(cache)NCBI Blast:(2) - ref|NZ

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Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	5000
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Aug 26, 2024 2:45 AM
Number of letters	3,298,430,608
Number of sequences	705
Entrez query	Includes: Humo sapiens (taxid:9606) Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	32
Effective length of query	5867
Effective length of database	3298408048
Effective search space	19351760017616
Effective search space used	19351760017616

Your search is limited to records that include: Humo sapiens (taxid:9606)

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Please consider running your BLAST searches with ElasticBLAST or BLAST+.

Job Title

(2) - ref|NZ_BAAABU010000046.1| ...

RID

TFGPYFWR013 Search expires on 01-29 00:31 am

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Results for

Program

BLASTN

Citation

Database

refseq_genomes (GPIPE/9606/RS_2024_08/GCF_000001405.40_top_level)

See details

Title:Homo sapiens GRCh38.p14 [GCF_000001405.40] chromosomes plus unplaced and unlocalized scaffolds
Description:Set of RefSeq genomic top-level sequences (chromosomes, unplaced and unlocalized scaffolds) in an assembly
Molecule Type:Genomic
Update date:2025/01/26
Number of sequences:705

refseq_genomes - organisms
Organim inclusion
Organims name

Included: Humo sapiens (taxid:9606)

Excluded:

Query ID

refseq_genomes - organisms
Organim inclusion	Organims name
Included:	Humo sapiens (taxid:9606)
Excluded:

NZ_BAAABU010000046.1

Description

Saccharothrix mutabilis subsp. mutabilis strain JCM 3380 sequence46, whole genome shotgun sequence ...

Molecule type

dna

Query Length

5899

Other reports

Distance tree of results MSA viewer

Filter Results

Descriptions

select all
5 sequences selected

, Reading indexes 1-5, displaying indexes 1-5

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq NC_000006.12	Homo sapiens chromosome 6, GRCh38.p14 Primary Assembly	Homo sapiens	human	9606	2152	2152	20%	0.0	99.41%	170805979	NC_000006.12
2Select seq NT_187562.1	Homo sapiens chromosome 7 genomic scaffold, GRCh38.p14 alternate locus group ALT_REF_LOCI_1 HSCHR7_2_CTG6	Homo sapiens	human	9606	339	655	7%	2e-89	82.40%	1111570	NT_187562.1
3Select seq NC_000007.14	Homo sapiens chromosome 7, GRCh38.p14 Primary Assembly	Homo sapiens	human	9606	333	716	7%	8e-88	82.14%	159345973	NC_000007.14
4Select seq NC_000005.10	Homo sapiens chromosome 5, GRCh38.p14 Primary Assembly	Homo sapiens	human	9606	65.8	65.8	1%	3e-07	100.00%	181538259	NC_000005.10
5Select seq NC_000009.12	Homo sapiens chromosome 9, GRCh38.p14 Primary Assembly	Homo sapiens	human	9606	65.8	65.8	1%	3e-07	100.00%	138394717	NC_000009.12

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  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
- 5 sequences selected
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Distribution of the top 8 Blast Hits on 5 subject sequences

Query

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Alignments

5 sequences selected
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Homo sapiens chromosome 6, GRCh38.p14 Primary Assembly

Sequence ID: NC_000006.12Length: 170805979Number of Matches: 1

Related Information

NewGenome Data Viewer-aligned genomic context

Range 1: 73520048 to 73521235GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
2152 bits(1165)	0.0()	1181/1188(99%)	4/1188(0%)	Plus/Minus

Features:

22 bp at 5' side: elongation factor 1-alpha 1 73826 bp at 3' side: sialin isoform 3

Query  2042      CGTGAGGCTCCGGTGCCCGTCAGTGGGCAGAGCGCACATCGCCCACAGTCCCCGAGAAGT  2101
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73521235  CGTGAGGCTCCGGTGCCCGTCAGTGGGCAGAGCGCACATCGCCCACAGTCCCCGAGAAGT  73521176

Query  2102      TGGGGGGAGGGGTCGGCAATTGAACCGGTGCCTAGAGAAGGTGGCGCGGGGTAAACTGGG  2161
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73521175  TGGGGGGAGGGGTCGGCAATTGAACCGGTGCCTAGAGAAGGTGGCGCGGGGTAAACTGGG  73521116

