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Research Article

Potent neutralization of Rift Valley fever virus by human monoclonal antibodies through fusion inhibition

Nathaniel S. Chapman, View ORCID ProfileHaiyan Zhao, Nurgun Kose, Jonna B. Westover, Birte Kalveram, Robin Bombardi, Jessica Rodriguez, Rachel Sutton, Joseph Genualdi, View ORCID ProfileA. Desiree LaBeaud, View ORCID ProfileFrancis M. Mutuku, View ORCID ProfilePhillip R. Pittman, View ORCID ProfileAlexander N. Freiberg, View ORCID ProfileBrian B. Gowen, View ORCID ProfileDaved H. Fremont, and View ORCID ProfileJames E. Crowe Jr

    See allHide authors and affiliations

    PNAS April 6, 2021 118 (14) e2025642118; https://doi.org/10.1073/pnas.2025642118
    1. Edited by Rino Rappuoli, Fondazione Toscana Life Sciences, Siena, Italy, and approved February 22, 2021 (received for review December 15, 2020)

    This article has been updated
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    Significance

    Rift Valley fever virus (RVFV)–specific monoclonal antibodies from survivors of natural infection and vaccination were isolated to understand how RVFV is targeted for neutralization by the human immune system. These antibodies bind to specific regions of the viral surface, some of which are complex quaternary epitopes, and they block RVFV infection at extremely low concentrations. A new mechanism by which these mAbs can neutralize RVFV is described whereby the antibody may prevent necessary structural rearrangements in the viral proteins for infection. The antibodies isolated here have potential use in pre-exposure prophylaxis or post-exposure therapy against RVFV infection and should be studied further in that context.

    Abstract

    Rift Valley fever virus (RVFV), an emerging arboviral and zoonotic bunyavirus, causes severe disease in livestock and humans. Here, we report the isolation of a panel of monoclonal antibodies (mAbs) from the B cells of immune individuals following natural infection in Kenya or immunization with MP-12 vaccine. The B cell responses of individuals who were vaccinated or naturally infected recognized similar epitopes on both Gc and Gn proteins. The Gn-specific mAbs and two mAbs that do not recognize either monomeric Gc or Gn alone but recognized the hetero-oligomer glycoprotein complex (Gc+Gn) when Gc and Gn were coexpressed exhibited potent neutralizing activities in vitro, while Gc-specific mAbs exhibited relatively lower neutralizing capacity. The two Gc+Gn–specific mAbs and the Gn domain A-specific mAbs inhibited RVFV fusion to cells, suggesting that mAbs can inhibit the exposure of the fusion loop in Gc, a class II fusion protein, and thus prevent fusion by an indirect mechanism without direct fusion loop contact. Competition-binding analysis with coexpressed Gc/Gn and mutagenesis library screening indicated that these mAbs recognize four major antigenic sites, with two sites of vulnerability for neutralization on Gn. In experimental models of infection in mice, representative mAbs recognizing three of the antigenic sites reduced morbidity and mortality when used at a low dose in both prophylactic and therapeutic settings. This study identifies multiple candidate mAbs that may be suitable for use in humans against RVFV infection and highlights fusion inhibition against bunyaviruses as a potential contributor to potent antibody-mediated neutralization.

    • Rift Valley fever virus
    • antibodies
    • monoclonal
    • adaptive immunity
    • virus internalization
    • Phlebovirus

    Footnotes

    • ↵1To whom correspondence may be addressed. Email: james.crowe@vumc.org.
    • Author contributions: N.S.C., H.Z., A.D.L., D.H.F., and J.E.C. designed research; N.S.C., H.Z., N.K., J.B.W., B.K., R.B., J.R., R.S., J.G., F.M.M., A.N.F., and B.B.G. performed research; P.R.P. contributed new reagents/analytic tools; N.S.C., H.Z., N.K., J.B.W., R.B., A.N.F., B.B.G., D.H.F., and J.E.C. analyzed data; and N.S.C. and J.E.C. wrote the paper.

    • Competing interest statement: J.E.C. has served as a consultant for Luna Biologics and Eli Lilly; is on the Scientific Advisory Boards of CompuVax and Meissa Vaccines; is a recipient of previous or active unrelated research grants from Astra Zeneca, Takeda, and IDBiologics; and is a founder of IDBiologics. Vanderbilt University has applied for patents concerning RVFV antibodies that are related to this work.

