogenous retrovirus group K member 8 Pol protein-like isoform X1 [Chinchilla lanigera]	Chinchilla lanigera	long-tailed chinchilla	34839	63.9	63.9	53%	2e-07	30.62%	648	XP_013374464.1
88Select seq ref\|XP_064258690.1\|	uncharacterized protein LOC135289182 [Passer domesticus]	Passer domesticus	house sparrow	48849	63.5	63.5	93%	3e-07	23.66%	1726	XP_064258690.1
89Select seq ref\|XP_030039096.2\|	uncharacterized protein K02A2.6 [Manduca sexta]	Manduca sexta	tobacco hornworm	7130	63.2	63.2	73%	3e-07	26.27%	524	XP_030039096.2
90Select seq ref\|XP_017905435.1\|	PREDICTED: LOW QUALITY PROTEIN: endogenous retrovirus group K member 18 Pol protein-like [Capra hircus]	Capra hircus	goat	9925	63.2	63.2	90%	4e-07	25.39%	1153	XP_017905435.1
91Select seq ref\|XP_063098085.1\|	igE-binding protein isoform X1 [Cavia porcellus]	Cavia porcellus	domestic guinea pig	10141	62.4	62.4	60%	4e-07	26.29%	355	XP_063098085.1
92Select seq ref\|XP_038678392.1\|	uncharacterized protein LOC119979836 [Tripterygium wilfordii]	Tripterygium wilfordii	NA	458696	63.2	63.2	53%	4e-07	31.25%	1156	XP_038678392.1
93Select seq ref\|XP_054549213.1\|	uncharacterized protein LOC119239969 [Talpa occidentalis]	Talpa occidentalis	Iberian mole	50954	62.4	62.4	73%	4e-07	25.13%	443	XP_054549213.1
94Select seq ref\|XP_027265461.2\|	LOW QUALITY PROTEIN: uncharacterized protein LOC113835045 [Cricetulus griseus]	Cricetulus griseus	Chinese hamster	10029	63.2	63.2	50%	5e-07	31.08%	1727	XP_027265461.2
95Select seq ref\|XP_021040255.1\|	LOW QUALITY PROTEIN: uncharacterized protein LOC110311355 [Mus caroli]	Mus caroli	Ryukyu mouse	10089	63.2	63.2	50%	5e-07	31.08%	1670	XP_021040255.1
96Select seq ref\|XP_063014162.1\|	uncharacterized protein LOC134419129 [Melospiza melodia melodia]	Melospiza melodia melodia	NA	1914991	63.2	63.2	92%	5e-07	26.24%	1848	XP_063014162.1
97Select seq ref\|XP_038699676.1\|	uncharacterized protein LOC119996970 [Tripterygium wilfordii]	Tripterygium wilfordii	NA	458696	62.8	62.8	53%	5e-07	31.25%	1256	XP_038699676.1
98Select seq ref\|XP_058598889.1\|	uncharacterized protein LOC131519634 [Neofelis nebulosa]	Neofelis nebulosa	Clouded leopard	61452	62.4	62.4	72%	6e-07	26.42%	639	XP_058598889.1
99Select seq ref\|XP_017599759.1\|	PREDICTED: endogenous retrovirus group K member 25 Pol protein-like [Corvus brachyrhynchos]	Corvus brachyrhynchos	American crow	85066	62.0	62.0	61%	6e-07	28.25%	319	XP_017599759.1
100Select seq ref\|XP_038678383.1\|	uncharacterized protein LOC119979828 [Tripterygium wilfordii]	Tripterygium wilfordii	NA	458696	62.8	62.8	53%	6e-07	31.25%	1336	XP_038678383.1

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  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
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Putative conserved domains have been detected, click on the image below for detailed results.

Distribution of the top 100 Blast Hits on 100 subject sequences

Query

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Alignments

100 sequences selected
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integrase [Human immunodeficiency virus 1]

Sequence ID: NP_705928.1Length: 288Number of Matches: 1

See 1 more title(s) See all Identical Proteins(IPG)

Related Information

Gene-associated gene details

Identical Proteins-Identical proteins to NP_705928.1

Range 1: 22 to 288GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
508 bits(1308)	0.0()	Compositional matrix adjust.	242/267(91%)	254/267(95%)	0/267(0%)

Query  1    MASDFNLPPIVAKEIVASCDKCQLKEEATHRQVDCSPGIWQLDCTHLEGKVILVAVHVAS  60
            MASDFNLPP+VAKEIVASCDKCQLK EA H QVDCSPGIWQLDCTHLEGKVILVAVHVAS
Sbjct  22   MASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVAS  81

Query  61   GYIEAEVISAETGQETAYYILKLAGRWPVKVIHTDNGSNFTSTAVKAACWWAGIQQEFRI  120
            GYIEAEVI AETGQETAY++LKLAGRWPVK IHTDNGSNFT   V+AACWWAGI+QEF I
Sbjct  82   GYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACWWAGIKQEFGI  141

Query  121  PYNPQSQRVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERII  180
            PYNPQSQ VVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERI+
Sbjct  142  PYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIV  201

Query  181  DIIATDIQTRELQKQIIQIQNFQVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNSDIKVVP  240
            DIIATDIQT+ELQKQI +IQNF+VYYRDSR+P+WKGPAKLLWKGEGAVVIQDNSDIKVVP
Sbjct  202  DIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAKLLWKGEGAVVIQDNSDIKVVP  261

Query  241  RRKVKIIRDYGKQMAGDDCVAGRQNED  267
            RRK KIIRDYGKQMAGDDCVA RQ+ED
Sbjct  262  RRKAKIIRDYGKQMAGDDCVASRQDED  288

