***Safety First***
This machine is very dangerous. I would not recommend it's construction unless you know what you are doing.
To avoid any risk, I set a countdown and leave the machine alone until the job is done. I do have a Geiger counter to make sure I'm not receiving x-rays. The hand picture was only done once and for half a second of exposure :P
Introduction
This project started with a question one day taking a shower: can I build a decent X-Ray machine in the garage? I quickly found the answer, no. At least, not with what I knew or could make. I had to spend like 2 years (I was also studying physics at college) to improve my skills and knowledge.
Finally I started designing the whole housing with Autodesk Fusion 360, limited by my 3D printer's area. I wanted to design a powerful machine, and I wanted it to be plug and play, so the power supply would have to be inside. I had to think a lot how to put inside that housing every single part of the machine, this was an absolut hell since I was limited by the size of my printer.
To solve that problem, I decided to make two levels inside the machine. The first level would contain the main 48V PSU, the Arduino board and the high voltage transformer. The second level would be above, containing the ZVS, another 12V PSU and a step-down converter for the tube's filament. The waterproof box that contains the voltage multiplier and the tube would be at the front of the machine occupying both levels. The machine has no buttons. it's controlled via USB, using the Arduino IDE's monitor to send commands to the machine.
Also, because this machine is my final degree project at college, I wanted it to have my college's logo on it, the one shown on top.
The machine is very powerful but probably not as powerful as any professional unit you can buy. Well the idea was to just learn how to make one and that is checked.
I also recorded most of the design & construction process and made a short video:
If you want to see two live tests, see the file "tests.mp4".
Note: this project contains my subproject https://hackaday.io/project/162935-piernass-fast-zvs-mazzilli-driver
Wow. I have worked for 37 years in medical x-ray installation, repair, and maintenance. I have to say I am very impressed with your ability to consolidate so many disciplines of study into one project. Technically I think I could do this. But, I don't have the patience necessary to solve the multitude of problems that you had to solve in building this machine and then creating a 3D image of objects in your CT application. Kudos to you and may you fare well in your chosen profession, whatever it may be.
You commented that you tried to make fluoroscopic images but it was riddled with "bright pixel" artifacts. First try moving the camera out of the beam. Use a mirror angled to the incident plane. Even if it doesn't fix the artifact your camera will live longer. Second, collimate the beam. Use a lead lined cone to limit the exposed area to the ROI at the incident plane. Looking at the screen in your photos, the entire screen is aglow. You don't need all that scatter adding noise to the image. You could also experiment with thin aluminum filters placed at the port to eliminate low energy photons; low energy adds little to the image and much to the noise.
With continuous x-ray you may have smeared flouroscopic images. This is inherent to the decay rate of the screen. The fix is a faster screen. Ideally, you would have a rapid screen and pulse the x-ray syncronized to the CCD image capture time of your camera in movie mode. The idea is to create a stop-action image just as a strobe light does for photography. That would take a lot of tinkering; a lot has to happen in 40ms.
If you get fluoro to work you can capture things like fluid flow through a device. You can enhance fluid imaging with a radio opaque dye -- tincture of iodine comes to mind.
I am certain that you are aware already but just in case; a fixed anode requires a long time to cool. Diligent adherence to the tube cooling curve will prolong the life of the tube.
Again, many good wishes for your future endeavors.