(cache)NCBI Blast:gb|JAACYR010000216.1|

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Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	100
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Jan 22, 2025 6:25 PM
Number of letters	2,657,038,635,652
Number of sequences	111,872,320
Entrez query	Includes: Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	37
Effective length of query	339
Effective length of database	2652899359812
Effective search space	899332882976268
Effective search space used	899332882976268

Job Title

gb|JAACYR010000216.1| ...

RID

T77C4P2N013 Search expires on 01-25 21:02 pm

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Program

BLASTN

Citation

Database

See details

Title:Nucleotide collection (nt)
Description:The nucleotide collection consists of GenBank+EMBL+DDBJ+PDB+RefSeq sequences, but excludes EST, STS, GSS, WGS, TSA, patent sequences as well as phase 0, 1, and 2 HTGS sequences and sequences longer than 100Mb. The database is non-redundant. Identical sequences have been merged into one entry, while preserving the accession, GI, title and taxonomy information for each entry.
Molecule Type:mixed DNA
Update date:2025/01/22
Number of sequences:111824760

Query ID

JAACYR010000216.1

Description

Mycolicibacter kumamotonensis strain CST 7247 NODE_216_length_376_cov_1.348910, whole genome shotgun sequence ...

Molecule type

dna

Query Length

376

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100 sequences selected

, Reading indexes 1-5, displaying indexes 1-5, Reading indexes 6-10, displaying indexes 6-10