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Pol [Human immunodeficiency virus 1]

Sequence ID: NP_789740.1Length: 995Number of Matches: 1

Related Information

Gene-associated gene details

Range 1: 729 to 995GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
510 bits(1314)	9e-172()	Compositional matrix adjust.	242/267(91%)	254/267(95%)	0/267(0%)

Query  1    MASDFNLPPIVAKEIVASCDKCQLKEEATHRQVDCSPGIWQLDCTHLEGKVILVAVHVAS  60
            MASDFNLPP+VAKEIVASCDKCQLK EA H QVDCSPGIWQLDCTHLEGKVILVAVHVAS
Sbjct  729  MASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVAS  788

Query  61   GYIEAEVISAETGQETAYYILKLAGRWPVKVIHTDNGSNFTSTAVKAACWWAGIQQEFRI  120
            GYIEAEVI AETGQETAY++LKLAGRWPVK IHTDNGSNFT   V+AACWWAGI+QEF I
Sbjct  789  GYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACWWAGIKQEFGI  848

Query  121  PYNPQSQRVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERII  180
            PYNPQSQ VVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERI+
Sbjct  849  PYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIV  908

Query  181  DIIATDIQTRELQKQIIQIQNFQVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNSDIKVVP  240
            DIIATDIQT+ELQKQI +IQNF+VYYRDSR+P+WKGPAKLLWKGEGAVVIQDNSDIKVVP
Sbjct  909  DIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAKLLWKGEGAVVIQDNSDIKVVP  968

Query  241  RRKVKIIRDYGKQMAGDDCVAGRQNED  267
            RRK KIIRDYGKQMAGDDCVA RQ+ED
Sbjct  969  RRKAKIIRDYGKQMAGDDCVASRQDED  995

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Gag-Pol [Human immunodeficiency virus 1]

Sequence ID: NP_057849.4Length: 1435Number of Matches: 1

Related Information

Gene-associated gene details

Range 1: 1169 to 1435GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
511 bits(1316)	9e-168()	Compositional matrix adjust.	242/267(91%)	254/267(95%)	0/267(0%)

Query  1     MASDFNLPPIVAKEIVASCDKCQLKEEATHRQVDCSPGIWQLDCTHLEGKVILVAVHVAS  60
             MASDFNLPP+VAKEIVASCDKCQLK EA H QVDCSPGIWQLDCTHLEGKVILVAVHVAS
Sbjct  1169  MASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVAS  1228

Query  61    GYIEAEVISAETGQETAYYILKLAGRWPVKVIHTDNGSNFTSTAVKAACWWAGIQQEFRI  120
             GYIEAEVI AETGQETAY++LKLAGRWPVK IHTDNGSNFT   V+AACWWAGI+QEF I
Sbjct  1229  GYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACWWAGIKQEFGI  1288

Query  121   PYNPQSQRVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERII  180
             PYNPQSQ VVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERI+
Sbjct  1289  PYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIV  1348

Query  181   DIIATDIQTRELQKQIIQIQNFQVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNSDIKVVP  240
             DIIATDIQT+ELQKQI +IQNF+VYYRDSR+P+WKGPAKLLWKGEGAVVIQDNSDIKVVP
Sbjct  1349  DIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAKLLWKGEGAVVIQDNSDIKVVP  1408

Query  241   RRKVKIIRDYGKQMAGDDCVAGRQNED  267
             RRK KIIRDYGKQMAGDDCVA RQ+ED
Sbjct  1409  RRKAKIIRDYGKQMAGDDCVASRQDED  1435

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pol protein, partial [Simian immunodeficiency virus SIV-mnd 2]

Sequence ID: NP_758887.1Length: 1010Number of Matches: 1

Related Information

Gene-associated gene details

Range 1: 749 to 1008GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
376 bits(966)	7e-120()	Compositional matrix adjust.	180/260(69%)	209/260(80%)	0/260(0%)

Query  1     MASDFNLPPIVAKEIVASCDKCQLKEEATHRQVDCSPGIWQLDCTHLEGKVILVAVHVAS  60
             +A DF +P IVAKEIVA C KCQ K E  H QVD SPG WQ+DCTH+EGKVI+ AVHVAS
Sbjct  749   LAQDFCIPNIVAKEIVAQCPKCQTKGEPIHGQVDTSPGTWQMDCTHMEGKVIIAAVHVAS  808

Query  61    GYIEAEVISAETGQETAYYILKLAGRWPVKVIHTDNGSNFTSTAVKAACWWAGIQQEFRI  120
              Y+EAEVI  ETG+ETA+++LKLAGRWPVK +HTDNG NFTS  V   CWWA I+    I
Sbjct  809   RYLEAEVIPTETGKETAHFLLKLAGRWPVKHLHTDNGPNFTSEKVATVCWWAQIEHTTGI  868

Query  121   PYNPQSQRVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERII  180
             PYNPQSQ V+E+ N  LK+IIGQVRDQAE L+TAVQMAV IHNFKRKGGIG YS GERI+
Sbjct  869   PYNPQSQGVIEAKNHHLKQIIGQVRDQAEKLETAVQMAVLIHNFKRKGGIGEYSPGERIV  928

Query  181   DIIATDIQTRELQKQIIQIQNFQVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNSDIKVVP  240
             DIIATD+ T +LQ  I +IQNF+VYYR+ RD  WKGPA+L+WKGEGAVVI++ +D+KVVP
Sbjct  929   DIIATDLLTTKLQHNIQKIQNFRVYYREGRDQQWKGPAELIWKGEGAVVIKEGTDLKVVP  988