Query  2162      AAAGTGATGTCGTGTACTGGCTCCGCCTTTTTCCCGAGGGTGGGGGAGAACCGTATATAA  2221
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73521115  AAAGTGATGTCGTGTACTGGCTCCGCCTTTTTCCCGAGGGTGGGGGAGAACCGTATATAA  73521056

Query  2222      GTGCAGTAGTCGCCGTGAACGTTCTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTAA  2281
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73521055  GTGCAGTAGTCGCCGTGAACGTTCTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTAA  73520996

Query  2282      GTGCCGTGTGTGGTTCCCGCGGGCCTGGCCTCTTTACGGGTTATGGCCCTTGCGTGCCTT  2341
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73520995  GTGCCGTGTGTGGTTCCCGCGGGCCTGGCCTCTTTACGGGTTATGGCCCTTGCGTGCCTT  73520936

Query  2342      GAATTACTTCCAC----CTGGCTGCAGTACGTGATTCTTGATCCCGAGCTTCGGGTTGGA  2397
                 |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct  73520935  GAATTACTTCCACGCCCCTGGCTGCAGTACGTGATTCTTGATCCCGAGCTTCGGGTTGGA  73520876

Query  2398      AGTGGGTGGGAGAGTTCGAGGCCTTGCGCTTAAGGAGCCCCTTCGCCTCGTGCTTGAGTT  2457
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73520875  AGTGGGTGGGAGAGTTCGAGGCCTTGCGCTTAAGGAGCCCCTTCGCCTCGTGCTTGAGTT  73520816

Query  2458      GAGGCCTGGCCTGGGCGCTGGGGCCGCCGCGTGCGAATCTGGTGGCACCTTCGCGCCTGT  2517
                 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73520815  GAGGCCTGGCTTGGGCGCTGGGGCCGCCGCGTGCGAATCTGGTGGCACCTTCGCGCCTGT  73520756

Query  2518      CTCGCTGCTTTCGATAAGTCTCTAGCCATTTAAAATTTTTGATGACCTGCTGCGACGCtt  2577
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73520755  CTCGCTGCTTTCGATAAGTCTCTAGCCATTTAAAATTTTTGATGACCTGCTGCGACGCTT  73520696

Query  2578      tttttCTGGCAAGATAGTCTTGTAAATGCGGGCCAAGATCTGCACACTGGTATTTCGGTT  2637
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73520695  TTTTTCTGGCAAGATAGTCTTGTAAATGCGGGCCAAGATCTGCACACTGGTATTTCGGTT  73520636

Query  2638      TTTGGGGCCGCGGGCGGCGACGGGGCCCGTGCGTCCCAGCGCACATGTTCGGCGAGGCGG  2697
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73520635  TTTGGGGCCGCGGGCGGCGACGGGGCCCGTGCGTCCCAGCGCACATGTTCGGCGAGGCGG  73520576

Query  2698      GGCCTGCGAGCGCGGCCACCGAGAATCGGACGGGGGTAGTCTCAAGCTGGCCGGCCTGCT  2757
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73520575  GGCCTGCGAGCGCGGCCACCGAGAATCGGACGGGGGTAGTCTCAAGCTGGCCGGCCTGCT  73520516

Query  2758      CTGGTGCCTGGCCTCGCGCCGCCGTGTATCGCCCCGCCCTGGGCGGCAAGGCTGGCCCGG  2817
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73520515  CTGGTGCCTGGCCTCGCGCCGCCGTGTATCGCCCCGCCCTGGGCGGCAAGGCTGGCCCGG  73520456

Query  2818      TCGGCACCAGTTGCGTGAGCGGAAAGATGGCCGCTTCCCGGCCCTGCTGCAGGGAGCTCA  2877
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73520455  TCGGCACCAGTTGCGTGAGCGGAAAGATGGCCGCTTCCCGGCCCTGCTGCAGGGAGCTCA  73520396

Query  2878      AAATGGAGGACGCGGCGCTCGGGAGAGCGGGCGGGTGAGTCACCCACACAAAGGAAAAGG  2937
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73520395  AAATGGAGGACGCGGCGCTCGGGAGAGCGGGCGGGTGAGTCACCCACACAAAGGAAAAGG  73520336