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq KU976738.1	Influenza A virus (A/swine/Mexico/AVX50/2013(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds	Influenza A virus (A/swine/Mexico/AVX50/2013(H1N2))	NA	1820576	601	601	100%	9e-167	95.48%	1775	KU976738.1
2Select seq KP457133.1	Influenza A virus (A/Peru/WRAIR1311P/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Peru/WRAIR1311P/2007(H1N1))	NA	871614	601	601	100%	9e-167	95.48%	1695	KP457133.1
3Select seq KP456704.1	Influenza A virus (A/Stockholm/7/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Stockholm/7/2009(H1N1))	NA	1599672	601	601	100%	9e-167	95.48%	1695	KP456704.1
4Select seq CY070104.1	Influenza A virus (A/Peru/WRAIR1311P/2007(H1N1)) segment 4 sequence	Influenza A virus (A/Peru/WRAIR1311P/2007(H1N1))	NA	871614	601	601	100%	9e-167	95.48%	1728	CY070104.1
5Select seq GU183807.1	Influenza A virus (A/Thailand/CU-B685/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds	Influenza A virus (A/Thailand/CU-B685/2009(H1N1))	NA	691281	601	601	100%	9e-167	95.48%	1784	GU183807.1
6Select seq GU183799.1	Influenza A virus (A/Thailand/CU-B589/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds	Influenza A virus (A/Thailand/CU-B589/2009(H1N1))	NA	691280	601	601	100%	9e-167	95.48%	1784	GU183799.1
7Select seq GQ466371.1	Influenza A virus (A/North Carolina/07/2008(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds	Influenza A virus (A/North Carolina/07/2008(H1N1))	NA	665556	601	601	100%	9e-167	95.48%	1698	GQ466371.1
8Select seq CY043792.1	Influenza A virus (A/Managua/4444.01/2008(H1N1)) segment 4, complete sequence	Influenza A virus (A/Managua/4444.01/2008(H1N1))	NA	593158	601	601	100%	9e-167	95.48%	1721	CY043792.1
9Select seq CY043776.1	Influenza A virus (A/Managua/5751.01/2008(H1N1)) segment 4, complete sequence	Influenza A virus (A/Managua/5751.01/2008(H1N1))	NA	593155	601	601	100%	9e-167	95.48%	1722	CY043776.1
10Select seq CY040282.1	Influenza A virus (A/Managua/4412.01/2008(H1N1)) segment 4, complete sequence	Influenza A virus (A/Managua/4412.01/2008(H1N1))	NA	582986	601	601	100%	9e-167	95.48%	1731	CY040282.1
11Select seq CY040266.1	Influenza A virus (A/Managua/309.01/2008(H1N1)) segment 4, complete sequence	Influenza A virus (A/Managua/309.01/2008(H1N1))	NA	582978	601	601	100%	9e-167	95.48%	1725	CY040266.1
12Select seq CY040234.1	Influenza A virus (A/Managua/2860.01/2008(H1N1)) segment 4, complete sequence	Influenza A virus (A/Managua/2860.01/2008(H1N1))	NA	582966	601	601	100%	9e-167	95.48%	1722	CY040234.1
13Select seq CY039447.1	Influenza A virus (A/Managua/4315.04/2008(H1N1)) segment 4, complete sequence	Influenza A virus (A/Managua/4315.04/2008(H1N1))	NA	582981	601	601	100%	9e-167	95.48%	1723	CY039447.1
14Select seq CY039151.1	Influenza A virus (A/Managua/5380.01/2008(H1N1)) segment 4, complete sequence	Influenza A virus (A/Managua/5380.01/2008(H1N1))	NA	582990	601	601	100%	9e-167	95.48%	1728	CY039151.1
15Select seq CY039143.1	Influenza A virus (A/Managua/254.01/2008(H1N1)) segment 4, complete sequence	Influenza A virus (A/Managua/254.01/2008(H1N1))	NA	582983	601	601	100%	9e-167	95.48%	1698	CY039143.1
16Select seq CY038927.1	Influenza A virus (A/Managua/4537.03/2008(H1N1)) segment 4, complete sequence	Influenza A virus (A/Managua/4537.03/2008(H1N1))	NA	582989	601	601	100%	9e-167	95.48%	1725	CY038927.1
17Select seq MN250972.1	Influenza A virus (A/MUWRP-Uganda/343/2009(H1N1)) clone 2 segment 4 hemagglutinin (HA) gene, complete cds	Influenza A virus	NA	11320	595	595	100%	4e-165	95.21%	1776	MN250972.1
18Select seq PP825744.1	Influenza A virus (A/Medium MDCK infected cells/Spain/MBC028_Seg4/2010(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus	NA	11320	595	595	100%	4e-165	95.21%	1642	PP825744.1
19Select seq KY925845.1	Influenza A virus (A/Tramandai/LACENRS-324/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds	Influenza A virus (A/Tramandai/LACENRS-324/2009(H1N1))	NA	1978732	595	595	100%	4e-165	95.21%	1775	KY925845.1
20Select seq KY925375.1	Influenza A virus (A/Passo Fundo/LACENRS-1972/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds	Influenza A virus (A/Passo Fundo/LACENRS-1972/2009(H1N1))	NA	1978632	595	595	100%	4e-165	95.21%	1774	KY925375.1
21Select seq AB795882.1	Influenza A virus (A/Sendai/TU66/2008(H1N1)) HA gene for hemagglutinin, partial cds, clone: I08-66-clone70, segment 4	Influenza A virus (A/Sendai/TU66/2008(H1N1))	NA	1301933	595	595	100%	4e-165	95.21%	1692	AB795882.1
22Select seq AB795872.1	Influenza A virus (A/Sendai/TU66/2008(H1N1)) HA gene for hemagglutinin, partial cds, clone: I08-66-clone26, segment 4	Influenza A virus (A/Sendai/TU66/2008(H1N1))	NA	1301933	595	595	100%	4e-165	95.21%	1692	AB795872.1
23Select seq AB795871.1	Influenza A virus (A/Sendai/TU66/2008(H1N1)) HA gene for hemagglutinin, partial cds, segment 4	Influenza A virus (A/Sendai/TU66/2008(H1N1))	NA	1301933	595	595	100%	4e-165	95.21%	1692	AB795871.1
24Select seq KP459346.1	Influenza A virus (A/Singapore/42/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Singapore/42/2008(H1N1))	NA	1599604	595	595	100%	4e-165	95.21%	1695	KP459346.1
25Select seq KP459342.1	Influenza A virus (A/Sydney/16/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Sydney/16/2008(H1N1))	NA	1599695	595	595	100%	4e-165	95.21%	1695	KP459342.1
26Select seq KP459338.1	Influenza A virus (A/Venezuela/3571/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Venezuela/3571/2008(H1N1))	NA	1599912	595	595	100%	4e-165	95.21%	1695	KP459338.1
27Select seq KP459314.1	Influenza A virus (A/Ecuador/5179/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Ecuador/5179/2008(H1N1))	NA	1598657	595	595	100%	4e-165	95.21%	1695	KP459314.1
28Select seq KP459303.1	Influenza A virus (A/Taiwan/835/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Taiwan/835/2007(H1N1))	NA	1599751	595	595	100%	4e-165	95.21%	1695	KP459303.1
29Select seq KP459271.1	Influenza A virus (A/Florida/06/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Florida/06/2008(H1N1))	NA	547350	595	595	100%	4e-165	95.21%	1695	KP459271.1
30Select seq KP459266.1	Influenza A virus (A/North Carolina/05/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/North Carolina/05/2008(H1N1))	NA	535871	595	595	100%	4e-165	95.21%	1695	KP459266.1
31Select seq KP459235.1	Influenza A virus (A/Pennsylvania/01/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Pennsylvania/01/2009(H1N1))	NA	666270	595	595	100%	4e-165	95.21%	1695	KP459235.1
32Select seq KP459152.1	Influenza A virus (A/Sydney/601/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Sydney/601/2009(H1N1))	NA	1599709	595	595	100%	4e-165	95.21%	1695	KP459152.1
33Select seq KP459125.1	Influenza A virus (A/Oklahoma/02/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Oklahoma/02/2008(H1N1))	NA	535872	595	595	100%	4e-165	95.21%	1695	KP459125.1
34Select seq KP459113.1	Influenza A virus (A/Sydney/7/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Sydney/7/2008(H1N1))	NA	598582	595	595	100%	4e-165	95.21%	1695	KP459113.1
35Select seq KP459075.1	Influenza A virus (A/Texas/23/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Texas/23/2008(H1N1))	NA	593969	595	595	100%	4e-165	95.21%	1695	KP459075.1
36Select seq KP459050.1	Influenza A virus (A/Hong Kong/132/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Hong Kong/132/2008(H1N1))	NA	1598830	595	595	100%	4e-165	95.21%	1695	KP459050.1
37Select seq KP459046.1	Influenza A virus (A/Shanghai/LWS1/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Shanghai/LWS1/2009(H1N1))	NA	669911	595	595	100%	4e-165	95.21%	1695	KP459046.1
38Select seq KP459007.1	Influenza A virus (A/Lyon/1337/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Lyon/1337/2007(H1N1))	NA	526904	595	595	100%	4e-165	95.21%	1695	KP459007.1
39Select seq KP458984.1	Influenza A virus (A/Nagasaki/07N035/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Nagasaki/07N035/2008(H1N1))	NA	664592	595	595	100%	4e-165	95.21%	1695	KP458984.1
40Select seq KP458931.1	Influenza A virus (A/Vietnam/241/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Vietnam/241/2008(H1N1))	NA	1599944	595	595	100%	4e-165	95.21%	1695	KP458931.1
41Select seq KP458929.1	Influenza A virus (A/Bangladesh/6666/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Bangladesh/6666/2008(H1N1))	NA	1598295	595	595	100%	4e-165	95.21%	1695	KP458929.1
42Select seq KP458886.1	Influenza A virus (A/Memphis/07/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Memphis/07/2008(H1N1))	NA	535864	595	595	100%	4e-165	95.21%	1695	KP458886.1
43Select seq KP458877.1	Influenza A virus (A/Niigata/07F102/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Niigata/07F102/2008(H1N1))	NA	664593	595	595	100%	4e-165	95.21%	1695	KP458877.1
44Select seq KP458748.1	Influenza A virus (A/Illinois/15/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Illinois/15/2007(H1N1))	NA	529040	595	595	100%	4e-165	95.21%	1695	KP458748.1
45Select seq KP458746.1	Influenza A virus (A/Incheon/4542/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Incheon/4542/2008(H1N1))	NA	1598980	595	595	100%	4e-165	95.21%	1695	KP458746.1
46Select seq KP458736.1	Influenza A virus (A/Florida/18/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Florida/18/2008(H1N1))	NA	593937	595	595	100%	4e-165	95.21%	1695	KP458736.1
47Select seq KP458719.1	Influenza A virus (A/Hong Kong/17/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Hong Kong/17/2008(H1N1))	NA	527167	595	595	100%	4e-165	95.21%	1695	KP458719.1
48Select seq KP458695.1	Influenza A virus (A/Philippines/15/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Philippines/15/2009(H1N1))	NA	1599376	595	595	100%	4e-165	95.21%	1695	KP458695.1
49Select seq KP458688.1	Influenza A virus (A/Stockholm/28/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Stockholm/28/2008(H1N1))	NA	1599664	595	595	100%	4e-165	95.21%	1695	KP458688.1