    • This article is a PNAS Direct Submission.

    • This article contains supporting information online at https://www.pnas.org/lookup/suppl/doi:10.1073/pnas.2025642118/-/DCSupplemental.

    Data Availability

    All study data are included in the article and/or SI Appendix.

    Change History

    March 31, 2021: Fig. 3 has been updated.

    Published under the PNAS license.

    References

    1. ↵
      1. S. C. Weaver,
      2. W. K. Reisen
      , Present and future arboviral threats. Antiviral Res. 85, 328–345 (2010).
      CrossRefPubMedGoogle Scholar
    2. ↵
      1. R. Daubney,
      2. J. R. Hudson,
      3. P. C. Garnham
      , Enzootic hepatitis or Rift Valley fever. An undescribed virus disease of sheep cattle and man from east africa. J. Pathol. 34, 545–579 (1931).
      CrossRefGoogle Scholar
    3. ↵
      1. A. Anyamba et al
      ., Prediction of a rift Valley fever outbreak. Proc. Natl. Acad. Sci. U.S.A. 106, 955–959 (2009).
      Abstract/FREE Full TextGoogle Scholar
    4. ↵
      1. WHO
      , Rift Valley fever. World Health Organization (2018). https://www.who.int/news-room/fact-sheets/detail/rift-valley-fever. Accessed 16 November 2020.
      Google Scholar
    5. ↵
      1. M. Baudin et al
      ., Association of rift Valley fever virus infection with miscarriage in Sudanese women: A cross-sectional study. Lancet Glob. Health 4, e864–e871 (2016).
      Google Scholar
    6. ↵
      1. C. M. McMillen et al
      ., Rift Valley fever virus induces fetal demise in Sprague-Dawley rats through direct placental infection. Sci. Adv. 4, eaau9812 (2018).
      FREE Full TextGoogle Scholar
    7. ↵
      1. WHO
      , Emergencies preparedness, response; Rift Valley Fever. World Health Organization (2018). https://www.who.int/csr/don/archive/disease/rift_valley_fever/en/. Accessed 16 November 2020.
      Google Scholar
    8. ↵
      1. H. H. Balkhy,
      2. Z. A. Memish
      , Rift Valley fever: An uninvited zoonosis in the Arabian peninsula. Int. J. Antimicrob. Agents 21, 153–157 (2003).
      CrossRefPubMedGoogle Scholar
    9. ↵
      1. O. Dar,
      2. S. Hogarth,
      3. S. McIntyre
      , Tempering the risk: Rift Valley fever and bioterrorism. Trop. Med. Int. Health 18, 1036–1041 (2013).
      CrossRefPubMedGoogle Scholar
    10. ↵
      1. The WHO R&D Blueprint Team
      , Prioritizing diseases for research and development in emergency contexts. World Health Organization (2018). https://www.who.int/activities/prioritizing-diseases-for-research-and-development-in-emergency-contexts. Accessed 16 November 2020.
      Google Scholar
    11. ↵
      1. NIAID Emerging Infectious Diseases/Pathogens
      , National Institute of Allergy and Infectious Diseases (2018). https://www.niaid.nih.gov/research/emerging-infectious-diseases-pathogens. Accessed 16 November 2020.
      Google Scholar
    12. ↵
      1. Virus Taxonomy
      , ICTV (International Committee on Taxonomy of Viruses) (2019). https://talk.ictvonline.org/taxonomy/. Accessed 16 November 2020.
      Google Scholar
    13. ↵
      1. A. N. Freiberg,
      2. M. B. Sherman,
      3. M. C. Morais,
      4. M. R. Holbrook,
      5. S. J. Watowich
      , Three-dimensional organization of Rift Valley fever virus revealed by cryoelectron tomography. J. Virol. 82, 10341–10348 (2008).
      Abstract/FREE Full TextGoogle Scholar
    14. ↵
      1. J. T. Huiskonen,
      2. A. K. Overby,
      3. F. Weber,
      4. K. Grünewald
      , Electron cryo-microscopy and single-particle averaging of rift Valley fever virus: Evidence for GN-GC glycoprotein heterodimers. J. Virol. 83, 3762–3769 (2009).
      Abstract/FREE Full TextGoogle Scholar
    15. ↵
      1. I. Phoenix et al
