- 100 sequences selected
Searches from this IP address have consumed a large amount of server CPU time. Future searches may be penalized in fairness to other users.
Please consider running your BLAST searches with ElasticBLAST or BLAST+.
- Job Title
-
ref|WP_343940607.1|
- RID
- TFPEV471013 Search expires on 01-29 02:09 am
- Program
- BLASTP
Help
Program version: BLASTP 2.16.1+
-
Citation
ReferenceStephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.Reference - compositional score matrix adjustmentStephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
-
Citation
- Database
-
pdb
-
See details
Title:PDB protein database
Description:This database consists of sequences from the Protein Data Bank (PDB), which contains information about experimentally-determined structures of proteins, nucleic acids, and complex assemblies.
Molecule Type:Protein
Update date:2025/01/26
Number of sequences:167106
-
See details
- Query ID
- WP_343940607.1 WP_343940607.1
- Description
-
DUF1968 domain-containing protein [Saccharothrix mutabilis]
- Molecule type
- amino acid
- Query Length
- 603
- Other reports
-
Distance tree of results
Multiple alignment
MSA viewer
Help
Reports are generated on using all sequences producing significant alignments. To generate reports on a subset of sequences, use the report links in the Descriptions tab while selecting specific sequences.
Filter Results
-
Sequences producing significant alignments
- Help
Subject sequences can be removed or added from within the Descriptions tab and the selections will carry through to the other tabbed views. Use the formats in Download to save data for selected sequences. Manage Columns adds and subtracts data columns from the Descriptions table. Use the click outs to see the selected results in GenPept , Graphical Sequence Viewer , BLAST Tree View , COBALT multiple sequence alignment .
-
- hover to see the title
- click to show alignments
- Alignment Scores
- < 40
- 40 - 50
- 50 - 80
- 80 - 200
- >= 200
- Help
The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
- 100 sequences selected
- Help
To select sequences, go to the Descriptions tab
Putative conserved domains have been detected, click on the image below for detailed results.
Distribution of the top 112 Blast Hits on 100 subject sequences
Query1100200300400500600 -
- Help
- Alignment view: Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
- CDS feature: Show annotated coding region and translation. more...
- Line length: Number of letters to show on one line in an alignment.
- 100 sequences selected
- Help
To select sequences, go to the Descriptions tab
Loading alignment... for sequences pdb|8GOM|E,pdb|3UTP|E,pdb|5C0B|E,pdb|6P64|E,pdb|3UTT|E Reading indexes 1-5Loading alignment... for sequences pdb|7DZN|D,pdb|7PHR|A,pdb|7DZM|D,pdb|7FJD|n,pdb|6JXR|n Reading indexes 6-10 -
Reports
- 100 sequences selected
- Help
To select sequences, go to the Descriptions tab
-
Lineage Report Organism Blast Name Score Number of Hits Description root 226 .Euarchontoglires placentals 219 ..Homo sapiens primates 490 207 ..Mus musculus rodents 432 12 .synthetic construct other sequences 451 7 -
Organism Report Description Score E value Accession Homo sapiens (human) [primates] Next Previous First 490 2e-172 8GOM_E 490 2e-172 8GON_E 490 2e-172 8GOP_B 489 4e-172 3UTP_E 489 4e-172 3UTP_L 489 4e-172 3UTS_E 489 4e-172 3UTS_J 489 4e-172 5C07_E 489 4e-172 5C07_J 489 4e-172 5C09_E 489 4e-172 5C09_J 489 4e-172 5C0A_E 489 4e-172 5C0A_J 489 4e-172 5HYJ_E 489 4e-172 5HYJ_J 489 5e-172 5C0B_E 489 5e-172 5C0B_J 489 5e-172 5C0C_E 489 5e-172 5C0C_J 488 1e-171 6P64_E 488 1e-171 6P64_J 488 1e-171 6UK2_E 488 1e-171 6UK4_E 487 3e-171 3UTT_E 487 3e-171 3UTT_J 487 3e-171 5C08_E 487 3e-171 5C08_J 487 3e-171 7DZN_D 486 1e-170 7PHR_A 484 3e-170 7DZM_D 459 4e-159 7FJD_n 459 