50Select seq KP458606.1	Influenza A virus (A/Thailand/427/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Thailand/427/2008(H1N1))	NA	1599779	595	595	100%	4e-165	95.21%	1695	KP458606.1
51Select seq KP458593.1	Influenza A virus (A/Singapore/224/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Singapore/224/2008(H1N1))	NA	1599594	595	595	100%	4e-165	95.21%	1695	KP458593.1
52Select seq KP458583.1	Influenza A virus (A/Paris/1704/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Paris/1704/2009(H1N1))	NA	1599317	595	595	100%	4e-165	95.21%	1644	KP458583.1
53Select seq KP458578.1	Influenza A virus (A/Uruguay/08/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Uruguay/08/2008(H1N1))	NA	1599885	595	595	100%	4e-165	95.21%	1695	KP458578.1
54Select seq KP458535.1	Influenza A virus (A/North Carolina/03/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/North Carolina/03/2009(H1N1))	NA	672408	595	595	100%	4e-165	95.21%	1695	KP458535.1
55Select seq KP458478.1	Influenza A virus (A/New Jersey/30/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/New Jersey/30/2008(H1N1))	NA	666315	595	595	100%	4e-165	95.21%	1695	KP458478.1
56Select seq KP458474.1	Influenza A virus (A/Illinois/06/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Illinois/06/2008(H1N1))	NA	535860	595	595	100%	4e-165	95.21%	1695	KP458474.1
57Select seq KP458469.1	Influenza A virus (A/Nagasaki/08N006/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Nagasaki/08N006/2009(H1N1))	NA	654289	595	595	100%	4e-165	95.21%	1695	KP458469.1
58Select seq KP458457.1	Influenza A virus (A/Peru/WRAIR1295P/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Peru/WRAIR1295P/2007(H1N1))	NA	871615	595	595	100%	4e-165	95.21%	1695	KP458457.1
59Select seq KP458453.1	Influenza A virus (A/India/9039/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/India/9039/2008(H1N1))	NA	1599004	595	595	100%	4e-165	95.21%	1695	KP458453.1
60Select seq KP458430.1	Influenza A virus (A/Brisbane/11/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Brisbane/11/2009(H1N1))	NA	1598405	595	595	100%	4e-165	95.21%	1665	KP458430.1
61Select seq KP458410.1	Influenza A virus (A/Victoria/501/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Victoria/501/2008(H1N1))	NA	598583	595	595	100%	4e-165	95.21%	1695	KP458410.1
62Select seq KP458405.1	Influenza A virus (A/Santiago/4689/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Santiago/4689/2008(H1N1))	NA	1599499	595	595	100%	4e-165	95.21%	1695	KP458405.1
63Select seq KP458398.1	Influenza A virus (A/Brisbane/59/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Brisbane/59/2007(H1N1))	NA	504904	595	595	100%	4e-165	95.21%	1695	KP458398.1
64Select seq KP458320.1	Influenza A virus (A/Singapore/104/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Singapore/104/2008(H1N1))	NA	1599587	595	595	100%	4e-165	95.21%	1695	KP458320.1
65Select seq KP458306.1	Influenza A virus (A/Townsville/1/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Townsville/1/2009(H1N1))	NA	1599853	595	595	100%	4e-165	95.21%	1695	KP458306.1
66Select seq KP458303.1	Influenza A virus (A/Korea/7721/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Korea/7721/2008(H1N1))	NA	1599154	595	595	100%	4e-165	95.21%	1695	KP458303.1
67Select seq KP458249.1	Influenza A virus (A/Sydney/605/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Sydney/605/2009(H1N1))	NA	1599711	595	595	100%	4e-165	95.21%	1695	KP458249.1
68Select seq KP458231.1	Influenza A virus (A/Brazil/2410/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Brazil/2410/2008(H1N1))	NA	1598375	595	595	100%	4e-165	95.21%	1695	KP458231.1
69Select seq KP458218.1	Influenza A virus (A/Bangladesh/2020/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Bangladesh/2020/2008(H1N1))	NA	1598278	595	595	100%	4e-165	95.21%	1695	KP458218.1
70Select seq KP458154.1	Influenza A virus (A/Norway/478/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Norway/478/2008(H1N1))	NA	585186	595	595	100%	4e-165	95.21%	1695	KP458154.1
71Select seq KP458144.1	Influenza A virus (A/Iasi/144/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Iasi/144/2008(H1N1))	NA	1598973	595	595	100%	4e-165	95.21%	1695	KP458144.1
72Select seq KP458139.1	Influenza A virus (A/Perth/46/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Perth/46/2008(H1N1))	NA	598579	595	595	100%	4e-165	95.21%	1695	KP458139.1
73Select seq KP458108.1	Influenza A virus (A/Victoria/07159220/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Victoria/07159220/2007(H1N1))	NA	526911	595	595	100%	4e-165	95.21%	1695	KP458108.1
74Select seq KP458067.1	Influenza A virus (A/Vietnam/289/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Vietnam/289/2008(H1N1))	NA	1599945	595	595	100%	4e-165	95.21%	1695	KP458067.1
75Select seq KP457993.1	Influenza A virus (A/Nagasaki/07N020/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Nagasaki/07N020/2008(H1N1))	NA	1610497	595	595	100%	4e-165	95.21%	1695	KP457993.1
76Select seq KP457914.1	Influenza A virus (A/Stockholm/6/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Stockholm/6/2007(H1N1))	NA	1599670	595	595	100%	4e-165	95.21%	1695	KP457914.1
77Select seq KP457895.1	Influenza A virus (A/Taiwan/70013/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Taiwan/70013/2008(H1N1))	NA	627349	595	595	100%	4e-165	95.21%	1695	KP457895.1
78Select seq KP457891.1	Influenza A virus (A/Uruguay/07/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Uruguay/07/2008(H1N1))	NA	1599881	595	595	100%	4e-165	95.21%	1695	KP457891.1
79Select seq KP457874.1	Influenza A virus (A/Perth/33/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Perth/33/2008(H1N1))	NA	598578	595	595	100%	4e-165	95.21%	1695	KP457874.1
80Select seq KP457873.1	Influenza A virus (A/Philippines/4004/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Philippines/4004/2008(H1N1))	NA	1599388	595	595	100%	4e-165	95.21%	1695	KP457873.1
81Select seq KP457855.1	Influenza A virus (A/Illinois/10/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Illinois/10/2007(H1N1))	NA	505536	595	595	100%	4e-165	95.21%	1695	KP457855.1
82Select seq KP457839.1	Influenza A virus (A/Stockholm/8/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Stockholm/8/2009(H1N1))	NA	1599673	595	595	100%	4e-165	95.21%	1695	KP457839.1
83Select seq KP457835.1	Influenza A virus (A/Philippines/1159/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Philippines/1159/2008(H1N1))	NA	598580	595	595	100%	4e-165	95.21%	1695	KP457835.1
84Select seq KP457822.1	Influenza A virus (A/Bangladesh/1009/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Bangladesh/1009/2008(H1N1))	NA	1598271	595	595	100%	4e-165	95.21%	1695	KP457822.1
85Select seq KP457768.1	Influenza A virus (A/South Carolina/WRAIR1112P/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/South Carolina/WRAIR1112P/2009(H1N1))	NA	871596	595	595	100%	4e-165	95.21%	1695	KP457768.1
86Select seq KP457764.1	Influenza A virus (A/Sydney/15/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Sydney/15/2008(H1N1))	NA	1599694	595	595	100%	4e-165	95.21%	1695	KP457764.1
87Select seq KP457753.1	Influenza A virus (A/Hubei Wujiagang/138/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Hubei Wujiagang/138/2009(H1N1))	NA	1598938	595	595	100%	4e-165	95.21%	1695	KP457753.1
88Select seq KP457747.1	Influenza A virus (A/Jilin Chuanying/1318/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Jilin Chuanying/1318/2008(H1N1))	NA	1599069	595	595	100%	4e-165	95.21%	1695	KP457747.1
89Select seq KP457738.1	Influenza A virus (A/Hubei Wujiagang/133/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Hubei Wujiagang/133/2009(H1N1))	NA	1598937	595	595	100%	4e-165	95.21%	1695	KP457738.1
90Select seq KP457707.1	Influenza A virus (A/Hong Kong/549/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Hong Kong/549/2008(H1N1))	NA	1598909	595	595	100%	4e-165	95.21%	1695	KP457707.1
91Select seq KP457700.1	Influenza A virus (A/Norway/171/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Norway/171/2008(H1N1))	NA	585172	595	595	100%	4e-165	95.21%	1695	KP457700.1
92Select seq KP457690.1	Influenza A virus (A/Singapore/609/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Singapore/609/2008(H1N1))	NA	1599618	595	595	100%	4e-165	95.21%	1695	KP457690.1
93Select seq KP457679.1	Influenza A virus (A/Gunma/08G006/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Gunma/08G006/2009(H1N1))	NA	654263	595	595	100%	4e-165	95.21%	1695	KP457679.1
94Select seq KP457660.1	Influenza A virus (A/Sydney/10/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Sydney/10/2008(H1N1))	NA	1599688	595	595	100%	4e-165	95.21%	1695	KP457660.1
95Select seq KP457610.1	Influenza A virus (A/Vietnam/160/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Vietnam/160/2008(H1N1))	NA	1599935	595	595	100%	4e-165	95.21%	1695	KP457610.1
96Select seq KP457602.1	Influenza A virus (A/New Caledonia/6/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/New Caledonia/6/2008(H1N1))	NA	598577	595	595	100%	4e-165	95.21%	1695	KP457602.1
97Select seq KP457572.1	Influenza A virus (A/New Jersey/04/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/New Jersey/04/2008(H1N1))	NA	511637	595	595	100%	4e-165	95.21%	1695	KP457572.1
98Select seq KP457545.1	Influenza A virus (A/Tennessee/11/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/Tennessee/11/2008(H1N1))	NA	593968	595	595	100%	4e-165	95.21%	1695	KP457545.1
99Select seq KP457516.1	Influenza A virus (A/South Dakota/02/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	Influenza A virus (A/South Dakota/02/2008(H1N1))	NA	535874	595	595	100%	4e-165	95.21%	1695	KP457516.1
100Select seq MW298176.1	Synthetic construct HA-A/New_York/08-1326/2008_R3delPB1_H1N1 gene, complete cds	synthetic construct	NA	32630	595	595	100%	4e-165	95.21%	1775	MW298176.1