      ., N-glycans on the Rift Valley fever virus envelope glycoproteins Gn and Gc redundantly support viral infection via DC-SIGN. Viruses 8, 149 (2016).
      CrossRefGoogle Scholar
    16. ↵
      1. M. Spiegel,
      2. T. Plegge,
      3. S. Pöhlmann
      , The role of phlebovirus glycoproteins in viral entry, assembly and release. Viruses 8, 202 (2016).
      CrossRefPubMedGoogle Scholar
    17. ↵
      1. B. Niklasson,
      2. C. J. Peters,
      3. E. Bengtsson,
      4. E. Norrby
      , Rift Valley fever virus vaccine trial: Study of neutralizing antibody response in humans. Vaccine 3, 123–127 (1985).
      CrossRefPubMedGoogle Scholar
    18. ↵
      1. P. R. Pittman et al
      ., Rift Valley fever MP-12 vaccine Phase 2 clinical trial: Safety, immunogenicity, and genetic characterization of virus isolates. Vaccine 34, 523–530 (2016).
      Google Scholar
    19. ↵
      1. K. Spik et al
      ., Immunogenicity of combination DNA vaccines for Rift Valley fever virus, tick-borne encephalitis virus, Hantaan virus, and Crimean Congo hemorrhagic fever virus. Vaccine 24, 4657–4666 (2006).
      CrossRefPubMedGoogle Scholar
    20. ↵
      1. J. C. Morrill,
      2. C. J. Peters
      , Mucosal immunization of rhesus macaques with Rift Valley Fever MP-12 vaccine. J. Infect. Dis. 204, 617–625 (2011).
      CrossRefPubMedGoogle Scholar
    21. ↵
      1. B. Faburay et al
      ., A glycoprotein subunit vaccine elicits a strong Rift Valley fever virus neutralizing antibody response in sheep. Vector Borne Zoonotic Dis. 14, 746–756 (2014).
      CrossRefGoogle Scholar
    22. ↵
      1. B. S. Niklasson,
      2. G. F. Meadors,
      3. C. J. Peters
      , Active and passive immunization against Rift Valley fever virus infection in Syrian hamsters. Acta Pathol. Microbiol. Immunol. Scand. [C] 92, 197–200 (1984).
      PubMedGoogle Scholar
    23. ↵
      1. J. F. Papin et al
      ., Recombinant Rift Valley fever vaccines induce protective levels of antibody in baboons and resistance to lethal challenge in mice. Proc. Natl. Acad. Sci. U.S.A. 108, 14926–14931 (2011).
      Abstract/FREE Full TextGoogle Scholar
    24. ↵
      1. S. M. de Boer et al
      ., Heparan sulfate facilitates Rift Valley fever virus entry into the cell. J. Virol. 86, 13767–13771 (2012).
      Abstract/FREE Full TextGoogle Scholar
    25. ↵
      1. B. Harmon et al
      ., Rift Valley fever virus strain MP-12 enters mammalian host cells via caveola-mediated endocytosis. J. Virol. 86, 12954–12970 (2012).
      Abstract/FREE Full TextGoogle Scholar
    26. ↵
      1. P. Y. Lozach et al
      ., DC-SIGN as a receptor for phleboviruses. Cell Host Microbe 10, 75–88 (2011).
      CrossRefPubMedGoogle Scholar
    27. ↵
      1. S. Halldorsson et al
      ., Shielding and activation of a viral membrane fusion protein. Nat. Commun. 9, 349 (2018).
      CrossRefPubMedGoogle Scholar
    28. ↵
      1. S. M. de Boer et al
      ., Acid-activated structural reorganization of the Rift Valley fever virus Gc fusion protein. J. Virol. 86, 13642–13652 (2012).
      Abstract/FREE Full TextGoogle Scholar
    29. ↵
      1. P. Guardado-Calvo et al
      ., A glycerophospholipid-specific pocket in the RVFV class II fusion protein drives target membrane insertion. Science 358, 663–667 (2017).
      Abstract/FREE Full TextGoogle Scholar
    30. ↵
      1. Q. Wang et al
      ., Neutralization mechanism of human monoclonal antibodies against Rift Valley fever virus. Nat. Microbiol. 4, 1231–1241 (2019).
      Google Scholar
    31. ↵
      1. T. G. Besselaar,
      2. N. K. Blackburn
      , Study of the Surface Glycoprotein of Rift Valley Fever Virus Using Monoclonal Antibodies (University of Witwatersrand, Johannesburg, South Africa, 1992).