Query  2938      GCCTTTCCGTCCTCAGCCGTCGCTTCATGTGACTCCACTGAGTACCGGGCGCCGTCCAGG  2997
                 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  73520335  GCCTTTCCGTCCTCAGCCGTCGCTTCATGTGACTCCACGGAGTACCGGGCGCCGTCCAGG  73520276

Query  2998      CACCTCGATTAGTTCTCGTGCTTTTGGAGTACGTCGTCTTTAGGTTGGGGGGAGGGGTTT  3057
                 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  73520275  CACCTCGATTAGTTCTCGAGCTTTTGGAGTACGTCGTCTTTAGGTTGGGGGGAGGGGTTT  73520216

Query  3058      TATGCGATGGAGTTTCCCCACACTGAGTGGGTGGAGACTGAAGTTAGGCCAGCTTGGCAC  3117
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73520215  TATGCGATGGAGTTTCCCCACACTGAGTGGGTGGAGACTGAAGTTAGGCCAGCTTGGCAC  73520156

Query  3118      TTGATGTAATTCTCCTTGGAATTTGCCCTTTTTGAGTTTGGATCTTGGTTCATTCTCAAG  3177
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73520155  TTGATGTAATTCTCCTTGGAATTTGCCCTTTTTGAGTTTGGATCTTGGTTCATTCTCAAG  73520096

Query  3178      CCTCAGACAGTGGTTCAAAGtttttttCTTCCATTTCAGGTGTCGTGA  3225
                 ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73520095  CCTCAGACAGTGGTTCAAAGTTTTTTTCTTCCATTTCAGGTGTCGTGA  73520048

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Homo sapiens chromosome 7 genomic scaffold, GRCh38.p14 alternate locus group ALT_REF_LOCI_1 HSCHR7_2_CTG6

Sequence ID: NT_187562.1Length: 1111570Number of Matches: 2

Related Information

NewGenome Data Viewer-aligned genomic context

Range 1: 824011 to 824400GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
339 bits(183)	2e-89()	323/392(82%)	4/392(1%)	Plus/Plus

Query  4527    CAGAGGACCTGAAGAACGTGTTCCCCCCTGAGGTGGCCGTGTTTGAGCCTTCCGAGTGC-  4585
               ||||||||||||| ||||||||||| || ||||| || ||||||||||| || ||  || 
Sbjct  824011  CAGAGGACCTGAAAAACGTGTTCCCACCCGAGGTCGCTGTGTTTGAGCCATCAGA-AGCA  824069

Query  4586    GAGATCTCTCACACCCAGAAGGCCACCCTGGTGTGCCTGGCAACCGGCTTCTATCCAGAT  4645
               |||||||| |||||||| |||||||| |||||||||||||| || |||||||| || || 
Sbjct  824070  GAGATCTCCCACACCCAAAAGGCCACACTGGTGTGCCTGGCCACAGGCTTCTACCCCGAC  824129

Query  4646    CACGTGGAGCTGAGCTGGTGGGTGAATGGCAAGGAGGTGCACTCCGGCGT-GTCTACAGA  4704
               ||||||||||||||||||||||||||||| ||||||||||||   || ||   | |||||
Sbjct  824130  CACGTGGAGCTGAGCTGGTGGGTGAATGGGAAGGAGGTGCACAGTGGGGTCAGC-ACAGA  824188

Query  4705    CCCACAGCCCCTGAAGGAGCAGCCCGCCCTGAACGATTCCCGCTACTGCCTGTCTAGCAG  4764
               ||| |||||||| ||||||||||||||||| || || ||| | |||||||||   ||| |
Sbjct  824189  CCCGCAGCCCCTCAAGGAGCAGCCCGCCCTCAATGACTCCAGATACTGCCTGAGCAGCCG  824248

Query  4765    GCTGCGCGTGTCTGCCACCTTTTGGCAGAATCCTCGGAACCACTTCAGATGTCAGGTGCA  4824
                ||| | || || |||||||| |||||||| || || ||||||||| | ||||| || ||
Sbjct  824249  CCTGAGGGTCTCGGCCACCTTCTGGCAGAACCCCCGCAACCACTTCCGCTGTCAAGTCCA  824308