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  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
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Distribution of the top 100 Blast Hits on 100 subject sequences

Query

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Alignments

100 sequences selected
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Influenza A virus (A/swine/Mexico/AVX50/2013(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds

Sequence ID: KU976738.1Length: 1775Number of Matches: 1

Range 1: 1318 to 1693GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
601 bits(325)	9e-167()	359/376(95%)	0/376(0%)	Plus/Plus

Query  1     ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGATTCTACTGGAAAATGAAA  60
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1318  ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGGTTCTACTGGAAAATGAAA  1377

Query  61    GGACTTTGGATTTCCATGATTCCAATGTGAAGAATCTTTATGAGAAAGTAAAAAGCCAGT  120
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1378  GGACTTTGGATTTTCATGATTCCAATGTGAAGAATCTTTATGAGAAAGTAAAAAGCCAGT  1437

Query  121   TGAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAGTTCTATCACAAGTGTAACG  180
             | |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct  1438  TAAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAATTCTACCACAAGTGTAATG  1497

Query  181   ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTACCCAAAATACTCCGAGGAAT  240
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  1498  ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTATCCAAAATACTCCGAAGAAT  1557

Query  241   CAAAGCTAAACAGGGAGGAAATTGATGGAGTGAGATTGGAATCAATGGGAATCTATCAGA  300
             ||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct  1558  CAAAGTTAAACAGGGAGAAAATTGATGGAGTGAAATTGGAATCAATGGGAGTCTATCAGA  1617

Query  301   TTCTGGCAATCTACTCAACAGTCGCCAGTTCTATTGTTCTTTTCGTCTCCCTGGGGGCAA  360
             ||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct  1618  TTCTGGCGATCTACTCAACAGTCGCCAGTTCTCTTGTTCTTTTGGTCTCCCTGGGGGCAA  1677

Query  361   TCACCTTTTGGATGTG  376
             ||| ||| ||||||||
Sbjct  1678  TCAGCTTCTGGATGTG  1693

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Influenza A virus (A/Peru/WRAIR1311P/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds

Sequence ID: KP457133.1Length: 1695Number of Matches: 1

Range 1: 1286 to 1661GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
601 bits(325)	9e-167()	359/376(95%)	0/376(0%)	Plus/Plus

Query  1     ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGATTCTACTGGAAAATGAAA  60
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1286  ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGGTTCTACTGGAAAATGAAA  1345

Query  61    GGACTTTGGATTTCCATGATTCCAATGTGAAGAATCTTTATGAGAAAGTAAAAAGCCAGT  120
             ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct  1346  GGACTTTGGATTTCCATGACTCCAATGTGAAGAATCTGTATGAGAAAGTAAAAAGCCAGT  1405

Query  121   TGAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAGTTCTATCACAAGTGTAACG  180
             | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1406  TAAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAATTCTATCACAAGTGTAACG  1465

Query  181   ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTACCCAAAATACTCCGAGGAAT  240
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  1466  ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTATCCAAAATACTCCGAAGAAT  1525

Query  241   CAAAGCTAAACAGGGAGGAAATTGATGGAGTGAGATTGGAATCAATGGGAATCTATCAGA  300
             ||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct  1526  CAAAGTTAAACAGGGAGAAAATTGATGGAGTGAAATTGGAATCAATGGGAGTCTATCAGA  1585

Query  301   TTCTGGCAATCTACTCAACAGTCGCCAGTTCTATTGTTCTTTTCGTCTCCCTGGGGGCAA  360
             ||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct  1586  TTCTGGCGATCTACTCAACAGTCGCCAGTTCTCTGGTTCTTTTGGTCTCCCTGGGGGCAA  1645

Query  361   TCACCTTTTGGATGTG  376
             ||| ||| ||||||||
Sbjct  1646  TCAGCTTCTGGATGTG  1661

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Influenza A virus (A/Stockholm/7/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds

Sequence ID: KP456704.1Length: 1695Number of Matches: 1

Range 1: 1286 to 1661GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
601 bits(325)	9e-167()	359/376(95%)	0/376(0%)	Plus/Plus

Query  1     ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGATTCTACTGGAAAATGAAA  60
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1286  ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGGTTCTACTGGAAAATGAAA  1345

Query  61    GGACTTTGGATTTCCATGATTCCAATGTGAAGAATCTTTATGAGAAAGTAAAAAGCCAGT  120
             ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1346  GGACTTTGGATTTCCATGACTCCAATGTGAAGAATCTTTATGAGAAAGTAAAAAGCCAGT  1405

Query  121   TGAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAGTTCTATCACAAGTGTAACG  180
             | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1406  TAAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAATTCTATCACAAGTGTAACG  1465

Query  181   ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTACCCAAAATACTCCGAGGAAT  240
             |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct  1466  ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTATCCAAAATATTCCGAAGAAT  1525

Query  241   CAAAGCTAAACAGGGAGGAAATTGATGGAGTGAGATTGGAATCAATGGGAATCTATCAGA  300
             ||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct  1526  CAAAGTTAAACAGGGAGAAAATTGATGGAGTGAAATTGGAATCAATGGGAGTCTATCAGA  1585

Query  301   TTCTGGCAATCTACTCAACAGTCGCCAGTTCTATTGTTCTTTTCGTCTCCCTGGGGGCAA  360
             ||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct  1586  TTCTGGCGATCTACTCAACAGTCGCCAGTTCTCTGGTTCTTTTGGTCTCCCTGGGGGCAA  1645

Query  361   TCACCTTTTGGATGTG  376
             ||| ||| ||||||||
Sbjct  1646  TCAGCTTCTGGATGTG  1661

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Influenza A virus (A/Peru/WRAIR1311P/2007(H1N1)) segment 4 sequence

Sequence ID: CY070104.1Length: 1728Number of Matches: 1

Range 1: 1286 to 1661GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
601 bits(325)	9e-167()	359/376(95%)	0/376(0%)	Plus/Plus

Query  1     ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGATTCTACTGGAAAATGAAA  60
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1286  ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGGTTCTACTGGAAAATGAAA  1345

Query  61    GGACTTTGGATTTCCATGATTCCAATGTGAAGAATCTTTATGAGAAAGTAAAAAGCCAGT  120
             ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct  1346  GGACTTTGGATTTCCATGACTCCAATGTGAAGAATCTGTATGAGAAAGTAAAAAGCCAGT  1405

Query  121   TGAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAGTTCTATCACAAGTGTAACG  180
             | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1406  TAAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAATTCTATCACAAGTGTAACG  1465

Query  181   ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTACCCAAAATACTCCGAGGAAT  240
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  1466  ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTATCCAAAATACTCCGAAGAAT  1525

Query  241   CAAAGCTAAACAGGGAGGAAATTGATGGAGTGAGATTGGAATCAATGGGAATCTATCAGA  300
             ||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct  1526  CAAAGTTAAACAGGGAGAAAATTGATGGAGTGAAATTGGAATCAATGGGAGTCTATCAGA  1585

Query  301   TTCTGGCAATCTACTCAACAGTCGCCAGTTCTATTGTTCTTTTCGTCTCCCTGGGGGCAA  360
             ||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct  1586  TTCTGGCGATCTACTCAACAGTCGCCAGTTCTCTGGTTCTTTTGGTCTCCCTGGGGGCAA  1645

Query  361   TCACCTTTTGGATGTG  376
             ||| ||| ||||||||
Sbjct  1646  TCAGCTTCTGGATGTG  1661

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Influenza A virus (A/Thailand/CU-B685/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds

Sequence ID: GU183807.1Length: 1784Number of Matches: 1

Range 1: 1324 to 1699GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
601 bits(325)	9e-167()	359/376(95%)	0/376(0%)	Plus/Plus

Query  1     ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGATTCTACTGGAAAATGAAA  60
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1324  ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGGTTCTACTGGAAAATGAAA  1383

Query  61    GGACTTTGGATTTCCATGATTCCAATGTGAAGAATCTTTATGAGAAAGTAAAAAGCCAGT  120
             ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct  1384  GGACTTTGGATTTCCATGACTCCAATGTGAAGAATCTGTATGAGAAAGTAAAAAGCCAGT  1443

Query  121   TGAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAGTTCTATCACAAGTGTAACG  180
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1444  TAAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAGTTCTATCACAAGTGTAACG  1503

Query  181   ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTACCCAAAATACTCCGAGGAAT  240
             |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct  1504  ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTATCCAAAATATTCCGAAGAAT  1563

Query  241   CAAAGCTAAACAGGGAGGAAATTGATGGAGTGAGATTGGAATCAATGGGAATCTATCAGA  300
             ||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct  1564  CAAAGTTAAACAGGGAGAAAATTGATGGAGTGAAATTGGAATCAATGGGAGTCTATCAGA  1623

Query  301   TTCTGGCAATCTACTCAACAGTCGCCAGTTCTATTGTTCTTTTCGTCTCCCTGGGGGCAA  360
             ||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct  1624  TTCTGGCGATCTACTCAACAGTCGCCAGTTCTCTGGTTCTTTTGGTCTCCCTGGGGGCAA  1683

Query  361   TCACCTTTTGGATGTG  376
             ||| ||| ||||||||
Sbjct  1684  TCAGCTTCTGGATGTG  1699

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Influenza A virus (A/Thailand/CU-B589/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds

Sequence ID: GU183799.1Length: 1784Number of Matches: 1

Range 1: 1324 to 1699GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
601 bits(325)	9e-167()	359/376(95%)	0/376(0%)	Plus/Plus

Query  1     ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGATTCTACTGGAAAATGAAA  60
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1324  ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGGTTCTACTGGAAAATGAAA  1383

Query  61    GGACTTTGGATTTCCATGATTCCAATGTGAAGAATCTTTATGAGAAAGTAAAAAGCCAGT  120
             ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct  1384  GGACTTTGGATTTCCATGACTCCAATGTGAAGAATCTGTATGAGAAAGTAAAAAGCCAGT  1443

Query  121   TGAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAGTTCTATCACAAGTGTAACG  180
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1444  TGAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAATTCTATCACAAGTGTAACG  1503

Query  181   ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTACCCAAAATACTCCGAGGAAT  240
             |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct  1504  ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTATCCAAAATATTCCGAAGAAT  1563

Query  241   CAAAGCTAAACAGGGAGGAAATTGATGGAGTGAGATTGGAATCAATGGGAATCTATCAGA  300
             ||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct  1564  CAAAGTTAAACAGGGAGAAAATTGATGGAGTGAAATTGGAATCAATGGGAGTCTATCAGA  1623

Query  301   TTCTGGCAATCTACTCAACAGTCGCCAGTTCTATTGTTCTTTTCGTCTCCCTGGGGGCAA  360
             ||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct  1624  TTCTGGCGATCTACTCAACAGTCGCCAGTTCTCTGGTTCTTTTGGTCTCCCTGGGGGCAA  1683

Query  361   TCACCTTTTGGATGTG  376
             ||| ||| ||||||||
Sbjct  1684  TCAGCTTCTGGATGTG  1699

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Influenza A virus (A/North Carolina/07/2008(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds

Sequence ID: GQ466371.1Length: 1698Number of Matches: 1

Range 1: 1286 to 1661GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
601 bits(325)	9e-167()	359/376(95%)	0/376(0%)	Plus/Plus

Query  1     ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGATTCTACTGGAAAATGAAA  60
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1286  ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGGTTCTACTGGAAAATGAAA  1345

Query  61    GGACTTTGGATTTCCATGATTCCAATGTGAAGAATCTTTATGAGAAAGTAAAAAGCCAGT  120
             ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct  1346  GGACTTTGGATTTCCATGACTCCAATGTGAAGAATCTGTATGAGAAAGTAAAAAGCCAGT  1405

Query  121   TGAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAGTTCTATCACAAGTGTAACG  180
             | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1406  TAAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAATTCTATCACAAGTGTAACG  1465

Query  181   ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTACCCAAAATACTCCGAGGAAT  240
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  1466  ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTATCCAAAATACTCCGAAGAAT  1525

Query  241   CAAAGCTAAACAGGGAGGAAATTGATGGAGTGAGATTGGAATCAATGGGAATCTATCAGA  300
             ||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct  1526  CAAAGTTAAACAGGGAGAAAATTGATGGAGTGAAATTGGAATCAATGGGAGTCTATCAGA  1585

Query  301   TTCTGGCAATCTACTCAACAGTCGCCAGTTCTATTGTTCTTTTCGTCTCCCTGGGGGCAA  360
             ||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct  1586  TTCTGGCGATCTACTCAACAGTCGCCAGTTCTCTGGTTCTTTTGGTCTCCCTGGGGGCAA  1645

Query  361   TCACCTTTTGGATGTG  376
             ||| ||| ||||||||
Sbjct  1646  TCAGCTTCTGGATGTG  1661

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Influenza A virus (A/Managua/4444.01/2008(H1N1)) segment 4, complete sequence

Sequence ID: CY043792.1Length: 1721Number of Matches: 1

Range 1: 1286 to 1661GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
601 bits(325)	9e-167()	359/376(95%)	0/376(0%)	Plus/Plus

Query  1     ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGATTCTACTGGAAAATGAAA  60
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1286  ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGGTTCTACTGGAAAATGAAA  1345

Query  61    GGACTTTGGATTTCCATGATTCCAATGTGAAGAATCTTTATGAGAAAGTAAAAAGCCAGT  120
             ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct  1346  GGACTTTGGATTTCCATGACTCCAATGTGAAGAATCTGTATGAGAAAGTAAAAAGCCAGT  1405

Query  121   TGAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAGTTCTATCACAAGTGTAACG  180
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1406  TGAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAATTCTATCACAAGTGTAACG  1465

Query  181   ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTACCCAAAATACTCCGAGGAAT  240
             |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct  1466  ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTATCCAAAATATTCCGAAGAAT  1525

Query  241   CAAAGCTAAACAGGGAGGAAATTGATGGAGTGAGATTGGAATCAATGGGAATCTATCAGA  300
             ||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct  1526  CAAAGTTAAACAGGGAGAAAATTGATGGAGTGAAATTGGAATCAATGGGAGTCTATCAGA  1585

Query  301   TTCTGGCAATCTACTCAACAGTCGCCAGTTCTATTGTTCTTTTCGTCTCCCTGGGGGCAA  360
             ||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct  1586  TTCTGGCGATCTACTCAACAGTCGCCAGTTCTCTGGTTCTTTTGGTCTCCCTGGGGGCAA  1645

Query  361   TCACCTTTTGGATGTG  376
             ||| ||| ||||||||
Sbjct  1646  TCAGCTTCTGGATGTG  1661

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Influenza A virus (A/Managua/5751.01/2008(H1N1)) segment 4, complete sequence

Sequence ID: CY043776.1Length: 1722Number of Matches: 1

Range 1: 1287 to 1662GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
601 bits(325)	9e-167()	359/376(95%)	0/376(0%)	Plus/Plus

Query  1     ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGATTCTACTGGAAAATGAAA  60
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1287  ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGGTTCTACTGGAAAATGAAA  1346

Query  61    GGACTTTGGATTTCCATGATTCCAATGTGAAGAATCTTTATGAGAAAGTAAAAAGCCAGT  120
             ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct  1347  GGACTTTGGATTTCCATGACTCCAATGTGAAGAATCTGTATGAGAAAGTAAAAAGCCAGT  1406

Query  121   TGAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAGTTCTATCACAAGTGTAACG  180
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1407  TGAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAATTCTATCACAAGTGTAACG  1466

Query  181   ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTACCCAAAATACTCCGAGGAAT  240
             |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct  1467  ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTATCCAAAATATTCCGAAGAAT  1526

Query  241   CAAAGCTAAACAGGGAGGAAATTGATGGAGTGAGATTGGAATCAATGGGAATCTATCAGA  300
             ||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct  1527  CAAAGTTAAACAGGGAGAAAATTGATGGAGTGAAATTGGAATCAATGGGAGTCTATCAGA  1586

Query  301   TTCTGGCAATCTACTCAACAGTCGCCAGTTCTATTGTTCTTTTCGTCTCCCTGGGGGCAA  360
             ||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct  1587  TTCTGGCGATCTACTCAACAGTCGCCAGTTCTCTGGTTCTTTTGGTCTCCCTGGGGGCAA  1646

Query  361   TCACCTTTTGGATGTG  376
             ||| ||| ||||||||
Sbjct  1647  TCAGCTTCTGGATGTG  1662

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Influenza A virus (A/Managua/4412.01/2008(H1N1)) segment 4, complete sequence

Sequence ID: CY040282.1Length: 1731Number of Matches: 1

Range 1: 1293 to 1668GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
601 bits(325)	9e-167()	359/376(95%)	0/376(0%)	Plus/Plus

Query  1     ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGATTCTACTGGAAAATGAAA  60
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1293  ATGGGTTTATAGACATTTGGACATATAATGCAGAACTGTTGGTTCTACTGGAAAATGAAA  1352

Query  61    GGACTTTGGATTTCCATGATTCCAATGTGAAGAATCTTTATGAGAAAGTAAAAAGCCAGT  120
             ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct  1353  GGACTTTGGATTTCCATGACTCCAATGTGAAGAATCTGTATGAGAAAGTAAAAAGCCAGT  1412

Query  121   TGAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAGTTCTATCACAAGTGTAACG  180
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1413  TGAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAATTCTATCACAAGTGTAACG  1472

Query  181   ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTACCCAAAATACTCCGAGGAAT  240
             |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct  1473  ATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTATCCAAAATATTCCGAAGAAT  1532

Query  241   CAAAGCTAAACAGGGAGGAAATTGATGGAGTGAGATTGGAATCAATGGGAATCTATCAGA  300
             ||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct  1533  CAAAGTTAAACAGGGAGAAAATTGATGGAGTGAAATTGGAATCAATGGGAGTCTATCAGA  1592

Query  301   TTCTGGCAATCTACTCAACAGTCGCCAGTTCTATTGTTCTTTTCGTCTCCCTGGGGGCAA  360
             ||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct  1593  TTCTGGCGATCTACTCAACAGTCGCCAGTTCTCTGGTTCTTTTGGTCTCCCTGGGGGCAA  1652

Query  361   TCACCTTTTGGATGTG  376
             ||| ||| ||||||||
Sbjct  1653  TCAGCTTCTGGATGTG  1668

Taxonomy

100 sequences selected
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Lineage