4e-159 7FJF_n 457 1e-158 6JXR_n 456 1e-157 7FJE_n 446 1e-153 8ES7_B 446 1e-153 8ES8_B 451 2e-152 9C3E_B 441 5e-152 8ES9_B 438 3e-151 7PHR_B 437 8e-151 9BBC_B 423 5e-146 3OF6_A 423 5e-146 3OF6_B 423 5e-146 3OF6_C 420 7e-145 1KGC_E 417 6e-144 1MI5_E 417 6e-144 3KPR_E 417 6e-144 3KPR_J 417 6e-144 3KPS_E 414 2e-142 4WW1_B 414 2e-142 4WW2_B 413 3e-142 8DNT_B 413 3e-142 8DNT_I 413 3e-142 8DNT_P 413 3e-142 8DNT_W 412 7e-142 4UDT_B 412 7e-142 4UDU_B 412 7e-142 5FK9_B 412 7e-142 5FKA_B 409 2e-140 4OZF_H 409 2e-140 6U3O_B 409 2e-140 6U3O_H 408 3e-140 4OZH_F 408 3e-140 4OZH_H 407 5e-140 7NDT_EEE 407 5e-140 7NDT_JJJ 407 7e-140 7NME_E 407 7e-140 7NMF_E 407 7e-140 7NMG_E 407 9e-140 7RTR_E 407 9e-140 7N1F_E 407 9e-140 6C09_D 407 1e-139 8QFY_EEE 407 1e-139 8QFY_JJJ 406 2e-139 4OZG_F 406 2e-139 4OZG_H 406 2e-139 5EU6_E 405 5e-139 2ESV_E 405 6e-139 7N1D_B 405 1e-138 6PX6_E 404 1e-138 8V4Z_E 404 1e-138 8V4Z_J 404 1e-138 8V4Z_O 404 1e-138 8V4Z_T 404 1e-138 8V50_E 404 1e-138 8V50_J 404 1e-138 8V50_O 404 1e-138 8V50_T 404 1e-138 8V51_E 403 6e-138 4GRL_D 402 8e-138 3DX9_B 402 8e-138 3DX9_D 402 8e-138 3DXA_E 402 8e-138 3DXA_J 402 8e-138 3DXA_O 402 1e-137 5D2L_F 402 1e-137 5D2L_J 402 1e-137 5D2L_L 402 1e-137 5D2L_P 402 1e-137 8GVI_B 402 1e-137 5WJO_B 402 1e-137 5WJO_D 402 1e-137 5WKI_E 402 2e-137 3PL6_D 399 7e-137 7EA6_B 399 7e-137 7EA6_E 399 8e-137 7N1C_E 399 8e-137 7N1E_E 399 2e-136 8GVB_B 399 2e-136 8GVG_B 397 5e-136 3VXQ_B 397 5e-136 3VXQ_E 397 5e-136 3VXR_E 397 5e-136 3VXS_E 397 6e-136 7PBE_E 397 6e-136 7PBE_J 397 6e-136 6RP9_E 397 6e-136 6RP9_J 397 6e-136 6RP9_L 397 7e-136 7RRG_E 397 8e-136 7NDQ_EEE 397 8e-136 7NDU_EEE 396 1e-135 7T2D_E 396 1e-135 7T2D_J 396 1e-135 7T2D_O 396 1e-135 7T2D_T 397 1e-135 5D2N_E 397 1e-135 5D2N_F 396 2e-135 6RSY_E 396 2e-135 6RSY_J 395 5e-135 3FFC_E 395 5e-135 3FFC_J 393 2e-134 4QRP_E 393 2e-134 4QRP_I 393 2e-134 4QRP_L 390 6e-134 1YMM_D 392 7e-134 7SG0_E 391 1e-133 7RM4_D 391 1e-133 7RM4_I 391 1e-133 7RM4_N 391 1e-133 7RM4_S 390 3e-133 6CPH_E 390 3e-133 6CQL_E 390 3e-133 6CQQ_E 390 3e-133 6CQQ_J 390 3e-133 6CQR_E 390 3e-133 6CQR_J 390 4e-133 6CQN_E 389 7e-133 5WKF_E 389 7e-133 5WKF_J 389 7e-133 5WKH_E 389 7e-133 5WKH_J 387 1e-132 6DFX_G 387 1e-132 6DFX_I 385 8e-132 7T2B_D 385 8e-132 7T2B_I 385 8e-132 7T2B_N 385 8e-132 7T2B_S 385 2e-131 2WBJ_C 385 2e-131 2WBJ_G 385 3e-131 6PY2_E 385 3e-131 8TRL_H 385 3e-131 8TRL_J 384 8e-131 4MJI_E 384 8e-131 4MJI_J 382 4e-130 6R2L_E 381 5e-130 6OVN_A 380 2e-129 4EN3_A 379 2e-128 8TW4_A 379 2e-128 8TW6_A 378 5e-128 9BBC_A 377 1e-127 9C3E_A 374 1e-126 4Z7V_F 374 1e-126 4Z7V_H 374 1e-126 4GG6_F 374 1e-126 4GG6_H 374 1e-126 4GG8_B 374 1e-126 4GG8_F 372 3e-126 6AVG_D 372 3e-126 6AVG_E 370 2e-125 8CX4_F 368 3e-125 4MJI_D 368 3e-125 4MJI_I 368 1e-124 7N2R_F 369 1e-124 8RYP_E 369 1e-124 8RYQ_E 369 1e-124 8RYQ_J 368 1e-124 4PRH_E 368 2e-124 5KSA_D 367 2e-124 7N2S_F 367 2e-124 7N2N_F 367 2e-124 7N2O_F 367 3e-124 4QRR_E 367 4e-124 5KS9_F 367 4e-124 5KS9_H 367 4e-124 5KSB_F 367 4e-124 5KSB_H 367 5e-124 3MV8_E 367 7e-124 1ZGL_P 367 7e-124 1ZGL_R 367 7e-124 1ZGL_T 367 7e-124 1ZGL_V 366 9e-124 4Z7U_F 366 9e-124 4Z7U_H 365 1e-123 4E41_E 365 1e-123 4E41_J 365 1e-123 4E42_B 365 1e-123 4E42_D synthetic construct [other sequences] Next Previous First 451 2e-152 8TW4_B 451 2e-152 8TW6_B 402 1e-137 4MAY_D 389 7e-133 4EI5_D 389 7e-133 4EI5_H 389 7e-133 4EI6_B 389 7e-133 4EI6_D Mus musculus (house mouse) [rodents] Next Previous First 432 9e-150 7Z50_E 432 9e-150 7Z50_F 429 3e-148 8I5D_B 376 8e-128 4ELK_B 376 8e-128 4ELK_D 376 8e-128 4ELM_F 376 8e-128 4ELM_H 372 5e-126 4P2O_D 372 5e-126 6BGA_D 372 7e-126 3QJF_B 372 7e-126 3QJF_D 372 8e-126 3QIB_D -
Taxonomy Report Taxonomy Number of hits Number of Organisms Description root 226 3 . Euarchontoglires 219 2 .. Homo sapiens 207 1 .. Mus musculus 12 1 . synthetic construct 7 1