Query  241   RRKVKIIRDYGKQMAGDDCV  260
             RRK KIIRDYGK +  D  V
Sbjct  989   RRKAKIIRDYGKTVDSDPNV  1008

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DDE-type integrase/transposase/recombinase [Saccharothrix mutabilis]

Sequence ID: WP_255430286.1Length: 513Number of Matches: 1

Range 1: 290 to 472GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
355 bits(911)	4e-117()	Compositional matrix adjust.	165/183(90%)	177/183(96%)	0/183(0%)

Query  32   QVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVISAETGQETAYYILKLAGRWPVKV  91
            ++DCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVI AETGQETAY++LKLAGRWPVK 
Sbjct  290  RLDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKT  349

Query  92   IHTDNGSNFTSTAVKAACWWAGIQQEFRIPYNPQSQRVVESMNKELKKIIGQVRDQAEHL  151
            +HTDNGSNFTST VKAACWWAGI+QEF IPYNPQSQ V+ESMNKELKKIIGQVRDQAEHL
Sbjct  350  VHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHL  409

Query  152  KTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQIIQIQNFQVYYRDSRD  211
            KTAVQMAVFIHNFKRKGGIGGYSAGERI+DIIATDIQT+ELQKQI +IQNF+VYYRDSRD
Sbjct  410  KTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRD  469

Query  212  PIW  214
            P+W
Sbjct  470  PVW  472

Loading alignment... for sequences ref|NP_687035.1|,ref|NP_663784.1|,ref|NP_040973.1|,ref|YP_009507791.1|,ref|NP_042683.1| Reading indexes 6-10

Taxonomy

100 sequences selected
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Lineage

Lineage Report
Organism	Blast Name	Score	Number of Hits	Description
root			130
.Orthoretrovirinae	viruses		23
..Lentivirus	viruses		15
...Human immunodeficiency virus 1	viruses	508	4	Human immunodeficiency virus 1 hits
...Simian immunodeficiency virus SIV-mnd 2	viruses	376	1	Simian immunodeficiency virus SIV-mnd 2 hits
...Simian immunodeficiency virus	viruses	357	1	Simian immunodeficiency virus hits
...Human immunodeficiency virus 2	viruses	314	1	Human immunodeficiency virus 2 hits
...Feline immunodeficiency virus	viruses	177	1	Feline immunodeficiency virus hits
...Puma lentivirus 14	viruses	172	1	Puma lentivirus 14 hits
...Jembrana disease virus	viruses	166	1	Jembrana disease virus hits
...Bovine immunodeficiency virus	viruses	151	1	Bovine immunodeficiency virus hits
...Equine infectious anemia virus	viruses	149	1	Equine infectious anemia virus hits
...Ovine lentivirus	viruses	131	1	Ovine lentivirus hits
...Visna-maedi virus	viruses	126	1	Visna-maedi virus hits
...Caprine arthritis encephalitis virus	viruses	92.8	1	Caprine arthritis encephalitis virus hits
..Simian retrovirus 8	viruses	80.5	1	Simian retrovirus 8 hits
..Squirrel monkey retrovirus	viruses	77.8	1	Squirrel monkey retrovirus hits
..Simian retrovirus 4	viruses	76.3	1	Simian retrovirus 4 hits
..Mason-Pfizer monkey virus	viruses	74.3	2	Mason-Pfizer monkey virus hits
..Enzootic nasal tumor virus 2	viruses	64.7	1	Enzootic nasal tumor virus 2 hits
..Jaagsiekte sheep retrovirus	viruses	64.3	1	Jaagsiekte sheep retrovirus hits
..Ovine enzootic nasal tumor virus	viruses	64.3	1	Ovine enzootic nasal tumor virus hits
.Saccharothrix mutabilis	high G+C Gram-positive bacteria	355	1	Saccharothrix mutabilis hits
.Dipodomys ordii	rodents	93.6	5	Dipodomys ordii hits
.Mus musculus	rodents	87.8	14	Mus musculus hits
.Miniopterus natalensis	bats	86.7	5	Miniopterus natalensis hits
.Antechinus flavipes	marsupials	86.7	1	Antechinus flavipes hits
.Monodelphis domestica	marsupials	84.3	2	Monodelphis domestica hits
.Cervus elaphus	even-toed ungulates & whales	84.0	1	Cervus elaphus hits
.Bison bison bison	even-toed ungulates & whales	83.6	2	Bison bison bison hits
.Bos indicus x Bos taurus	even-toed ungulates & whales	82.4	1	Bos indicus x Bos taurus hits
.Cavia porcellus	rodents	80.9	3	Cavia porcellus hits
.Peromyscus californicus insignis	rodents	78.6	13	Peromyscus californicus insignis hits
.Meriones unguiculatus	rodents	78.2	1	Meriones unguiculatus hits
.Psammomys obesus	rodents	79.0	1	Psammomys obesus hits
.Thamnophis sirtalis	snakes	78.2	2	Thamnophis sirtalis hits
.Phaenicophaeus curvirostris	birds	77.0	2	Phaenicophaeus curvirostris hits
.Calidris pugnax	birds	75.1	1	Calidris pugnax hits
.Dasypus novemcinctus	placentals	76.3	1	Dasypus novemcinctus hits
.Nannospalax galili	rodents	75.5	1	Nannospalax galili hits
.Rhinolophus ferrumequinum	bats	74.3	1	Rhinolophus ferrumequinum hits
.Lepidothrix coronata	birds	71.2	3	Lepidothrix coronata hits
.Pseudopodoces humilis	birds	72.0	2	Pseudopodoces humilis hits
.Monodon monoceros	whales & dolphins	68.6	1	Monodon monoceros hits
.Pipra filicauda	birds	71.2	1	Pipra filicauda hits
.Cricetulus griseus	rodents	70.1	4	Cricetulus griseus hits
.Camelus ferus	even-toed ungulates & whales	70.1	1	Camelus ferus hits
.Condylura cristata	insectivores	68.2	1	Condylura cristata hits
.Mus caroli	rodents	67.8	3	Mus caroli hits
.Chionomys nivalis	rodents	66.6	2	Chionomys nivalis hits
.Talpa occidentalis	insectivores	66.2	3	Talpa occidentalis hits
.Bos mutus	even-toed ungulates & whales	66.2	1	Bos mutus hits
.Zonotrichia albicollis	birds	65.1	1	Zonotrichia albicollis hits
.Alexandromys fortis	rodents	65.5	1	Alexandromys fortis hits
.Corvus brachyrhynchos	birds	65.5	3	Corvus brachyrhynchos hits
.Emys orbicularis	turtles	64.7	1	Emys orbicularis hits
.Dama dama	even-toed ungulates & whales	64.7	5	Dama dama hits
.Anomalospiza imberbis	birds	64.7	4	Anomalospiza imberbis hits
.Prinia subflava	birds	64.7	1	Prinia subflava hits
.Ornithodoros turicata	mites & ticks	63.2	1	Ornithodoros turicata hits
.Calcarisporiella thermophila	mucoromycotan fungi	63.5	1	Calcarisporiella thermophila hits
.Chinchilla lanigera	rodents	63.9	1	Chinchilla lanigera hits
.Passer domesticus	birds	63.5	1	Passer domesticus hits
.Manduca sexta	moths	63.2	1	Manduca sexta hits
.Capra hircus	even-toed ungulates & whales	63.2	1	Capra hircus hits
.Tripterygium wilfordii	eudicots	63.2	3	Tripterygium wilfordii hits
.Melospiza melodia melodia	birds	63.2	1	Melospiza melodia melodia hits
.Neofelis nebulosa	carnivores	62.4	1	Neofelis nebulosa hits

