UniProtKB - O88746 (TOM1_MOUSE)
UniProt
O88746 - TOM1_MOUSE
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Protein
Target of Myb protein 1
Gene
Tom1
Organism
Mus musculus (Mouse)
Sequence features
Status
Functioni
May be involved in intracellular trafficking. Probable association with membranes.
GO - Molecular functioni
- clathrin binding Source: MGI
GO - Biological processi
- intracellular protein transport Source: InterPro
Keywords - Biological processi
Protein transport, TransportNames & Taxonomyi
| Protein namesi | Recommended name: Target of Myb protein 1 |
| Gene namesi | Name:Tom1 |
| Organismi | Mus musculus (Mouse) |
| Taxonomic identifieri | 10090 [NCBI] |
| Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus |
| Proteomesi | UP000000589 Componenti: Chromosome 8 |
Organism-specific databases
| MGIi | MGI:1338026. Tom1. |
Subcellular locationi
- Cytoplasm Curated
- Membrane Curated; Peripheral membrane protein Curated
GO - Cellular componenti
- cytoplasm Source: MGI
- cytosol Source: UniProtKB
- early endosome Source: UniProtKB
- endosome Source: MGI
- extracellular exosome Source: MGI
- membrane Source: UniProtKB
Keywords - Cellular componenti
Cytoplasm, MembranePTM / Processingi
Molecule processing
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | Actions |
|---|---|---|---|---|---|---|
| Chaini | 1 – 492 | 492 | Target of Myb protein 1 | PRO_0000072629 | Add BLAST |
Amino acid modifications
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | Actions |
|---|---|---|---|---|---|---|
| Modified residuei | 1 – 1 | 1 | N-acetylmethionineBy similarity | |||
| Modified residuei | 11 – 11 | 1 | PhosphoserineBy similarity | |||
| Modified residuei | 160 – 160 | 1 | PhosphoserineCombined sources | |||
| Modified residuei | 164 – 164 | 1 | PhosphothreonineCombined sources | |||
| Modified residuei | 176 – 176 | 1 | PhosphoserineCombined sources | |||
| Modified residuei | 180 – 180 | 1 | PhosphoserineCombined sources | |||
| Modified residuei | 208 – 208 | 1 | PhosphoserineCombined sources | |||
| Modified residuei | 355 – 355 | 1 | PhosphoserineBy similarity | |||
| Modified residuei | 376 – 376 | 1 | PhosphoserineBy similarity | |||
| Modified residuei | 462 – 462 | 1 | PhosphoserineBy similarity |
Keywords - PTMi
Acetylation, PhosphoproteinProteomic databases
| MaxQBi | O88746. |
| PaxDbi | O88746. |
| PRIDEi | O88746. |
PTM databases
| iPTMneti | O88746. |
| PhosphoSitei | O88746. |
Miscellaneous databases
| PMAP-CutDB | O88746. |
Expressioni
Tissue specificityi
Ubiquitous. In adult brain, it is highly expressed at the mesencephalic level, in the hippocampal formation and medial lemniscus. In cerebellum, it is highly expressed in Purkinje cells and granular layers.
Developmental stagei
Ubiquitously expressed in the embryo, with a higher expression in the intestines.
Gene expression databases
| Bgeei | O88746. |
| CleanExi | MM_TOM1. |
| ExpressionAtlasi | O88746. baseline. |
| Genevisiblei | O88746. MM. |
Interactioni
Subunit structurei
Interacts with ZFYVE16; interaction is required to target it to endosomes.By similarity
Binary interactionsi
| With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| Tollip | Q9QZ06 | 2 | EBI-74264,EBI-74272 |
Protein-protein interaction databases
| BioGridi | 204274. 1 interaction. |
| IntActi | O88746. 4 interactions. |
| MINTi | MINT-4138215. |
| STRINGi | 10090.ENSMUSP00000036849. |
Structurei
3D structure databases
| ProteinModelPortali | O88746. |
| SMRi | O88746. Positions 2-153, 215-309. |
| ModBasei | Search... |
| MobiDBi | Search... |
Family & Domainsi
Domains and Repeats
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | Actions |
|---|---|---|---|---|---|---|
| Domaini | 20 – 152 | 133 | VHSPROSITE-ProRule annotation | Add BLAST | ||
| Domaini | 215 – 303 | 89 | GATPROSITE-ProRule annotation | Add BLAST |
Sequence similaritiesi
Belongs to the TOM1 family.Curated
Contains 1 GAT domain.PROSITE-ProRule annotation
Contains 1 VHS domain.PROSITE-ProRule annotation
Phylogenomic databases
| eggNOGi | KOG1087. Eukaryota. ENOG410Y26G. LUCA. |
| HOGENOMi | HOG000285970. |
| HOVERGENi | HBG025068. |
| InParanoidi | O88746. |
| OMAi | EDSGQHA. |
| OrthoDBi | EOG75B859. |
| PhylomeDBi | O88746. |
| TreeFami | TF314105. |
Family and domain databases
| Gene3Di | 1.20.58.160. 1 hit. 1.25.40.90. 1 hit. |
| InterProi | IPR008942. ENTH_VHS. IPR004152. GAT_dom. IPR014645. TOM1. IPR002014. VHS_dom. IPR018205. VHS_subgr. [Graphical view] |
| Pfami | PF03127. GAT. 1 hit. PF00790. VHS. 1 hit. [Graphical view] |
| PIRSFi | PIRSF036948. TOM1. 1 hit. |
| SMARTi | SM00288. VHS. 1 hit. [Graphical view] |
| SUPFAMi | SSF48464. SSF48464. 1 hit. |
| PROSITEi | PS50909. GAT. 1 hit. PS50179. VHS. 1 hit. [Graphical view] |
Sequences (2)i
Sequence statusi: Complete.