Query  4825    GTTTTATGGCCTGAGCGAGAACGATGAGTGGACCCAGGACAGGGCCAAGCCTGTGACACA  4884
               ||| || || ||    ||||| || |||||||||||||| |||||||| ||||| || ||
Sbjct  824309  GTTCTACGGGCTCTCGGAGAATGACGAGTGGACCCAGGATAGGGCCAAACCTGTCACCCA  824368

Query  4885    GATCGTGTCCGCCGAGGCCTGGGGAAGGGCAG  4916
               ||||||   ||||||||||||||| || ||||
Sbjct  824369  GATCGTCAGCGCCGAGGCCTGGGGTAGAGCAG  824400

Range 2: 814664 to 815053GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
316 bits(171)	8e-83()	320/393(81%)	6/393(1%)	Plus/Plus

Query  4527    CAGAGGACCTGAAGAACGTGTTCCCCCCTGAGGTGGCCGTGTTTGAGCCTTCCGAGTGC-  4585
               ||||||||||||| || |||||||| || ||||| || ||||||||||| || ||  || 
Sbjct  814664  CAGAGGACCTGAACAAGGTGTTCCCACCCGAGGTCGCTGTGTTTGAGCCATCAGA-AGCA  814722

Query  4586    GAGATCTCTCACACCCAGAAGGCCACCCTGGTGTGCCTGGCAACCGGCTTCTATCCAGAT  4645
               |||||||| |||||||| |||||||| |||||||||||||| || |||||||  || || 
Sbjct  814723  GAGATCTCCCACACCCAAAAGGCCACACTGGTGTGCCTGGCCACAGGCTTCTTCCCCGAC  814782

Query  4646    CACGTGGAGCTGAGCTGGTGGGTGAATGGCAAGGAGGTGCACTCCGGCGTGTCTACA--G  4703
               ||||||||||||||||||||||||||||| ||||||||||||   || | |||  ||  |
Sbjct  814783  CACGTGGAGCTGAGCTGGTGGGTGAATGGGAAGGAGGTGCACAGTGG-G-GTCAGCACGG  814840

Query  4704    ACCCACAGCCCCTGAAGGAGCAGCCCGCCCTGAACGATTCCCGCTACTGCCTGTCTAGCA  4763
               |||| |||||||| ||||||||||||||||| || || ||| | |||||||||   ||| 
Sbjct  814841  ACCCGCAGCCCCTCAAGGAGCAGCCCGCCCTCAATGACTCCAGATACTGCCTGAGCAGCC  814900

Query  4764    GGCTGCGCGTGTCTGCCACCTTTTGGCAGAATCCTCGGAACCACTTCAGATGTCAGGTGC  4823
               | ||| | || || |||||||| |||||||| || || ||||||||| | ||||| || |
Sbjct  814901  GCCTGAGGGTCTCGGCCACCTTCTGGCAGAACCCCCGCAACCACTTCCGCTGTCAAGTCC  814960

Query  4824    AGTTTTATGGCCTGAGCGAGAACGATGAGTGGACCCAGGACAGGGCCAAGCCTGTGACAC  4883
               |||| || || ||    ||||| || |||||||||||||| |||||||| || || || |
Sbjct  814961  AGTTCTACGGGCTCTCGGAGAATGACGAGTGGACCCAGGATAGGGCCAAACCCGTCACCC  815020

Query  4884    AGATCGTGTCCGCCGAGGCCTGGGGAAGGGCAG  4916
               |||||||   ||||||||||||||| || ||||
Sbjct  815021  AGATCGTCAGCGCCGAGGCCTGGGGTAGAGCAG  815053

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Homo sapiens chromosome 7, GRCh38.p14 Primary Assembly

Sequence ID: NC_000007.14Length: 159345973Number of Matches: 3

Related Information

NewGenome Data Viewer-aligned genomic context

Range 1: 142801038 to 142801427GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
333 bits(180)	8e-88()	322/392(82%)	4/392(1%)	Plus/Plus