Organism

Organism Report
Description	Score	E value	Accession
Human immunodeficiency virus 1 [viruses] Next Previous First
integrase [Human immunodeficiency virus 1]	508	0.0	NP_705928
integrase [Human immunodeficiency virus 1]	508	0.0	YP_001856243
Pol [Human immunodeficiency virus 1]	510	9e-172	NP_789740
Gag-Pol [Human immunodeficiency virus 1]	511	9e-168	NP_057849
Simian immunodeficiency virus SIV-mnd 2 [viruses] Next Previous First
pol protein, partial [Simian immunodeficiency virus SIV-mnd 2]	376	7e-120	NP_758887
Saccharothrix mutabilis [high G+C Gram-positive bacteria] Next Previous First
DDE-type integrase/transposase/recombinase [Saccharothrix mutabilis]	355	4e-117	WP_255430286
Simian immunodeficiency virus [viruses] Next Previous First
Gag-Pol [Simian immunodeficiency virus]	357	6e-110	NP_687035
Human immunodeficiency virus 2 [viruses] Next Previous First
gag-pol fusion polyprotein [Human immunodeficiency virus 2]	314	4e-94	NP_663784
Feline immunodeficiency virus [viruses] Next Previous First
pol polyprotein, partial [Feline immunodeficiency virus]	177	2e-46	NP_040973
Puma lentivirus 14 [viruses] Next Previous First
pol polyprotein [Puma lentivirus 14]	172	1e-44	YP_009507791
Jembrana disease virus [viruses] Next Previous First
gag-pol precursor [Jembrana disease virus]	166	1e-42	NP_042683
Bovine immunodeficiency virus [viruses] Next Previous First
reverse transcriptase, partial [Bovine immunodeficiency virus]	151	2e-37	NP_040563
Equine infectious anemia virus [viruses] Next Previous First
pol polyprotein [Equine infectious anemia virus]	149	2e-36	NP_056902
Ovine lentivirus [viruses] Next Previous First
pol protein, partial [Ovine lentivirus]	131	2e-30	YP_009268869
Visna-maedi virus [viruses] Next Previous First
pol polyprotein [Visna-maedi virus]	126	8e-29	NP_040840
Dipodomys ordii (Ord's kangaroo rat) [rodents] Next Previous First
PREDICTED: endogenous retrovirus group K member 11 Pol protein-like [Dipodomys ordii]	93.6	2e-17	XP_012892228
PREDICTED: endogenous retrovirus group K member 8 Pol protein-like [Dipodomys ordii]	83.2	3e-14	XP_012879155
PREDICTED: uncharacterized protein LOC106001575 [Dipodomys ordii]	80.1	7e-13	XP_012892095
PREDICTED: endogenous retrovirus group K member 8 Pol protein-like [Dipodomys ordii]	77.0	9e-12	XP_012891485
PREDICTED: endogenous retrovirus group K member 8 Pol protein-like [Dipodomys ordii]	67.8	1e-08	XP_012872059
Caprine arthritis encephalitis virus [viruses] Next Previous First
pol protein [Caprine arthritis encephalitis virus]	92.8	4e-17	NP_040939
Mus musculus (house mouse) [rodents] Next Previous First
agouti-signaling protein isoform X1 [Mus musculus]	87.8	2e-15	XP_017174599
agouti-signaling protein isoform X1 [Mus musculus]	87.8	2e-15	XP_017174601
agouti-signaling protein isoform X1 [Mus musculus]	87.8	2e-15	XP_017174604
agouti-signaling protein isoform X1 [Mus musculus]	87.8	2e-15	XP_017174606
agouti-signaling protein isoform X1 [Mus musculus]	87.8	2e-15	XP_017174608
agouti-signaling protein isoform X1 [Mus musculus]	87.8	2e-15	XP_017174609
agouti-signaling protein isoform X1 [Mus musculus]	87.8	2e-15	XP_017174610
agouti-signaling protein isoform X1 [Mus musculus]	87.8	2e-15	XP_030107718
agouti-signaling protein isoform X1 [Mus musculus]	87.8	2e-15	XP_030107719
agouti-signaling protein isoform X1 [Mus musculus]	87.8	2e-15	XP_030107720
contactin-5 isoform X1 [Mus musculus]	70.5	1e-09	XP_036010831
contactin-5 isoform X2 [Mus musculus]	70.5	1e-09	XP_036010832
contactin-5 isoform X3 [Mus musculus]	70.5	1e-09	XP_036010833
uncharacterized protein Gm53480, partial [Mus musculus]	65.1	8e-08	XP_036010828
Miniopterus natalensis [bats] Next Previous First
PREDICTED: LOW QUALITY PROTEIN: endogenous retrovirus group K member 9 Pol protein-like [Miniopterus natalensis]	86.7	5e-15	XP_016055824
PREDICTED: LOW QUALITY PROTEIN: endogenous retrovirus group K member 9 Pol protein-like [Miniopterus natalensis]	86.3	7e-15	XP_016065270
PREDICTED: LOW QUALITY PROTEIN: endogenous retrovirus group K member 9 Pol protein-like [Miniopterus natalensis]	85.9	8e-15	XP_016062991