Organism

Organism Report
Description	Score	E value	Accession
Influenza A virus (A/swine/Mexico/AVX50/2013(H1N2)) [viruses] Next Previous First
Influenza A virus (A/swine/Mexico/AVX50/2013(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds	601	9e-167	KU976738
Influenza A virus (A/Peru/WRAIR1311P/2007(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Peru/WRAIR1311P/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	601	9e-167	KP457133
Influenza A virus (A/Peru/WRAIR1311P/2007(H1N1)) segment 4 sequence	601	9e-167	CY070104
Influenza A virus (A/Stockholm/7/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Stockholm/7/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	601	9e-167	KP456704
Influenza A virus (A/Thailand/CU-B685/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Thailand/CU-B685/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds	601	9e-167	GU183807
Influenza A virus (A/Thailand/CU-B589/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Thailand/CU-B589/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds	601	9e-167	GU183799
Influenza A virus (A/North Carolina/07/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/North Carolina/07/2008(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds	601	9e-167	GQ466371
Influenza A virus (A/Managua/4444.01/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Managua/4444.01/2008(H1N1)) segment 4, complete sequence	601	9e-167	CY043792
Influenza A virus (A/Managua/5751.01/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Managua/5751.01/2008(H1N1)) segment 4, complete sequence	601	9e-167	CY043776
Influenza A virus (A/Managua/4412.01/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Managua/4412.01/2008(H1N1)) segment 4, complete sequence	601	9e-167	CY040282
Influenza A virus (A/Managua/309.01/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Managua/309.01/2008(H1N1)) segment 4, complete sequence	601	9e-167	CY040266
Influenza A virus (A/Managua/2860.01/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Managua/2860.01/2008(H1N1)) segment 4, complete sequence	601	9e-167	CY040234
Influenza A virus (A/Managua/4315.04/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Managua/4315.04/2008(H1N1)) segment 4, complete sequence	601	9e-167	CY039447
Influenza A virus (A/Managua/5380.01/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Managua/5380.01/2008(H1N1)) segment 4, complete sequence	601	9e-167	CY039151
Influenza A virus (A/Managua/254.01/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Managua/254.01/2008(H1N1)) segment 4, complete sequence	601	9e-167	CY039143
Influenza A virus (A/Managua/3418.01/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Managua/3418.01/2008(H1N1)) segment 4, complete sequence	601	9e-167	CY043736
Influenza A virus (A/Managua/4537.03/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Managua/4537.03/2008(H1N1)) segment 4, complete sequence	601	9e-167	CY038927
Influenza A virus [viruses] Next Previous First
Influenza A virus (A/MUWRP-Uganda/343/2009(H1N1)) clone 2 segment 4 hemagglutinin (HA) gene, complete cds	595	4e-165	MN250972
Influenza A virus (A/Medium MDCK infected cells/Spain/MBC028_Seg4/2010(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	PP825744
Influenza A virus (A/Tramandai/LACENRS-324/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Tramandai/LACENRS-324/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds	595	4e-165	KY925845
Influenza A virus (A/Passo Fundo/LACENRS-1972/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Passo Fundo/LACENRS-1972/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds	595	4e-165	KY925375
Influenza A virus (A/Sendai/TU66/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Sendai/TU66/2008(H1N1)) HA gene for hemagglutinin, partial cds, clone: I08-66-clone70, segment 4	595	4e-165	AB795882
Influenza A virus (A/Sendai/TU66/2008(H1N1)) HA gene for hemagglutinin, partial cds, clone: I08-66-clone26, segment 4	595	4e-165	AB795872
Influenza A virus (A/Sendai/TU66/2008(H1N1)) HA gene for hemagglutinin, partial cds, clone: I08-66-clone42, segment 4	595	4e-165	AB795873
Influenza A virus (A/Sendai/TU66/2008(H1N1)) HA gene for hemagglutinin, partial cds, clone: I08-66-clone43, segment 4	595	4e-165	AB795874
Influenza A virus (A/Sendai/TU66/2008(H1N1)) HA gene for hemagglutinin, partial cds, clone: I08-66-clone44, segment 4	595	4e-165	AB795875
Influenza A virus (A/Sendai/TU66/2008(H1N1)) HA gene for hemagglutinin, partial cds, clone: I08-66-clone45, segment 4	595	4e-165	AB795876
Influenza A virus (A/Sendai/TU66/2008(H1N1)) HA gene for hemagglutinin, partial cds, clone: I08-66-clone46, segment 4	595	4e-165	AB795877
Influenza A virus (A/Sendai/TU66/2008(H1N1)) HA gene for hemagglutinin, partial cds, clone: I08-66-clone67, segment 4	595	4e-165	AB795880
Influenza A virus (A/Sendai/TU66/2008(H1N1)) HA gene for hemagglutinin, partial cds, clone: I08-66-clone68, segment 4	595	4e-165	AB795881
Influenza A virus (A/Sendai/TU66/2008(H1N1)) HA gene for hemagglutinin, partial cds, clone: I08-66-clone71, segment 4	595	4e-165	AB795883
Influenza A virus (A/Sendai/TU66/2008(H1N1)) HA gene for hemagglutinin, partial cds, segment 4	595	4e-165	AB795871
Influenza A virus (A/Sendai/TU66/2008(H1N1)) HA gene for hemagglutinin, partial cds, clone: I08-66-clone60, segment 4	595	4e-165	AB795878
Influenza A virus (A/Sendai/TU66/2008(H1N1)) HA gene for hemagglutinin, partial cds, clone: I08-66-clone63, segment 4	595	4e-165	AB795879
Influenza A virus (A/Singapore/42/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Singapore/42/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP459346
Influenza A virus (A/Sydney/16/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Sydney/16/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP459342
Influenza A virus (A/Venezuela/3571/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Venezuela/3571/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP459338
Influenza A virus (A/Ecuador/5179/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Ecuador/5179/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP459314
Influenza A virus (A/Taiwan/835/2007(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Taiwan/835/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP459303
Influenza A virus (A/Florida/06/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Florida/06/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP459271
Influenza A virus (A/North Carolina/05/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/North Carolina/05/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP459266
Influenza A virus (A/Pennsylvania/01/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Pennsylvania/01/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP459235
Influenza A virus (A/Sydney/601/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Sydney/601/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP459152
Influenza A virus (A/Oklahoma/02/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Oklahoma/02/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP459125
Influenza A virus (A/Sydney/7/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Sydney/7/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP459113
Influenza A virus (A/Texas/23/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Texas/23/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP459075
Influenza A virus (A/Hong Kong/132/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Hong Kong/132/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP459050
Influenza A virus (A/Shanghai/LWS1/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Shanghai/LWS1/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP459046
Influenza A virus (A/Lyon/1337/2007(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Lyon/1337/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP459007
Influenza A virus (A/Nagasaki/07N035/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Nagasaki/07N035/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458984
Influenza A virus (A/Vietnam/241/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Vietnam/241/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458931
Influenza A virus (A/Bangladesh/6666/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Bangladesh/6666/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458929
Influenza A virus (A/Memphis/07/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Memphis/07/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458886
Influenza A virus (A/Niigata/07F102/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Niigata/07F102/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458877
Influenza A virus (A/Illinois/15/2007(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Illinois/15/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458748
Influenza A virus (A/Incheon/4542/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Incheon/4542/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458746
Influenza A virus (A/Florida/18/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Florida/18/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458736
Influenza A virus (A/Hong Kong/17/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Hong Kong/17/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458719
Influenza A virus (A/Philippines/15/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Philippines/15/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458695
Influenza A virus (A/Stockholm/28/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Stockholm/28/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458688
Influenza A virus (A/Thailand/427/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Thailand/427/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458606
Influenza A virus (A/Singapore/224/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Singapore/224/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458593
Influenza A virus (A/Paris/1704/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Paris/1704/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458583
Influenza A virus (A/Uruguay/08/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Uruguay/08/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458578
Influenza A virus (A/North Carolina/03/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/North Carolina/03/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458535
Influenza A virus (A/New Jersey/30/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/New Jersey/30/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458478
Influenza A virus (A/Illinois/06/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Illinois/06/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458474
Influenza A virus (A/Nagasaki/08N006/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Nagasaki/08N006/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458469
Influenza A virus (A/Peru/WRAIR1295P/2007(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Peru/WRAIR1295P/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458457
Influenza A virus (A/India/9039/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/India/9039/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458453
Influenza A virus (A/Brisbane/11/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Brisbane/11/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458430
Influenza A virus (A/Victoria/501/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Victoria/501/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458410
Influenza A virus (A/Santiago/4689/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Santiago/4689/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458405
Influenza A virus (A/Brisbane/59/2007(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Brisbane/59/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458398
Influenza A virus (A/Singapore/104/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Singapore/104/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458320
Influenza A virus (A/Townsville/1/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Townsville/1/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458306
Influenza A virus (A/Brisbane/13/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Brisbane/13/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458621
Influenza A virus (A/Korea/7721/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Korea/7721/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458303
Influenza A virus (A/Sydney/605/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Sydney/605/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458249
Influenza A virus (A/Brazil/2410/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Brazil/2410/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458231
Influenza A virus (A/Bangladesh/2020/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Bangladesh/2020/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458218
Influenza A virus (A/Norway/478/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Norway/478/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458154
Influenza A virus (A/Yokohama/78/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Yokohama/78/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP459227
Influenza A virus (A/Iasi/144/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Iasi/144/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458144
Influenza A virus (A/Perth/46/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Perth/46/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458139
Influenza A virus (A/Victoria/07159220/2007(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Victoria/07159220/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458108
Influenza A virus (A/Vietnam/289/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Vietnam/289/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458067
Influenza A virus (A/Nagasaki/07N020/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Nagasaki/07N020/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457993
Influenza A virus (A/Stockholm/6/2007(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Stockholm/6/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457914
Influenza A virus (A/Taiwan/70013/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Taiwan/70013/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457895
Influenza A virus (A/Uruguay/07/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Uruguay/07/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457891
Influenza A virus (A/Perth/33/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Perth/33/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457874
Influenza A virus (A/Philippines/4004/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Philippines/4004/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457873
Influenza A virus (A/Illinois/10/2007(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Illinois/10/2007(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457855
Influenza A virus (A/Stockholm/8/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Stockholm/8/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457839
Influenza A virus (A/Philippines/1159/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Philippines/1159/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457835
Influenza A virus (A/Bangladesh/1009/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Bangladesh/1009/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457822
Influenza A virus (A/South Carolina/WRAIR1112P/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/South Carolina/WRAIR1112P/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457768
Influenza A virus (A/Sydney/15/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Sydney/15/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457764
Influenza A virus (A/Sydney/11/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Sydney/11/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458330
Influenza A virus (A/Sydney/9/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Sydney/9/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP458741
Influenza A virus (A/Hubei Wujiagang/138/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Hubei Wujiagang/138/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457753
Influenza A virus (A/Jilin Chuanying/1318/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Jilin Chuanying/1318/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457747
Influenza A virus (A/Hubei Wujiagang/133/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Hubei Wujiagang/133/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457738
Influenza A virus (A/Hong Kong/549/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Hong Kong/549/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457707
Influenza A virus (A/Norway/171/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Norway/171/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457700
Influenza A virus (A/Singapore/609/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Singapore/609/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457690
Influenza A virus (A/Gunma/08G006/2009(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Gunma/08G006/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457679
Influenza A virus (A/Sydney/10/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Sydney/10/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457660
Influenza A virus (A/Vietnam/160/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Vietnam/160/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457610
Influenza A virus (A/New Caledonia/6/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/New Caledonia/6/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457602
Influenza A virus (A/New Jersey/04/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/New Jersey/04/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457572
Influenza A virus (A/Tennessee/11/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/Tennessee/11/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457545
Influenza A virus (A/South Dakota/02/2008(H1N1)) [viruses] Next Previous First
Influenza A virus (A/South Dakota/02/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds	595	4e-165	KP457516
synthetic construct [other sequences] Next Previous First
Synthetic construct HA-A/New_York/08-1326/2008_R3delPB1_H1N1 gene, complete cds	595	4e-165	MW298176