Features:

trbc2

Query  4527       CAGAGGACCTGAAGAACGTGTTCCCCCCTGAGGTGGCCGTGTTTGAGCCTTCCGAGTGC-  4585
                  ||||||||||||| ||||||||||| ||  |||| || ||||||||||| || ||  || 
Sbjct  142801038  CAGAGGACCTGAAAAACGTGTTCCCACCCAAGGTCGCTGTGTTTGAGCCATCAGA-AGCA  142801096

Query  4586       GAGATCTCTCACACCCAGAAGGCCACCCTGGTGTGCCTGGCAACCGGCTTCTATCCAGAT  4645
                  |||||||| |||||||| |||||||| |||||||||||||| || |||||||| || || 
Sbjct  142801097  GAGATCTCCCACACCCAAAAGGCCACACTGGTGTGCCTGGCCACAGGCTTCTACCCCGAC  142801156

Query  4646       CACGTGGAGCTGAGCTGGTGGGTGAATGGCAAGGAGGTGCACTCCGGCGT-GTCTACAGA  4704
                  ||||||||||||||||||||||||||||| ||||||||||||   || ||   | |||||
Sbjct  142801157  CACGTGGAGCTGAGCTGGTGGGTGAATGGGAAGGAGGTGCACAGTGGGGTCAGC-ACAGA  142801215

Query  4705       CCCACAGCCCCTGAAGGAGCAGCCCGCCCTGAACGATTCCCGCTACTGCCTGTCTAGCAG  4764
                  ||| |||||||| ||||||||||||||||| || || ||| | |||||||||   ||| |
Sbjct  142801216  CCCGCAGCCCCTCAAGGAGCAGCCCGCCCTCAATGACTCCAGATACTGCCTGAGCAGCCG  142801275

Query  4765       GCTGCGCGTGTCTGCCACCTTTTGGCAGAATCCTCGGAACCACTTCAGATGTCAGGTGCA  4824
                   ||| | || || |||||||| |||||||| || || ||||||||| | ||||| || ||
Sbjct  142801276  CCTGAGGGTCTCGGCCACCTTCTGGCAGAACCCCCGCAACCACTTCCGCTGTCAAGTCCA  142801335

Query  4825       GTTTTATGGCCTGAGCGAGAACGATGAGTGGACCCAGGACAGGGCCAAGCCTGTGACACA  4884
                  ||| || || ||    ||||| || |||||||||||||| |||||||| ||||| || ||
Sbjct  142801336  GTTCTACGGGCTCTCGGAGAATGACGAGTGGACCCAGGATAGGGCCAAACCTGTCACCCA  142801395

Query  4885       GATCGTGTCCGCCGAGGCCTGGGGAAGGGCAG  4916
                  ||||||   ||||||||||||||| || ||||
Sbjct  142801396  GATCGTCAGCGCCGAGGCCTGGGGTAGAGCAG  142801427

Range 2: 142791691 to 142792080GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
316 bits(171)	8e-83()	320/393(81%)	6/393(1%)	Plus/Plus

Features:

trbc1

Query  4527       CAGAGGACCTGAAGAACGTGTTCCCCCCTGAGGTGGCCGTGTTTGAGCCTTCCGAGTGC-  4585
                  ||||||||||||| || |||||||| || ||||| || ||||||||||| || ||  || 
Sbjct  142791691  CAGAGGACCTGAACAAGGTGTTCCCACCCGAGGTCGCTGTGTTTGAGCCATCAGA-AGCA  142791749

Query  4586       GAGATCTCTCACACCCAGAAGGCCACCCTGGTGTGCCTGGCAACCGGCTTCTATCCAGAT  4645
                  |||||||| |||||||| |||||||| |||||||||||||| || |||||||  || || 
Sbjct  142791750  GAGATCTCCCACACCCAAAAGGCCACACTGGTGTGCCTGGCCACAGGCTTCTTCCCTGAC  142791809

Query  4646       CACGTGGAGCTGAGCTGGTGGGTGAATGGCAAGGAGGTGCACTCCGGCGTGTCTACA--G  4703
                  ||||||||||||||||||||||||||||| ||||||||||||   || | |||  ||  |
Sbjct  142791810  CACGTGGAGCTGAGCTGGTGGGTGAATGGGAAGGAGGTGCACAGTGG-G-GTCAGCACGG  142791867