PREDICTED: LOW QUALITY PROTEIN: endogenous retrovirus group K member 18 Pol protein-like [Miniopterus natalensis]	85.9	9e-15	XP_016077452
PREDICTED: LOW QUALITY PROTEIN: endogenous retrovirus group K member 18 Pol protein-like [Miniopterus natalensis]	85.5	1e-14	XP_016072395
Antechinus flavipes (yellow-footed antechinus) [marsupials] Next Previous First
uncharacterized protein LOC127549414 [Antechinus flavipes]	86.7	5e-15	XP_051833373
Monodelphis domestica (gray short-tailed opossum) [marsupials] Next Previous First
uncharacterized protein LOC130456936 [Monodelphis domestica]	84.3	3e-14	XP_056670689
LOW QUALITY PROTEIN: uncharacterized protein LOC130458065 [Monodelphis domestica]	80.5	6e-13	XP_056676955
Cervus elaphus (red deer) [even-toed ungulates & whales] Next Previous First
LOW QUALITY PROTEIN: uncharacterized protein LOC122685248 [Cervus elaphus]	84.0	4e-14	XP_043745771
Bison bison bison [even-toed ungulates & whales] Next Previous First
PREDICTED: uncharacterized protein LOC105000701 [Bison bison bison]	83.6	6e-14	XP_010854994
PREDICTED: LOW QUALITY PROTEIN: endogenous retrovirus group K member 8 Pol protein-like, partial [Bison bison bison]	65.9	3e-08	XP_010830931
Bos indicus x Bos taurus (hybrid cattle) [even-toed ungulates & whales] Next Previous First
uncharacterized protein LOC113879794 [Bos indicus x Bos taurus]	82.4	1e-13	XP_027377397
Cavia porcellus (domestic guinea pig) [rodents] Next Previous First
endogenous retrovirus group K member 8 Pol protein isoform X1 [Cavia porcellus]	80.9	3e-13	XP_063109224
pyridoxine-5'-phosphate oxidase isoform X1 [Cavia porcellus]	80.1	6e-13	XP_063107498
igE-binding protein isoform X1 [Cavia porcellus]	62.4	4e-07	XP_063098085
Simian retrovirus 8 [viruses] Next Previous First
pol protein, partial [Simian retrovirus 8]	80.5	5e-13	YP_009305201
Peromyscus californicus insignis [rodents] Next Previous First
KRAB-A domain-containing protein 2 [Peromyscus californicus insignis]	78.6	5e-13	XP_052616418
uncharacterized protein LOC128112311 isoform X1 [Peromyscus californicus insignis]	67.0	2e-08	XP_052597315
uncharacterized protein LOC128112311 isoform X1 [Peromyscus californicus insignis]	67.0	2e-08	XP_052597316
uncharacterized protein LOC128112311 isoform X1 [Peromyscus californicus insignis]	67.0	2e-08	XP_052597318
uncharacterized protein LOC128112311 isoform X1 [Peromyscus californicus insignis]	67.0	2e-08	XP_052597319
uncharacterized protein LOC128112311 isoform X1 [Peromyscus californicus insignis]	67.0	2e-08	XP_052597320
uncharacterized protein LOC128112311 isoform X1 [Peromyscus californicus insignis]	67.0	2e-08	XP_052597321
uncharacterized protein LOC128112311 isoform X1 [Peromyscus californicus insignis]	67.0	2e-08	XP_052597322
uncharacterized protein LOC128112311 isoform X1 [Peromyscus californicus insignis]	67.0	2e-08	XP_052597324
uncharacterized protein LOC128112311 isoform X1 [Peromyscus californicus insignis]	67.0	2e-08	XP_052597325
uncharacterized protein LOC128112311 isoform X1 [Peromyscus californicus insignis]	67.0	2e-08	XP_052597326
uncharacterized protein LOC128112311 isoform X1 [Peromyscus californicus insignis]	67.0	2e-08	XP_052597327
uncharacterized protein LOC128112311 isoform X1 [Peromyscus californicus insignis]	67.0	2e-08	XP_052597328
Meriones unguiculatus (Mongolian gerbil) [rodents] Next Previous First
endogenous retrovirus group K member 19 Pol protein isoform X1 [Meriones unguiculatus]	78.2	9e-13	XP_060240691
Psammomys obesus (fat sand rat) [rodents] Next Previous First
LOW QUALITY PROTEIN: uncharacterized protein LOC129677169 [Psammomys obesus]	79.0	2e-12	XP_055463812
Thamnophis sirtalis [snakes] Next Previous First
PREDICTED: endogenous retrovirus group K member 11 Pol protein-like [Thamnophis sirtalis]	78.2	3e-12	XP_013917235
PREDICTED: endogenous retrovirus group K member 11 Pol protein-like [Thamnophis sirtalis]	77.8	5e-12	XP_013920191
Squirrel monkey retrovirus [viruses] Next Previous First