Taxonomy

Organism	Blast Name	Score	Number of Hits	Description
root			115
.Alphainfluenzavirus influenzae	viruses		114
..Influenza A virus	viruses		2
...Influenza A virus (A/swine/Mexico/AVX50/2013(H1N2))	viruses	601	1	Influenza A virus (A/swine/Mexico/AVX50/2013(H1N2)) hits
...Influenza A virus (A/Peru/WRAIR1311P/2007(H1N1))	viruses	601	2	Influenza A virus (A/Peru/WRAIR1311P/2007(H1N1)) hits
...Influenza A virus (A/Stockholm/7/2009(H1N1))	viruses	601	1	Influenza A virus (A/Stockholm/7/2009(H1N1)) hits
...Influenza A virus (A/Thailand/CU-B685/2009(H1N1))	viruses	601	1	Influenza A virus (A/Thailand/CU-B685/2009(H1N1)) hits
...Influenza A virus (A/Thailand/CU-B589/2009(H1N1))	viruses	601	1	Influenza A virus (A/Thailand/CU-B589/2009(H1N1)) hits
...Influenza A virus (A/North Carolina/07/2008(H1N1))	viruses	601	1	Influenza A virus (A/North Carolina/07/2008(H1N1)) hits
...Influenza A virus (A/Managua/4444.01/2008(H1N1))	viruses	601	1	Influenza A virus (A/Managua/4444.01/2008(H1N1)) hits
...Influenza A virus (A/Managua/5751.01/2008(H1N1))	viruses	601	1	Influenza A virus (A/Managua/5751.01/2008(H1N1)) hits
...Influenza A virus (A/Managua/4412.01/2008(H1N1))	viruses	601	1	Influenza A virus (A/Managua/4412.01/2008(H1N1)) hits
...Influenza A virus (A/Managua/309.01/2008(H1N1))	viruses	601	1	Influenza A virus (A/Managua/309.01/2008(H1N1)) hits
...Influenza A virus (A/Managua/2860.01/2008(H1N1))	viruses	601	1	Influenza A virus (A/Managua/2860.01/2008(H1N1)) hits
...Influenza A virus (A/Managua/4315.04/2008(H1N1))	viruses	601	1	Influenza A virus (A/Managua/4315.04/2008(H1N1)) hits
...Influenza A virus (A/Managua/5380.01/2008(H1N1))	viruses	601	1	Influenza A virus (A/Managua/5380.01/2008(H1N1)) hits
...Influenza A virus (A/Managua/254.01/2008(H1N1))	viruses	601	1	Influenza A virus (A/Managua/254.01/2008(H1N1)) hits
...Influenza A virus (A/Managua/3418.01/2008(H1N1))	viruses	601	1	Influenza A virus (A/Managua/3418.01/2008(H1N1)) hits
...Influenza A virus (A/Managua/4537.03/2008(H1N1))	viruses	601	1	Influenza A virus (A/Managua/4537.03/2008(H1N1)) hits
...Influenza A virus (A/Tramandai/LACENRS-324/2009(H1N1))	viruses	595	1	Influenza A virus (A/Tramandai/LACENRS-324/2009(H1N1)) hits
...Influenza A virus (A/Passo Fundo/LACENRS-1972/2009(H1N1))	viruses	595	1	Influenza A virus (A/Passo Fundo/LACENRS-1972/2009(H1N1)) hits
...Influenza A virus (A/Sendai/TU66/2008(H1N1))	viruses	595	13	Influenza A virus (A/Sendai/TU66/2008(H1N1)) hits
...Influenza A virus (A/Singapore/42/2008(H1N1))	viruses	595	1	Influenza A virus (A/Singapore/42/2008(H1N1)) hits
...Influenza A virus (A/Sydney/16/2008(H1N1))	viruses	595	1	Influenza A virus (A/Sydney/16/2008(H1N1)) hits
...Influenza A virus (A/Venezuela/3571/2008(H1N1))	viruses	595	1	Influenza A virus (A/Venezuela/3571/2008(H1N1)) hits
...Influenza A virus (A/Ecuador/5179/2008(H1N1))	viruses	595	1	Influenza A virus (A/Ecuador/5179/2008(H1N1)) hits
...Influenza A virus (A/Taiwan/835/2007(H1N1))	viruses	595	1	Influenza A virus (A/Taiwan/835/2007(H1N1)) hits
...Influenza A virus (A/Florida/06/2008(H1N1))	viruses	595	1	Influenza A virus (A/Florida/06/2008(H1N1)) hits
...Influenza A virus (A/North Carolina/05/2008(H1N1))	viruses	595	1	Influenza A virus (A/North Carolina/05/2008(H1N1)) hits
...Influenza A virus (A/Pennsylvania/01/2009(H1N1))	viruses	595	1	Influenza A virus (A/Pennsylvania/01/2009(H1N1)) hits
...Influenza A virus (A/Sydney/601/2009(H1N1))	viruses	595	1	Influenza A virus (A/Sydney/601/2009(H1N1)) hits
...Influenza A virus (A/Oklahoma/02/2008(H1N1))	viruses	595	1	Influenza A virus (A/Oklahoma/02/2008(H1N1)) hits
...Influenza A virus (A/Sydney/7/2008(H1N1))	viruses	595	1	Influenza A virus (A/Sydney/7/2008(H1N1)) hits
...Influenza A virus (A/Texas/23/2008(H1N1))	viruses	595	1	Influenza A virus (A/Texas/23/2008(H1N1)) hits
...Influenza A virus (A/Hong Kong/132/2008(H1N1))	viruses	595	1	Influenza A virus (A/Hong Kong/132/2008(H1N1)) hits
...Influenza A virus (A/Shanghai/LWS1/2009(H1N1))	viruses	595	1	Influenza A virus (A/Shanghai/LWS1/2009(H1N1)) hits
...Influenza A virus (A/Lyon/1337/2007(H1N1))	viruses	595	1	Influenza A virus (A/Lyon/1337/2007(H1N1)) hits
...Influenza A virus (A/Nagasaki/07N035/2008(H1N1))	viruses	595	1	Influenza A virus (A/Nagasaki/07N035/2008(H1N1)) hits
...Influenza A virus (A/Vietnam/241/2008(H1N1))	viruses	595	1	Influenza A virus (A/Vietnam/241/2008(H1N1)) hits
...Influenza A virus (A/Bangladesh/6666/2008(H1N1))	viruses	595	1	Influenza A virus (A/Bangladesh/6666/2008(H1N1)) hits
...Influenza A virus (A/Memphis/07/2008(H1N1))	viruses	595	1	Influenza A virus (A/Memphis/07/2008(H1N1)) hits
...Influenza A virus (A/Niigata/07F102/2008(H1N1))	viruses	595	1	Influenza A virus (A/Niigata/07F102/2008(H1N1)) hits
...Influenza A virus (A/Illinois/15/2007(H1N1))	viruses	595	1	Influenza A virus (A/Illinois/15/2007(H1N1)) hits
...Influenza A virus (A/Incheon/4542/2008(H1N1))	viruses	595	1	Influenza A virus (A/Incheon/4542/2008(H1N1)) hits
...Influenza A virus (A/Florida/18/2008(H1N1))	viruses	595	1	Influenza A virus (A/Florida/18/2008(H1N1)) hits
...Influenza A virus (A/Hong Kong/17/2008(H1N1))	viruses	595	1	Influenza A virus (A/Hong Kong/17/2008(H1N1)) hits
...Influenza A virus (A/Philippines/15/2009(H1N1))	viruses	595	1	Influenza A virus (A/Philippines/15/2009(H1N1)) hits
...Influenza A virus (A/Stockholm/28/2008(H1N1))	viruses	595	1	Influenza A virus (A/Stockholm/28/2008(H1N1)) hits
...Influenza A virus (A/Thailand/427/2008(H1N1))	viruses	595	1	Influenza A virus (A/Thailand/427/2008(H1N1)) hits
...Influenza A virus (A/Singapore/224/2008(H1N1))	viruses	595	1	Influenza A virus (A/Singapore/224/2008(H1N1)) hits
...Influenza A virus (A/Paris/1704/2009(H1N1))	viruses	595	1	Influenza A virus (A/Paris/1704/2009(H1N1)) hits
...Influenza A virus (A/Uruguay/08/2008(H1N1))	viruses	595	1	Influenza A virus (A/Uruguay/08/2008(H1N1)) hits
...Influenza A virus (A/North Carolina/03/2009(H1N1))	viruses	595	1	Influenza A virus (A/North Carolina/03/2009(H1N1)) hits
...Influenza A virus (A/New Jersey/30/2008(H1N1))	viruses	595	1	Influenza A virus (A/New Jersey/30/2008(H1N1)) hits
...Influenza A virus (A/Illinois/06/2008(H1N1))	viruses	595	1	Influenza A virus (A/Illinois/06/2008(H1N1)) hits
...Influenza A virus (A/Nagasaki/08N006/2009(H1N1))	viruses	595	1	Influenza A virus (A/Nagasaki/08N006/2009(H1N1)) hits
...Influenza A virus (A/Peru/WRAIR1295P/2007(H1N1))	viruses	595	1	Influenza A virus (A/Peru/WRAIR1295P/2007(H1N1)) hits
...Influenza A virus (A/India/9039/2008(H1N1))	viruses	595	1	Influenza A virus (A/India/9039/2008(H1N1)) hits
...Influenza A virus (A/Brisbane/11/2009(H1N1))	viruses	595	1	Influenza A virus (A/Brisbane/11/2009(H1N1)) hits
...Influenza A virus (A/Victoria/501/2008(H1N1))	viruses	595	1	Influenza A virus (A/Victoria/501/2008(H1N1)) hits
...Influenza A virus (A/Santiago/4689/2008(H1N1))	viruses	595	1	Influenza A virus (A/Santiago/4689/2008(H1N1)) hits
...Influenza A virus (A/Brisbane/59/2007(H1N1))	viruses	595	1	Influenza A virus (A/Brisbane/59/2007(H1N1)) hits
...Influenza A virus (A/Singapore/104/2008(H1N1))	viruses	595	1	Influenza A virus (A/Singapore/104/2008(H1N1)) hits
...Influenza A virus (A/Townsville/1/2009(H1N1))	viruses	595	1	Influenza A virus (A/Townsville/1/2009(H1N1)) hits
...Influenza A virus (A/Brisbane/13/2009(H1N1))	viruses	595	1	Influenza A virus (A/Brisbane/13/2009(H1N1)) hits
...Influenza A virus (A/Korea/7721/2008(H1N1))	viruses	595	1	Influenza A virus (A/Korea/7721/2008(H1N1)) hits
...Influenza A virus (A/Sydney/605/2009(H1N1))	viruses	595	1	Influenza A virus (A/Sydney/605/2009(H1N1)) hits
...Influenza A virus (A/Brazil/2410/2008(H1N1))	viruses	595	1	Influenza A virus (A/Brazil/2410/2008(H1N1)) hits
...Influenza A virus (A/Bangladesh/2020/2008(H1N1))	viruses	595	1	Influenza A virus (A/Bangladesh/2020/2008(H1N1)) hits
...Influenza A virus (A/Norway/478/2008(H1N1))	viruses	595	1	Influenza A virus (A/Norway/478/2008(H1N1)) hits
...Influenza A virus (A/Yokohama/78/2008(H1N1))	viruses	595	1	Influenza A virus (A/Yokohama/78/2008(H1N1)) hits
...Influenza A virus (A/Iasi/144/2008(H1N1))	viruses	595	1	Influenza A virus (A/Iasi/144/2008(H1N1)) hits
...Influenza A virus (A/Perth/46/2008(H1N1))	viruses	595	1	Influenza A virus (A/Perth/46/2008(H1N1)) hits
...Influenza A virus (A/Victoria/07159220/2007(H1N1))	viruses	595	1	Influenza A virus (A/Victoria/07159220/2007(H1N1)) hits
...Influenza A virus (A/Vietnam/289/2008(H1N1))	viruses	595	1	Influenza A virus (A/Vietnam/289/2008(H1N1)) hits
...Influenza A virus (A/Nagasaki/07N020/2008(H1N1))	viruses	595	1	Influenza A virus (A/Nagasaki/07N020/2008(H1N1)) hits
...Influenza A virus (A/Stockholm/6/2007(H1N1))	viruses	595	1	Influenza A virus (A/Stockholm/6/2007(H1N1)) hits
...Influenza A virus (A/Taiwan/70013/2008(H1N1))	viruses	595	1	Influenza A virus (A/Taiwan/70013/2008(H1N1)) hits
...Influenza A virus (A/Uruguay/07/2008(H1N1))	viruses	595	1	Influenza A virus (A/Uruguay/07/2008(H1N1)) hits
...Influenza A virus (A/Perth/33/2008(H1N1))	viruses	595	1	Influenza A virus (A/Perth/33/2008(H1N1)) hits
...Influenza A virus (A/Philippines/4004/2008(H1N1))	viruses	595	1	Influenza A virus (A/Philippines/4004/2008(H1N1)) hits
...Influenza A virus (A/Illinois/10/2007(H1N1))	viruses	595	1	Influenza A virus (A/Illinois/10/2007(H1N1)) hits
...Influenza A virus (A/Stockholm/8/2009(H1N1))	viruses	595	1	Influenza A virus (A/Stockholm/8/2009(H1N1)) hits
...Influenza A virus (A/Philippines/1159/2008(H1N1))	viruses	595	1	Influenza A virus (A/Philippines/1159/2008(H1N1)) hits
...Influenza A virus (A/Bangladesh/1009/2008(H1N1))	viruses	595	1	Influenza A virus (A/Bangladesh/1009/2008(H1N1)) hits
...Influenza A virus (A/South Carolina/WRAIR1112P/2009(H1N1))	viruses	595	1	Influenza A virus (A/South Carolina/WRAIR1112P/2009(H1N1)) hits
...Influenza A virus (A/Sydney/15/2008(H1N1))	viruses	595	1	Influenza A virus (A/Sydney/15/2008(H1N1)) hits
...Influenza A virus (A/Sydney/11/2008(H1N1))	viruses	595	1	Influenza A virus (A/Sydney/11/2008(H1N1)) hits
...Influenza A virus (A/Sydney/9/2008(H1N1))	viruses	595	1	Influenza A virus (A/Sydney/9/2008(H1N1)) hits
...Influenza A virus (A/Hubei Wujiagang/138/2009(H1N1))	viruses	595	1	Influenza A virus (A/Hubei Wujiagang/138/2009(H1N1)) hits
...Influenza A virus (A/Jilin Chuanying/1318/2008(H1N1))	viruses	595	1	Influenza A virus (A/Jilin Chuanying/1318/2008(H1N1)) hits
...Influenza A virus (A/Hubei Wujiagang/133/2009(H1N1))	viruses	595	1	Influenza A virus (A/Hubei Wujiagang/133/2009(H1N1)) hits
...Influenza A virus (A/Hong Kong/549/2008(H1N1))	viruses	595	1	Influenza A virus (A/Hong Kong/549/2008(H1N1)) hits
...Influenza A virus (A/Norway/171/2008(H1N1))	viruses	595	1	Influenza A virus (A/Norway/171/2008(H1N1)) hits
...Influenza A virus (A/Singapore/609/2008(H1N1))	viruses	595	1	Influenza A virus (A/Singapore/609/2008(H1N1)) hits
...Influenza A virus (A/Gunma/08G006/2009(H1N1))	viruses	595	1	Influenza A virus (A/Gunma/08G006/2009(H1N1)) hits
...Influenza A virus (A/Sydney/10/2008(H1N1))	viruses	595	1	Influenza A virus (A/Sydney/10/2008(H1N1)) hits
...Influenza A virus (A/Vietnam/160/2008(H1N1))	viruses	595	1	Influenza A virus (A/Vietnam/160/2008(H1N1)) hits
...Influenza A virus (A/New Caledonia/6/2008(H1N1))	viruses	595	1	Influenza A virus (A/New Caledonia/6/2008(H1N1)) hits
...Influenza A virus (A/New Jersey/04/2008(H1N1))	viruses	595	1	Influenza A virus (A/New Jersey/04/2008(H1N1)) hits
...Influenza A virus (A/Tennessee/11/2008(H1N1))	viruses	595	1	Influenza A virus (A/Tennessee/11/2008(H1N1)) hits
...Influenza A virus (A/South Dakota/02/2008(H1N1))	viruses	595	1	Influenza A virus (A/South Dakota/02/2008(H1N1)) hits
..Influenza A virus	viruses	595	2	Influenza A virus hits
.synthetic construct	other sequences	595	1	synthetic construct hits