Query  4704       ACCCACAGCCCCTGAAGGAGCAGCCCGCCCTGAACGATTCCCGCTACTGCCTGTCTAGCA  4763
                  |||| |||||||| ||||||||||||||||| || || ||| | |||||||||   ||| 
Sbjct  142791868  ACCCGCAGCCCCTCAAGGAGCAGCCCGCCCTCAATGACTCCAGATACTGCCTGAGCAGCC  142791927

Query  4764       GGCTGCGCGTGTCTGCCACCTTTTGGCAGAATCCTCGGAACCACTTCAGATGTCAGGTGC  4823
                  | ||| | || || |||||||| |||||||| || || ||||||||| | ||||| || |
Sbjct  142791928  GCCTGAGGGTCTCGGCCACCTTCTGGCAGAACCCCCGCAACCACTTCCGCTGTCAAGTCC  142791987

Query  4824       AGTTTTATGGCCTGAGCGAGAACGATGAGTGGACCCAGGACAGGGCCAAGCCTGTGACAC  4883
                  |||| || || ||    ||||| || |||||||||||||| |||||||| || || || |
Sbjct  142791988  AGTTCTACGGGCTCTCGGAGAATGACGAGTGGACCCAGGATAGGGCCAAACCCGTCACCC  142792047

Query  4884       AGATCGTGTCCGCCGAGGCCTGGGGAAGGGCAG  4916
                  |||||||   ||||||||||||||| || ||||
Sbjct  142792048  AGATCGTCAGCGCCGAGGCCTGGGGTAGAGCAG  142792080

Range 3: 22512028 to 22512062GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
65.8 bits(35)	3e-07()	35/35(100%)	0/35(0%)	Plus/Minus

Features:

17173 bp at 5' side: steap family member 1b isoform x2 215201 bp at 3' side: interleukin-6 isoform 1 precursor

Query  2245      CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGT  2279
                 |||||||||||||||||||||||||||||||||||
Sbjct  22512062  CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGT  22512028

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Homo sapiens chromosome 5, GRCh38.p14 Primary Assembly

Sequence ID: NC_000005.10Length: 181538259Number of Matches: 1

Related Information

NewGenome Data Viewer-aligned genomic context

Range 1: 14653355 to 14653389GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
65.8 bits(35)	3e-07()	35/35(100%)	0/35(0%)	Plus/Minus

Features:

43041 bp at 5' side: inactive ubiquitin thioesterase otulinl isoform x2 11437 bp at 3' side: ubiquitin thioesterase otulin isoform x1

Query  2245      CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGT  2279
                 |||||||||||||||||||||||||||||||||||
Sbjct  14653389  CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGT  14653355

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Homo sapiens chromosome 9, GRCh38.p14 Primary Assembly

Sequence ID: NC_000009.12Length: 138394717Number of Matches: 1

Related Information

NewGenome Data Viewer-aligned genomic context

Range 1: 133019423 to 133019457GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
65.8 bits(35)	3e-07()	35/35(100%)	0/35(0%)	Plus/Plus

Features:

28373 bp at 5' side: zinc finger protein gfi-1b isoform 1 11442 bp at 3' side: general transcription factor 3c polypeptide 5 isoform x3

Query  2245       CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGT  2279
                  |||||||||||||||||||||||||||||||||||
Sbjct  133019423  CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGT  133019457

Taxonomy

5 sequences selected
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Lineage

Lineage Report
Organism	Blast Name	Score	Number of Hits	Description
Homo sapiens	primates	2152	5	Homo sapiens hits

Organism

Organism Report
Description	Score	E value	Accession
Homo sapiens (human) [primates] Next Previous First
Homo sapiens chromosome 6, GRCh38.p14 Primary Assembly	2152	0.0	NC_000006
Homo sapiens chromosome 7 genomic scaffold, GRCh38.p14 alternate locus group ALT_REF_LOCI_1 HSCHR7_2_CTG6	339	2e-89	NT_187562
Homo sapiens chromosome 7, GRCh38.p14 Primary Assembly	333	8e-88	NC_000007
Homo sapiens chromosome 5, GRCh38.p14 Primary Assembly	65.8	3e-07	NC_000005
Homo sapiens chromosome 9, GRCh38.p14 Primary Assembly	65.8	3e-07	NC_000009

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Sequences producing significant alignments