pol protein [Squirrel monkey retrovirus]	77.8	5e-12	NP_041261
Phaenicophaeus curvirostris [birds] Next Previous First
KRAB-A domain-containing protein 2 [Phaenicophaeus curvirostris]	77.0	8e-12	XP_069738427
uncharacterized protein [Phaenicophaeus curvirostris]	67.8	8e-09	XP_069737375
Calidris pugnax (ruff) [birds] Next Previous First
PREDICTED: endogenous retrovirus group K member 8 Pol protein-like [Calidris pugnax]	75.1	9e-12	XP_014816033
Simian retrovirus 4 [viruses] Next Previous First
pol protein, partial [Simian retrovirus 4]	76.3	2e-11	YP_003864102
Dasypus novemcinctus (nine-banded armadillo) [placentals] Next Previous First
uncharacterized protein LOC131276570 [Dasypus novemcinctus]	76.3	2e-11	XP_058145900
Nannospalax galili (Upper Galilee mountains blind mole rat) [rodents] Next Previous First
uncharacterized protein LOC108490752, partial [Nannospalax galili]	75.5	3e-11	XP_017653280
Rhinolophus ferrumequinum (greater horseshoe bat) [bats] Next Previous First
LOW QUALITY PROTEIN: uncharacterized protein LOC117035007 [Rhinolophus ferrumequinum]	74.3	7e-11	XP_032984519
Mason-Pfizer monkey virus [viruses] Next Previous First
RT-IN [Mason-Pfizer monkey virus]	74.3	9e-11	NP_056891
RT-IN [Mason-Pfizer monkey virus]	74.3	9e-11	NP_954565
Lepidothrix coronata (blue-crowned manakin) [birds] Next Previous First
PREDICTED: endogenous retrovirus group K member 25 Pol protein-like [Lepidothrix coronata]	71.2	2e-10	XP_017671855
PREDICTED: endogenous retrovirus group K member 18 Pol protein-like [Lepidothrix coronata]	69.7	2e-09	XP_017679475
PREDICTED: endogenous retrovirus group K member 18 Pol protein-like [Lepidothrix coronata]	68.9	4e-09	XP_017667885
Pseudopodoces humilis (Tibetan ground-tit) [birds] Next Previous First
PREDICTED: endogenous retrovirus group K member 19 Pol protein-like [Pseudopodoces humilis]	72.0	3e-10	XP_014106443
PREDICTED: endogenous retrovirus group K member 8 Pol protein-like [Pseudopodoces humilis]	66.6	2e-08	XP_014117040
Monodon monoceros (narwhal) [whales & dolphins] Next Previous First
uncharacterized protein LOC114897694 [Monodon monoceros]	68.6	5e-10	XP_029082550
Pipra filicauda (Wire-tailed manakin) [birds] Next Previous First
uncharacterized protein LOC113993217 [Pipra filicauda]	71.2	8e-10	XP_039241784
Cricetulus griseus (Chinese hamster) [rodents] Next Previous First
protein NYNRIN-like [Cricetulus griseus]	70.1	1e-09	XP_027257768
protein NYNRIN-like [Cricetulus griseus]	70.1	1e-09	XP_035306926
protein NYNRIN-like [Cricetulus griseus]	69.7	2e-09	XP_027247589
LOW QUALITY PROTEIN: uncharacterized protein LOC113835045 [Cricetulus griseus]	63.2	5e-07	XP_027265461
Camelus ferus (Wild Bactrian camel) [even-toed ungulates & whales] Next Previous First
WD repeat-containing protein 73 isoform X1 [Camelus ferus]	70.1	1e-09	XP_032325343
Condylura cristata (star-nosed mole) [insectivores] Next Previous First
PREDICTED: LOW QUALITY PROTEIN: endogenous retrovirus group K member 8 Pol protein-like [Condylura cristata]	68.2	7e-09	XP_012581449
Mus caroli (Ryukyu mouse) [rodents] Next Previous First
LOW QUALITY PROTEIN: uncharacterized protein LOC110288513, partial [Mus caroli]	67.8	1e-08	XP_021010498
LOW QUALITY PROTEIN: uncharacterized protein LOC110312285 [Mus caroli]	64.7	1e-07	XP_021041459
LOW QUALITY PROTEIN: uncharacterized protein LOC110311355 [Mus caroli]	63.2	5e-07	XP_021040255
Chionomys nivalis (European snow vole) [rodents] Next Previous First
uncharacterized protein LOC130877762 [Chionomys nivalis]	66.6	3e-08	XP_057631307
uncharacterized protein LOC130887628 [Chionomys nivalis]	66.2	3e-08	XP_057646156
Talpa occidentalis (Iberian mole) [insectivores] Next Previous First
uncharacterized protein LOC129144950 [Talpa occidentalis]	66.2	3e-08	XP_054545942
uncharacterized protein LOC129144950 [Talpa occidentalis]	66.2	3e-08	XP_054545943
uncharacterized protein LOC119239969 [Talpa occidentalis]	62.4	4e-07	XP_054549213
Bos mutus (wild yak) [even-toed ungulates & whales] Next Previous First