Taxonomy	Number of hits	Number of Organisms	Description
root	115	101
. Alphainfluenzavirus influenzae	114	100
.. Influenza A virus	2	100	Influenza A virus hits
... Influenza A virus (A/swine/Mexico/AVX50/2013(H1N2))	1	1	Influenza A virus (A/swine/Mexico/AVX50/2013(H1N2)) hits
... H1N1 subtype	111	98
.... Influenza A virus (A/Peru/WRAIR1311P/2007(H1N1))	2	1	Influenza A virus (A/Peru/WRAIR1311P/2007(H1N1)) hits
.... Influenza A virus (A/Stockholm/7/2009(H1N1))	1	1	Influenza A virus (A/Stockholm/7/2009(H1N1)) hits
.... Influenza A virus (A/Thailand/CU-B685/2009(H1N1))	1	1	Influenza A virus (A/Thailand/CU-B685/2009(H1N1)) hits
.... Influenza A virus (A/Thailand/CU-B589/2009(H1N1))	1	1	Influenza A virus (A/Thailand/CU-B589/2009(H1N1)) hits
.... Influenza A virus (A/North Carolina/07/2008(H1N1))	1	1	Influenza A virus (A/North Carolina/07/2008(H1N1)) hits
.... Influenza A virus (A/Managua/4444.01/2008(H1N1))	1	1	Influenza A virus (A/Managua/4444.01/2008(H1N1)) hits
.... Influenza A virus (A/Managua/5751.01/2008(H1N1))	1	1	Influenza A virus (A/Managua/5751.01/2008(H1N1)) hits
.... Influenza A virus (A/Managua/4412.01/2008(H1N1))	1	1	Influenza A virus (A/Managua/4412.01/2008(H1N1)) hits
.... Influenza A virus (A/Managua/309.01/2008(H1N1))	1	1	Influenza A virus (A/Managua/309.01/2008(H1N1)) hits
.... Influenza A virus (A/Managua/2860.01/2008(H1N1))	1	1	Influenza A virus (A/Managua/2860.01/2008(H1N1)) hits
.... Influenza A virus (A/Managua/4315.04/2008(H1N1))	1	1	Influenza A virus (A/Managua/4315.04/2008(H1N1)) hits
.... Influenza A virus (A/Managua/5380.01/2008(H1N1))	1	1	Influenza A virus (A/Managua/5380.01/2008(H1N1)) hits
.... Influenza A virus (A/Managua/254.01/2008(H1N1))	1	1	Influenza A virus (A/Managua/254.01/2008(H1N1)) hits
.... Influenza A virus (A/Managua/3418.01/2008(H1N1))	1	1	Influenza A virus (A/Managua/3418.01/2008(H1N1)) hits
.... Influenza A virus (A/Managua/4537.03/2008(H1N1))	1	1	Influenza A virus (A/Managua/4537.03/2008(H1N1)) hits
.... Influenza A virus (A/Tramandai/LACENRS-324/2009(H1N1))	1	1	Influenza A virus (A/Tramandai/LACENRS-324/2009(H1N1)) hits
.... Influenza A virus (A/Passo Fundo/LACENRS-1972/2009(H1N1))	1	1	Influenza A virus (A/Passo Fundo/LACENRS-1972/2009(H1N1)) hits
.... Influenza A virus (A/Sendai/TU66/2008(H1N1))	13	1	Influenza A virus (A/Sendai/TU66/2008(H1N1)) hits
.... Influenza A virus (A/Singapore/42/2008(H1N1))	1	1	Influenza A virus (A/Singapore/42/2008(H1N1)) hits
.... Influenza A virus (A/Sydney/16/2008(H1N1))	1	1	Influenza A virus (A/Sydney/16/2008(H1N1)) hits
.... Influenza A virus (A/Venezuela/3571/2008(H1N1))	1	1	Influenza A virus (A/Venezuela/3571/2008(H1N1)) hits
.... Influenza A virus (A/Ecuador/5179/2008(H1N1))	1	1	Influenza A virus (A/Ecuador/5179/2008(H1N1)) hits
.... Influenza A virus (A/Taiwan/835/2007(H1N1))	1	1	Influenza A virus (A/Taiwan/835/2007(H1N1)) hits
.... Influenza A virus (A/Florida/06/2008(H1N1))	1	1	Influenza A virus (A/Florida/06/2008(H1N1)) hits
.... Influenza A virus (A/North Carolina/05/2008(H1N1))	1	1	Influenza A virus (A/North Carolina/05/2008(H1N1)) hits
.... Influenza A virus (A/Pennsylvania/01/2009(H1N1))	1	1	Influenza A virus (A/Pennsylvania/01/2009(H1N1)) hits
.... Influenza A virus (A/Sydney/601/2009(H1N1))	1	1	Influenza A virus (A/Sydney/601/2009(H1N1)) hits
.... Influenza A virus (A/Oklahoma/02/2008(H1N1))	1	1	Influenza A virus (A/Oklahoma/02/2008(H1N1)) hits
.... Influenza A virus (A/Sydney/7/2008(H1N1))	1	1	Influenza A virus (A/Sydney/7/2008(H1N1)) hits
.... Influenza A virus (A/Texas/23/2008(H1N1))	1	1	Influenza A virus (A/Texas/23/2008(H1N1)) hits
.... Influenza A virus (A/Hong Kong/132/2008(H1N1))	1	1	Influenza A virus (A/Hong Kong/132/2008(H1N1)) hits
.... Influenza A virus (A/Shanghai/LWS1/2009(H1N1))	1	1	Influenza A virus (A/Shanghai/LWS1/2009(H1N1)) hits
.... Influenza A virus (A/Lyon/1337/2007(H1N1))	1	1	Influenza A virus (A/Lyon/1337/2007(H1N1)) hits
.... Influenza A virus (A/Nagasaki/07N035/2008(H1N1))	1	1	Influenza A virus (A/Nagasaki/07N035/2008(H1N1)) hits
.... Influenza A virus (A/Vietnam/241/2008(H1N1))	1	1	Influenza A virus (A/Vietnam/241/2008(H1N1)) hits
.... Influenza A virus (A/Bangladesh/6666/2008(H1N1))	1	1	Influenza A virus (A/Bangladesh/6666/2008(H1N1)) hits
.... Influenza A virus (A/Memphis/07/2008(H1N1))	1	1	Influenza A virus (A/Memphis/07/2008(H1N1)) hits
.... Influenza A virus (A/Niigata/07F102/2008(H1N1))	1	1	Influenza A virus (A/Niigata/07F102/2008(H1N1)) hits
.... Influenza A virus (A/Illinois/15/2007(H1N1))	1	1	Influenza A virus (A/Illinois/15/2007(H1N1)) hits
.... Influenza A virus (A/Incheon/4542/2008(H1N1))	1	1	Influenza A virus (A/Incheon/4542/2008(H1N1)) hits
.... Influenza A virus (A/Florida/18/2008(H1N1))	1	1	Influenza A virus (A/Florida/18/2008(H1N1)) hits
.... Influenza A virus (A/Hong Kong/17/2008(H1N1))	1	1	Influenza A virus (A/Hong Kong/17/2008(H1N1)) hits
.... Influenza A virus (A/Philippines/15/2009(H1N1))	1	1	Influenza A virus (A/Philippines/15/2009(H1N1)) hits
.... Influenza A virus (A/Stockholm/28/2008(H1N1))	1	1	Influenza A virus (A/Stockholm/28/2008(H1N1)) hits
.... Influenza A virus (A/Thailand/427/2008(H1N1))	1	1	Influenza A virus (A/Thailand/427/2008(H1N1)) hits
.... Influenza A virus (A/Singapore/224/2008(H1N1))	1	1	Influenza A virus (A/Singapore/224/2008(H1N1)) hits
.... Influenza A virus (A/Paris/1704/2009(H1N1))	1	1	Influenza A virus (A/Paris/1704/2009(H1N1)) hits
.... Influenza A virus (A/Uruguay/08/2008(H1N1))	1	1	Influenza A virus (A/Uruguay/08/2008(H1N1)) hits
.... Influenza A virus (A/North Carolina/03/2009(H1N1))	1	1	Influenza A virus (A/North Carolina/03/2009(H1N1)) hits
.... Influenza A virus (A/New Jersey/30/2008(H1N1))	1	1	Influenza A virus (A/New Jersey/30/2008(H1N1)) hits
.... Influenza A virus (A/Illinois/06/2008(H1N1))	1	1	Influenza A virus (A/Illinois/06/2008(H1N1)) hits
.... Influenza A virus (A/Nagasaki/08N006/2009(H1N1))	1	1	Influenza A virus (A/Nagasaki/08N006/2009(H1N1)) hits
.... Influenza A virus (A/Peru/WRAIR1295P/2007(H1N1))	1	1	Influenza A virus (A/Peru/WRAIR1295P/2007(H1N1)) hits
.... Influenza A virus (A/India/9039/2008(H1N1))	1	1	Influenza A virus (A/India/9039/2008(H1N1)) hits
.... Influenza A virus (A/Brisbane/11/2009(H1N1))	1	1	Influenza A virus (A/Brisbane/11/2009(H1N1)) hits
.... Influenza A virus (A/Victoria/501/2008(H1N1))	1	1	Influenza A virus (A/Victoria/501/2008(H1N1)) hits
.... Influenza A virus (A/Santiago/4689/2008(H1N1))	1	1	Influenza A virus (A/Santiago/4689/2008(H1N1)) hits
.... Influenza A virus (A/Brisbane/59/2007(H1N1))	1	1	Influenza A virus (A/Brisbane/59/2007(H1N1)) hits
.... Influenza A virus (A/Singapore/104/2008(H1N1))	1	1	Influenza A virus (A/Singapore/104/2008(H1N1)) hits
.... Influenza A virus (A/Townsville/1/2009(H1N1))	1	1	Influenza A virus (A/Townsville/1/2009(H1N1)) hits
.... Influenza A virus (A/Brisbane/13/2009(H1N1))	1	1	Influenza A virus (A/Brisbane/13/2009(H1N1)) hits
.... Influenza A virus (A/Korea/7721/2008(H1N1))	1	1	Influenza A virus (A/Korea/7721/2008(H1N1)) hits
.... Influenza A virus (A/Sydney/605/2009(H1N1))	1	1	Influenza A virus (A/Sydney/605/2009(H1N1)) hits
.... Influenza A virus (A/Brazil/2410/2008(H1N1))	1	1	Influenza A virus (A/Brazil/2410/2008(H1N1)) hits
.... Influenza A virus (A/Bangladesh/2020/2008(H1N1))	1	1	Influenza A virus (A/Bangladesh/2020/2008(H1N1)) hits
.... Influenza A virus (A/Norway/478/2008(H1N1))	1	1	Influenza A virus (A/Norway/478/2008(H1N1)) hits
.... Influenza A virus (A/Yokohama/78/2008(H1N1))	1	1	Influenza A virus (A/Yokohama/78/2008(H1N1)) hits
.... Influenza A virus (A/Iasi/144/2008(H1N1))	1	1	Influenza A virus (A/Iasi/144/2008(H1N1)) hits
.... Influenza A virus (A/Perth/46/2008(H1N1))	1	1	Influenza A virus (A/Perth/46/2008(H1N1)) hits
.... Influenza A virus (A/Victoria/07159220/2007(H1N1))	1	1	Influenza A virus (A/Victoria/07159220/2007(H1N1)) hits
.... Influenza A virus (A/Vietnam/289/2008(H1N1))	1	1	Influenza A virus (A/Vietnam/289/2008(H1N1)) hits
.... Influenza A virus (A/Nagasaki/07N020/2008(H1N1))	1	1	Influenza A virus (A/Nagasaki/07N020/2008(H1N1)) hits
.... Influenza A virus (A/Stockholm/6/2007(H1N1))	1	1	Influenza A virus (A/Stockholm/6/2007(H1N1)) hits
.... Influenza A virus (A/Taiwan/70013/2008(H1N1))	1	1	Influenza A virus (A/Taiwan/70013/2008(H1N1)) hits
.... Influenza A virus (A/Uruguay/07/2008(H1N1))	1	1	Influenza A virus (A/Uruguay/07/2008(H1N1)) hits
.... Influenza A virus (A/Perth/33/2008(H1N1))	1	1	Influenza A virus (A/Perth/33/2008(H1N1)) hits
.... Influenza A virus (A/Philippines/4004/2008(H1N1))	1	1	Influenza A virus (A/Philippines/4004/2008(H1N1)) hits
.... Influenza A virus (A/Illinois/10/2007(H1N1))	1	1	Influenza A virus (A/Illinois/10/2007(H1N1)) hits
.... Influenza A virus (A/Stockholm/8/2009(H1N1))	1	1	Influenza A virus (A/Stockholm/8/2009(H1N1)) hits
.... Influenza A virus (A/Philippines/1159/2008(H1N1))	1	1	Influenza A virus (A/Philippines/1159/2008(H1N1)) hits
.... Influenza A virus (A/Bangladesh/1009/2008(H1N1))	1	1	Influenza A virus (A/Bangladesh/1009/2008(H1N1)) hits
.... Influenza A virus (A/South Carolina/WRAIR1112P/2009(H1N1))	1	1	Influenza A virus (A/South Carolina/WRAIR1112P/2009(H1N1)) hits
.... Influenza A virus (A/Sydney/15/2008(H1N1))	1	1	Influenza A virus (A/Sydney/15/2008(H1N1)) hits
.... Influenza A virus (A/Sydney/11/2008(H1N1))	1	1	Influenza A virus (A/Sydney/11/2008(H1N1)) hits
.... Influenza A virus (A/Sydney/9/2008(H1N1))	1	1	Influenza A virus (A/Sydney/9/2008(H1N1)) hits
.... Influenza A virus (A/Hubei Wujiagang/138/2009(H1N1))	1	1	Influenza A virus (A/Hubei Wujiagang/138/2009(H1N1)) hits
.... Influenza A virus (A/Jilin Chuanying/1318/2008(H1N1))	1	1	Influenza A virus (A/Jilin Chuanying/1318/2008(H1N1)) hits
.... Influenza A virus (A/Hubei Wujiagang/133/2009(H1N1))	1	1	Influenza A virus (A/Hubei Wujiagang/133/2009(H1N1)) hits
.... Influenza A virus (A/Hong Kong/549/2008(H1N1))	1	1	Influenza A virus (A/Hong Kong/549/2008(H1N1)) hits
.... Influenza A virus (A/Norway/171/2008(H1N1))	1	1	Influenza A virus (A/Norway/171/2008(H1N1)) hits
.... Influenza A virus (A/Singapore/609/2008(H1N1))	1	1	Influenza A virus (A/Singapore/609/2008(H1N1)) hits
.... Influenza A virus (A/Gunma/08G006/2009(H1N1))	1	1	Influenza A virus (A/Gunma/08G006/2009(H1N1)) hits
.... Influenza A virus (A/Sydney/10/2008(H1N1))	1	1	Influenza A virus (A/Sydney/10/2008(H1N1)) hits
.... Influenza A virus (A/Vietnam/160/2008(H1N1))	1	1	Influenza A virus (A/Vietnam/160/2008(H1N1)) hits
.... Influenza A virus (A/New Caledonia/6/2008(H1N1))	1	1	Influenza A virus (A/New Caledonia/6/2008(H1N1)) hits
.... Influenza A virus (A/New Jersey/04/2008(H1N1))	1	1	Influenza A virus (A/New Jersey/04/2008(H1N1)) hits
.... Influenza A virus (A/Tennessee/11/2008(H1N1))	1	1	Influenza A virus (A/Tennessee/11/2008(H1N1)) hits
.... Influenza A virus (A/South Dakota/02/2008(H1N1))	1	1	Influenza A virus (A/South Dakota/02/2008(H1N1)) hits
. synthetic construct	1	1	synthetic construct hits

Filter Results

Sequences producing significant alignments