LOCUS       RDV43040                 378 aa            linear   BCT 08-AUG-2018
DEFINITION  hypothetical protein DOE76_19815, partial [Leifsonia sp. ku-ls].
ACCESSION   RDV43040
VERSION     RDV43040.1
DBLINK      BioProject: PRJNA475843
            BioSample: SAMN09404821
DBSOURCE    accession QKXI01000029.1
KEYWORDS    .
SOURCE      Leifsonia sp. ku-ls
  ORGANISM  Leifsonia sp. ku-ls
            Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales;
            Microbacteriaceae; Leifsonia.
REFERENCE   1  (residues 1 to 378)
  AUTHORS   Ulaganathan,K. and Latha,B.
  TITLE     Endophytic Leifsonia sp. of elite indica rice cultivar RPBio226
            genome sequencing and identification of host interactive genes
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 378)
  AUTHORS   Ulaganathan,K. and Latha,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUN-2018) Plant Pathology, Centre For Plant Molecular
            Biology, Osmania University, Hyderabad, Telangana 500007, India
COMMENT     Bacteria and source DNA available from CPMB, OU.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-DEC-2017
            Assembly Method        :: A5Pipeline v. 12-12-2017; CLC genomics
                                      workbench v. 13-12-2017
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 06/14/2018 14:55:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,982
            CDS (total)                       :: 3,930
            Genes (coding)                    :: 3,850
            CDS (coding)                      :: 3,850
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 17 of 80
            Pseudo Genes (incomplete)         :: 61 of 80
            Pseudo Genes (internal stop)      :: 8 of 80
            Pseudo Genes (multiple problems)  :: 6 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Leifsonia sp. ku-ls"
                     /strain="ku-ls"
                     /isolation_source="leaf"
                     /host="Oryza sativa"
                     /db_xref="taxon:2220072"
                     /geo_loc_name="India"
     Protein         <1..378
                     /product="hypothetical protein"
     Region          <4..333
                     /region_name="Hemagglutinin"
                     /note="Haemagglutinin; pfam00509"
                     /db_xref="CDD:395409"
     CDS             1..378
                     /locus_tag="DOE76_19815"
                     /coded_by="complement(QKXI01000029.1:39..>1176)"
                     /inference="COORDINATES: protein motif:HMM:PF00509.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
ORIGIN      
        1 spalivwgih hsvstaeqtk lygsgnklvt vgssnyqqsf vpspgarpqv nglsgridfh
       61 wlmlnpndtv tfsfngafia pdrasflrgk smgiqsgvqv dancegdcyh sggtiisnlp
      121 fqnidsravg kcpryvkqrs lllatgmknv peipkgrglf gaiagfieng weglidgwyg
      181 frhqnaqgeg taadykstqs aidqitgkln rliektnqqf elidnefnev ekqignvinw
      241 trdsitevws ynaellvame nqhtidlads emdklyervk rqlrenaeed gtgcfeifhk
      301 cdddcmasir nntydhskyr eeamqnriqi dpvklssgyk dvilwfsfga scfillaivm
      361 glvficvkng nmrctici
//