LOW QUALITY PROTEIN: endogenous retrovirus group K member 8 Gag polyprotein-like [Bos mutus]	66.2	3e-08	XP_070231011
Zonotrichia albicollis (white-throated sparrow) [birds] Next Previous First
uncharacterized protein LOC106629581 [Zonotrichia albicollis]	65.1	6e-08	XP_014125095
Alexandromys fortis (reed vole) [rodents] Next Previous First
uncharacterized protein [Alexandromys fortis]	65.5	6e-08	XP_049984075
Corvus brachyrhynchos (American crow) [birds] Next Previous First
PREDICTED: endogenous retrovirus group K member 18 Pol protein-like [Corvus brachyrhynchos]	65.5	6e-08	XP_017597389
PREDICTED: endogenous retrovirus group K member 25 Pol protein-like [Corvus brachyrhynchos]	63.5	1e-07	XP_017586203
PREDICTED: endogenous retrovirus group K member 25 Pol protein-like [Corvus brachyrhynchos]	62.0	6e-07	XP_017599759
Emys orbicularis (European pond turtle) [turtles] Next Previous First
endogenous retrovirus group K member 18 Pol protein [Emys orbicularis]	64.7	1e-07	XP_065275705
Dama dama (fallow deer) [even-toed ungulates & whales] Next Previous First
uncharacterized protein LOC133071258 isoform X1 [Dama dama]	64.7	1e-07	XP_061019800
uncharacterized protein LOC133071258 isoform X1 [Dama dama]	64.7	1e-07	XP_061019808
uncharacterized protein LOC133071258 isoform X1 [Dama dama]	64.7	1e-07	XP_061019815
uncharacterized protein LOC133071258 isoform X1 [Dama dama]	64.7	1e-07	XP_061019825
endogenous retrovirus group K member 10 Gag polyprotein-like isoform X2 [Dama dama]	64.7	1e-07	XP_061019834
Anomalospiza imberbis [birds] Next Previous First
abl interactor 2 isoform X1 [Anomalospiza imberbis]	64.7	1e-07	XP_068052183
abl interactor 2 isoform X1 [Anomalospiza imberbis]	64.7	1e-07	XP_068052184
abl interactor 2 isoform X1 [Anomalospiza imberbis]	64.7	1e-07	XP_068052185
abl interactor 2 isoform X1 [Anomalospiza imberbis]	64.7	1e-07	XP_068052186
Enzootic nasal tumor virus 2 [viruses] Next Previous First
gag-pro-pol fusion, partial [Enzootic nasal tumor virus 2]	64.7	1e-07	NP_862833
Jaagsiekte sheep retrovirus [viruses] Next Previous First
pol protein [Jaagsiekte sheep retrovirus]	64.3	1e-07	NP_041186
Prinia subflava (tawny-flanked prinia) [birds] Next Previous First
LOW QUALITY PROTEIN: uncharacterized protein LOC134563380 [Prinia subflava]	64.7	1e-07	XP_063277335
Ornithodoros turicata [mites & ticks] Next Previous First
uncharacterized protein K02A2.6-like [Ornithodoros turicata]	63.2	2e-07	XP_064458846
Ovine enzootic nasal tumor virus [viruses] Next Previous First
gap-pro-pol fusion, partial [Ovine enzootic nasal tumor virus]	64.3	2e-07	YP_241114
Calcarisporiella thermophila [mucoromycotan fungi] Next Previous First
uncharacterized protein VTP21DRAFT_6376 [Calcarisporiella thermophila]	63.5	2e-07	XP_069246891
Chinchilla lanigera (long-tailed chinchilla) [rodents] Next Previous First
PREDICTED: endogenous retrovirus group K member 8 Pol protein-like isoform X1 [Chinchilla lanigera]	63.9	2e-07	XP_013374464
Passer domesticus (house sparrow) [birds] Next Previous First
uncharacterized protein LOC135289182 [Passer domesticus]	63.5	3e-07	XP_064258690
Manduca sexta (tobacco hornworm) [moths] Next Previous First
uncharacterized protein K02A2.6 [Manduca sexta]	63.2	3e-07	XP_030039096
Capra hircus (goat) [even-toed ungulates & whales] Next Previous First
PREDICTED: LOW QUALITY PROTEIN: endogenous retrovirus group K member 18 Pol protein-like [Capra hircus]	63.2	4e-07	XP_017905435
Tripterygium wilfordii [eudicots] Next Previous First
uncharacterized protein LOC119979836 [Tripterygium wilfordii]	63.2	4e-07	XP_038678392
uncharacterized protein LOC119996970, partial [Tripterygium wilfordii]	62.8	5e-07	XP_038699676
uncharacterized protein LOC119979828, partial [Tripterygium wilfordii]	62.8	6e-07	XP_038678383
Melospiza melodia melodia [birds] Next Previous First
uncharacterized protein LOC134419129 [Melospiza melodia melodia]	63.2	5e-07	XP_063014162
Neofelis nebulosa (Clouded leopard) [carnivores] Next Previous First
uncharacterized protein LOC131519634 [Neofelis nebulosa]	62.4	6e-07	XP_058598889