      Google Scholar
    32. ↵
      1. E. N. Grossi-Soyster et al
      ., Rift Valley fever seroprevalence in coastal Kenya. Am. J. Trop. Med. Hyg. 97, 115–120 (2017).
      Google Scholar
    33. ↵
      1. M. A. Turchaninova et al
      ., High-quality full-length immunoglobulin profiling with unique molecular barcoding. Nat. Protoc. 11, 1599–1616 (2016).
      CrossRefPubMedGoogle Scholar
    34. ↵
      1. M. Dessau,
      2. Y. Modis
      , Crystal structure of glycoprotein C from Rift Valley fever virus. Proc. Natl. Acad. Sci. U.S.A. 110, 1696–1701 (2013).
      Abstract/FREE Full TextGoogle Scholar
    35. ↵
      1. Y. Wu et al
      ., Structures of phlebovirus glycoprotein Gn and identification of a neutralizing antibody epitope. Proc. Natl. Acad. Sci. U.S.A. 114, E7564–E7573 (2017).
      Abstract/FREE Full TextGoogle Scholar
    36. ↵
      1. B. S. Thompson et al
      ., A therapeutic antibody against west nile virus neutralizes infection by blocking fusion within endosomes. PLoS Pathog. 5, e1000453 (2009).
      CrossRefPubMedGoogle Scholar
    37. ↵
      1. S. Ohkuma,
      2. B. Poole
      , Fluorescence probe measurement of the intralysosomal pH in living cells and the perturbation of pH by various agents. Proc. Natl. Acad. Sci. U.S.A. 75, 3327–3331 (1978).
      Abstract/FREE Full TextGoogle Scholar
    38. ↵
      1. R. Lathan et al
      ., Innate immune basis for Rift Valley fever susceptibility in mouse models. Sci. Rep. 7, 7096 (2017).
      Google Scholar
    39. ↵
      1. H. N. Cartwright,
      2. D. J. Barbeau,
      3. A. K. McElroy
      , Rift Valley fever virus is lethal in different inbred mouse strains independent of sex. Front. Microbiol. 11, 1962 (2020).
      CrossRefGoogle Scholar
    40. ↵
      1. E. R. Allen et al
      ., A protective monoclonal antibody targets a site of vulnerability on the surface of Rift Valley fever virus. Cell Rep. 25, 3750–3758.e4 (2018).
      CrossRefGoogle Scholar
    41. ↵
      1. T. Ikegami et al
      ., Distinct virulence of Rift Valley fever phlebovirus strains from different genetic lineages in a mouse model. PLoS One 12, e0189250 (2017).
      PubMedGoogle Scholar
    42. ↵
      1. X. Yu,
      2. P. A. McGraw,
      3. F. S. House,
      4. J. E. Crowe Jr
      , An optimized electrofusion-based protocol for generating virus-specific human monoclonal antibodies. J. Immunol. Methods 336, 142–151 (2008).
      CrossRefPubMedGoogle Scholar
    43. ↵
      1. S. A. Smith,
      2. J. E. Crowe Jr
      , Use of human hybridoma technology to isolate human monoclonal antibodies. Microbiol. Spectr. 3, AID-0027–AID-2014 (2015).
      Google Scholar
    44. ↵
      1. G. R. McLean,
      2. A. Nakouzi,
      3. A. Casadevall,
      4. N. S. Green
      , Human and murine immunoglobulin expression vector cassettes. Mol. Immunol. 37, 837–845 (2000).
      CrossRefPubMedGoogle Scholar
    45. ↵
      1. V. Giudicelli,
      2. M. P. Lefranc
      , IMGT/junctionanalysis: IMGT standardized analysis of the V-J and V-D-J junctions of the rearranged immunoglobulins (IG) and T cell receptors (TR). Cold Spring Harb. Protoc. 2011, 716–725 (2011).
      CrossRefPubMedGoogle Scholar
    46. ↵
      1. M. Habjan et al
      ., Efficient production of Rift Valley fever virus-like particles: The antiviral protein MxA can inhibit primary transcription of bunyaviruses. Virology 385, 400–408 (2009).
      CrossRefPubMedGoogle Scholar
    47. ↵
      1. B. B. Gowen et al
      ., In vitro and in vivo activities of T-705 against arenavirus and bunyavirus infections. Antimicrob. Agents Chemother. 51, 3168–3176 (2007).
      Abstract/FREE Full TextGoogle Scholar
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