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Birkhäuser

Plant Systems Biology

  • Book
  • © 2007

Overview

Editors:
  1. Sacha Baginsky

    1. Institute of Plant Sciences, Swiss Federal Institute of Technology, ETH Zentrum, LFW E, Zürich, Switzerland

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  2. Alisdair R. Fernie

    1. MPI for Molecular Plant Physiology, Golm, Germany

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    You can also search for this editor in PubMed   Google Scholar

  • A timely view of the state of the art in systems biology
  • Although the focus is on plant systems biology, the proposed material could be suitably applied to any organism
  • Includes supplementary material: sn.pub/extras

Part of the book series: Experientia Supplementum (EXS, volume 97)

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About this book

Systems biology represents the integration and application of various technologies that share a common goal of measuring globally the properties of a specific biological sample. These combined data describe and monitor the complex networks that exist within each cell, tissue and organism, and can be used to generate predictive models of the behavior of the system. This volume aims to provide a timely view of the "state of the art" in systems biology. The editors take the opportunity to define systems biology as they and the contributing authors see it, and this will lay the groundwork for future studies. The volume is well-suited to both students and researchers interested in the methods of systems biology. Although the focus is on plant systems biology, the proposed material could be suitably applied to any organism.

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Table of contents (14 chapters)

  1. Front Matter

    Pages I-XIII
    Download chapter PDF

  2. Introduction to systems biology

    • Frank J. Bruggeman, Jorrit J. Hornberg, Fred C. Boogerd, Hans V. Westerhoff
    Pages 1-19

  3. Natural and artificially induced genetic variability in crop and model plant species for plant systems biology

    • Christophe Rothan, Mathilde Causse
    Pages 21-53

  4. Transcriptional profiling approaches to understanding how plants regulate growth and defence: A case study illustrated by analysis of the role of vitamin C

    • Christine H. Foyer, Guy Kiddle, Paul Verrier
    Pages 55-86

  5. Case studies for transcriptional profiling

    • Lars Hennig, Claudia Köhler
    Pages 87-97

  6. Regulatory small RNAs in plants

    • Cameron Johnson, Venkatesan Sundaresan
    Pages 99-113

  7. Differential display and protein quantification

    • Erich Brunner, Bertran Gerrits, Mike Scott, Bernd Roschitzki
    Pages 115-140

  8. Protein identification using mass spectrometry: A method overview

    • Sven Schuchardt, Albert Sickmann
    Pages 141-170

  9. Methods, applications and concepts of metabolite profiling: Primary metabolism

    • Dirk Steinhauser, Joachim Kopka
    Pages 171-194

  10. Methods, applications and concepts of metabolite profiling: Secondary metabolism

    • Lloyd W. Sumner, David V. Huhman, Ewa Urbanczyk-Wochniak, Zhentian Lei
    Pages 195-212

  11. Metabolic flux analysis: Recent advances in carbon metabolism in plants

    • Martine Dieuaide-Noubhani, Ana-Paula Alonso, Dominique Rolin, Wolfgang Eisenreich, Philippe Raymond
    Pages 213-243

  12. Network visualization and network analysis

    • Victoria J. Nikiforova, Lothar Willmitzer
    Pages 245-275

  13. Current challenges and approaches for the synergistic use of systems biology data in the scientific community

    • Christian H. Ahrens, Ulrich Wagner, Hubert K. Rehrauer, Can Türker, Ralph Schlapbach
    Pages 277-307

  14. Integrated data analysis for genome-wide research

    • Matthias Steinfath, Dirk Repsilber, Matthias Scholz, Dirk Walther, Joachim Selbig
    Pages 309-329

  15. Network analysis of systems elements

    • Daniel Schöner, Simon Barkow, Stefan Bleuler, Anja Wille, Philip Zimmermann, Peter Bühlmann et al.
    Pages 331-351

  16. Back Matter

    Pages 353-357
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Editors and Affiliations

  • Institute of Plant Sciences, Swiss Federal Institute of Technology, ETH Zentrum, LFW E, Zürich, Switzerland

    Sacha Baginsky

  • MPI for Molecular Plant Physiology, Golm, Germany

    Alisdair R. Fernie

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