Taxonomy

Taxonomy Report
Taxonomy	Number of hits	Number of Organisms	Description
root	130	65
. Orthoretrovirinae	23	19
.. Lentivirus	15	12
... Human immunodeficiency virus 1	4	1	Human immunodeficiency virus 1 hits
... Simian immunodeficiency virus	1	2	Simian immunodeficiency virus hits
.... Simian immunodeficiency virus SIV-mnd 2	1	1	Simian immunodeficiency virus SIV-mnd 2 hits
... Human immunodeficiency virus 2	1	1	Human immunodeficiency virus 2 hits
... Feline immunodeficiency virus	1	1	Feline immunodeficiency virus hits
... Puma lentivirus 14	1	1	Puma lentivirus 14 hits
... Jembrana disease virus	1	1	Jembrana disease virus hits
... Bovine immunodeficiency virus	1	1	Bovine immunodeficiency virus hits
... Equine infectious anemia virus	1	1	Equine infectious anemia virus hits
... Ovine lentivirus	1	1	Ovine lentivirus hits
... Visna-maedi virus	1	1	Visna-maedi virus hits
... Caprine arthritis encephalitis virus	1	1	Caprine arthritis encephalitis virus hits
.. Betaretrovirus	8	7
... unclassified Betaretrovirus	4	4
.... Simian retrovirus 8	1	1	Simian retrovirus 8 hits
.... Simian retrovirus 4	1	1	Simian retrovirus 4 hits
.... Enzootic nasal tumor virus 2	1	1	Enzootic nasal tumor virus 2 hits
.... Ovine enzootic nasal tumor virus	1	1	Ovine enzootic nasal tumor virus hits
... Squirrel monkey retrovirus	1	1	Squirrel monkey retrovirus hits
... Mason-Pfizer monkey virus	2	1	Mason-Pfizer monkey virus hits
... Jaagsiekte sheep retrovirus	1	1	Jaagsiekte sheep retrovirus hits
. cellular organisms	107	46
.. Saccharothrix mutabilis	1	1	Saccharothrix mutabilis hits
.. Eukaryota	106	45
... Opisthokonta	103	44
.... Bilateria	102	43
..... Amniota	100	41
...... Theria	77	28
....... Eutheria	74	26
........ Boreoeutheria	73	25
......... Rodentia	49	12
.......... Dipodomys ordii	5	1	Dipodomys ordii hits
.......... Muroidea	40	9
........... Muridae	19	4
............ Mus	17	2
............. Mus musculus	14	1	Mus musculus hits
............. Mus caroli	3	1	Mus caroli hits
............ Gerbillinae	2	2
............. Meriones unguiculatus	1	1	Meriones unguiculatus hits
............. Psammomys obesus	1	1	Psammomys obesus hits
........... Cricetidae	20	4
............ Peromyscus californicus insignis	13	1	Peromyscus californicus insignis hits
............ Cricetulus griseus	4	1	Cricetulus griseus hits
............ Arvicolinae	3	2
............. Chionomys nivalis	2	1	Chionomys nivalis hits
............. Alexandromys fortis	1	1	Alexandromys fortis hits
........... Nannospalax galili	1	1	Nannospalax galili hits
.......... Hystricomorpha	4	2
........... Cavia porcellus	3	1	Cavia porcellus hits
........... Chinchilla lanigera	1	1	Chinchilla lanigera hits
......... Laurasiatheria	24	13
.......... Chiroptera	6	2
........... Miniopterus natalensis	5	1	Miniopterus natalensis hits
........... Rhinolophus ferrumequinum	1	1	Rhinolophus ferrumequinum hits
.......... Artiodactyla	13	8
........... Pecora	11	6
............ Cervinae	6	2
............. Cervus elaphus	1	1	Cervus elaphus hits
............. Dama dama	5	1	Dama dama hits
............ Bovidae	5	4
............. Bovinae	4	3
.............. Bison bison bison	2	1	Bison bison bison hits
.............. Bos	2	2
............... Bos indicus x Bos taurus	1	1	Bos indicus x Bos taurus hits
............... Bos mutus	1	1	Bos mutus hits
............. Capra hircus	1	1	Capra hircus hits
........... Monodon monoceros	1	1	Monodon monoceros hits
........... Camelus ferus	1	1	Camelus ferus hits
.......... Talpidae	4	2
........... Condylura cristata	1	1	Condylura cristata hits
........... Talpa occidentalis	3	1	Talpa occidentalis hits
.......... Neofelis nebulosa	1	1	Neofelis nebulosa hits
........ Dasypus novemcinctus	1	1	Dasypus novemcinctus hits
....... Metatheria	3	2
........ Antechinus flavipes	1	1	Antechinus flavipes hits
........ Monodelphis domestica	2	1	Monodelphis domestica hits
...... Sauria	23	13
....... Thamnophis sirtalis	2	1	Thamnophis sirtalis hits
....... Archelosauria	21	12
........ Neoaves	20	11
......... Phaenicophaeus curvirostris	2	1	Phaenicophaeus curvirostris hits
......... Calidris pugnax	1	1	Calidris pugnax hits
......... Passeriformes	17	9
.......... Pipridae	4	2
........... Lepidothrix coronata	3	1	Lepidothrix coronata hits
........... Pipra filicauda	1	1	Pipra filicauda hits
.......... Pseudopodoces humilis	2	1	Pseudopodoces humilis hits
.......... Passerellidae	2	2
........... Zonotrichia albicollis	1	1	Zonotrichia albicollis hits
........... Melospiza melodia melodia	1	1	Melospiza melodia melodia hits
.......... Corvus brachyrhynchos	3	1	Corvus brachyrhynchos hits
.......... Passeridae	5	2
........... Anomalospiza imberbis	4	1	Anomalospiza imberbis hits
........... Passer domesticus	1	1	Passer domesticus hits
.......... Prinia subflava	1	1	Prinia subflava hits
........ Emys orbicularis	1	1	Emys orbicularis hits
..... Arthropoda	2	2
...... Ornithodoros turicata	1	1	Ornithodoros turicata hits
...... Manduca sexta	1	1	Manduca sexta hits
.... Calcarisporiella thermophila	1	1	Calcarisporiella thermophila hits
... Tripterygium wilfordii	3	1	Tripterygium wilfordii hits

Filter Results

Sequences producing significant alignments