LOCUS       QKXI01000029            1176 bp    DNA     linear   BCT 08-AUG-2018
DEFINITION  Leifsonia sp. ku-ls scaffold_29, whole genome shotgun sequence.
ACCESSION   QKXI01000029 QKXI01000000
VERSION     QKXI01000029.1
DBLINK      BioProject: PRJNA475843
            BioSample: SAMN09404821
KEYWORDS    WGS.
SOURCE      Leifsonia sp. ku-ls
  ORGANISM  Leifsonia sp. ku-ls
            Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales;
            Microbacteriaceae; Leifsonia.
REFERENCE   1  (bases 1 to 1176)
  AUTHORS   Ulaganathan,K. and Latha,B.
  TITLE     Endophytic Leifsonia sp. of elite indica rice cultivar RPBio226
            genome sequencing and identification of host interactive genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1176)
  AUTHORS   Ulaganathan,K. and Latha,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUN-2018) Plant Pathology, Centre For Plant Molecular
            Biology, Osmania University, Hyderabad, Telangana 500007, India
COMMENT     Bacteria and source DNA available from CPMB, OU.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-DEC-2017
            Assembly Method        :: A5Pipeline v. 12-12-2017; CLC genomics
                                      workbench v. 13-12-2017
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 06/14/2018 14:55:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,982
            CDS (total)                       :: 3,930
            Genes (coding)                    :: 3,850
            CDS (coding)                      :: 3,850
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 17 of 80
            Pseudo Genes (incomplete)         :: 61 of 80
            Pseudo Genes (internal stop)      :: 8 of 80
            Pseudo Genes (multiple problems)  :: 6 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1176
                     /organism="Leifsonia sp. ku-ls"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold_29"
                     /strain="ku-ls"
                     /isolation_source="leaf"
                     /host="Oryza sativa"
                     /db_xref="taxon:2220072"
                     /geo_loc_name="India"
     gene            complement(39..>1176)
                     /locus_tag="DOE76_19815"
     CDS             complement(39..>1176)
                     /locus_tag="DOE76_19815"
                     /inference="COORDINATES: protein motif:HMM:PF00509.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="RDV43040.1"
                     /translation="SPALIVWGIHHSVSTAEQTKLYGSGNKLVTVGSSNYQQSFVPSP
                     GARPQVNGLSGRIDFHWLMLNPNDTVTFSFNGAFIAPDRASFLRGKSMGIQSGVQVDA
                     NCEGDCYHSGGTIISNLPFQNIDSRAVGKCPRYVKQRSLLLATGMKNVPEIPKGRGLF
                     GAIAGFIENGWEGLIDGWYGFRHQNAQGEGTAADYKSTQSAIDQITGKLNRLIEKTNQ
                     QFELIDNEFNEVEKQIGNVINWTRDSITEVWSYNAELLVAMENQHTIDLADSEMDKLY
                     ERVKRQLRENAEEDGTGCFEIFHKCDDDCMASIRNNTYDHSKYREEAMQNRIQIDPVK
                     LSSGYKDVILWFSFGASCFILLAIVMGLVFICVKNGNMRCTICI"
ORIGIN      
        1 acgcgtgatc agtagaaaca agggtgtttt ttccaaactt atatacaaat agtgcaccgc
       61 atgtttccat tctttacaca tatgaagaca aggcccatta caatggctag aagtatgaaa
      121 catgatgccc cgaagctaaa ccaaagtatc acatctttgt agccgctgct tagtttgact
      181 gggtcaatct gtattctatt ttgcattgcc tcttccctgt atttgctgtg atcataggtg
      241 ttatttctaa tactggccat acagtcatca tcacacttgt gaaatatttc aaagcaacca
      301 gtgccatctt cttcagcatt ctctctcagc tgtcttttca ctcgttcgta cagtttgtcc
      361 atttctgaat cagccagatc aattgtatgc tggttctcca ttgctaccaa gagttcagca
      421 ttgtatgacc acacttctgt tatagaatct ctggtccaat ttatcacatt accgatttgc
      481 ttctctacct cattgaattc attgtctatc aactcaaatt gttggttggt tttttctata
      541 agccggttta attttcctgt tatttgatca attgccgatt gagtgctttt gtaatctgca
      601 gcagttccct ctccctgtgc attctggtgt ctgaaaccat accaaccatc aattaggcct
      661 tcccatccat tttcaatgaa acccgctata gcaccaaata ggcctcttcc ctttggaatc
      721 tcaggaacat tcttcatccc tgttgctagc agcagactcc tttgcttaac atatctcgga
      781 cattttccaa ctgccctgct atctatgttc tgaaatggca agttacttat tattgtccct
      841 ccactatgat agcagtcccc ttcacaattg gcatcaacct gtactccact ctggattccc
      901 atagattttc ctctcaggaa gcttgcacgg tctggagcta tgaaagcccc attgaaactg
      961 aaagtgactg tatcattggg atttagcatt agccaatgaa agtcaattct tccagataga
     1021 ccattaactt gtggtctcgc tcctggactc ggtacaaaag attgttgata attagaactc
     1081 ccaactgtca ccagtttgtt tccactccca tatagcttgg tttgctctgc agttgatacg
     1141 gaatgatgga tcccccatac tattagagct gggctt
//