This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: O88746-1) [UniParc]FASTAAdd to basket
This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
10 20 30 40 50
MDFLLGNPFS SPVGQRIEKA TDGSLQSEDW ALNMEICDII NETEEGPKDA
60 70 80 90 100
FRAVKKRIMG NKNFHEVMLA LTVLETCVKN CGHRFHVLVA NQDFVENVLV
110 120 130 140 150
RTILPKNNPP TIVHDKVLNL IQSWADAFRS SPDLTGVVAV YEDLRRKGLE
160 170 180 190 200
FPMTDLDMLS PIHTPQRTVF NSETPSRQNS VSSNTSQRGD LSQHATPLPT
210 220 230 240 250
PAVLPGDSPI TPTPEQIGKL RSELEMVSGN VRVMSEMLTE LVPTQVEPAD
260 270 280 290 300
LELLQELNRT CRAMQQRILE LIPRISNEQL TEELLMINDN LNNVFLRHER
310 320 330 340 350
FERFRTGQTA KASSEAELAT DLIDMGPDPA ATNNLSSQLA GMNLGSRSVR
360 370 380 390 400
AGLQSLETSG HLEDDFDMFA LTRGSSLADQ RKGVKYEAPQ TTDGLAGALD
410 420 430 440 450
ARQQSTGAIP ATQARIMEDI EQWLSTDVGN SAEEPSGVTS EEFDKFLEER
460 470 480 490
AKAADRLPNL ASPSAEGPPR PSPGTAPRRK TQEKDDDMLF AL
Alternative sequence
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | Actions |
|---|---|---|---|---|---|---|
| Alternative sequencei | 1 – 324 | 324 | Missing in isoform 2. 1 Publication | VSP_003991 | Add BLAST | |
| Alternative sequencei | 325 – 343 | 19 | MGPDP…LAGMN → MGRANGTAGLLPGPSVSAD in isoform 2. 1 Publication | VSP_003992 | Add BLAST |
Sequence databases
|
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AJ006972 mRNA. Translation: CAA07361.1. AK004063 mRNA. Translation: BAE43160.1. AK028398 mRNA. Translation: BAC25932.1. BC021633 mRNA. Translation: AAH21633.1. |
| CCDSi | CCDS52601.1. [O88746-1] |
| RefSeqi | NP_035752.1. NM_011622.3. [O88746-1] |
| UniGenei | Mm.1967. Mm.290868. |
Genome annotation databases
| Ensembli | ENSMUST00000165630; ENSMUSP00000130854; ENSMUSG00000042870. [O88746-1] |
| GeneIDi | 21968. |
| UCSCi | uc009mha.2. mouse. [O88746-1] uc009mhb.2. mouse. [O88746-2] |
Keywords - Coding sequence diversityi
Alternative splicingCross-referencesi
Sequence databases
|
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AJ006972 mRNA. Translation: CAA07361.1. AK004063 mRNA. Translation: BAE43160.1. AK028398 mRNA. Translation: BAC25932.1. BC021633 mRNA. Translation: AAH21633.1. |
| CCDSi | CCDS52601.1. [O88746-1] |
| RefSeqi | NP_035752.1. NM_011622.3. [O88746-1] |
| UniGenei | Mm.1967. Mm.290868. |
3D structure databases
| ProteinModelPortali | O88746. |
| SMRi | O88746. Positions 2-153, 215-309. |
| ModBasei | Search... |
| MobiDBi | Search... |
Protein-protein interaction databases
| BioGridi | 204274. 1 interaction. |
| IntActi | O88746. 4 interactions. |
| MINTi | MINT-4138215. |
| STRINGi | 10090.ENSMUSP00000036849. |
PTM databases
| iPTMneti | O88746. |
| PhosphoSitei | O88746. |
Proteomic databases
| MaxQBi | O88746. |
| PaxDbi | O88746. |
| PRIDEi | O88746. |
Protocols and materials databases
| Structural Biology Knowledgebase | Search... |
Genome annotation databases
| Ensembli | ENSMUST00000165630; ENSMUSP00000130854; ENSMUSG00000042870. [O88746-1] |
| GeneIDi | 21968. |
| UCSCi | uc009mha.2. mouse. [O88746-1] uc009mhb.2. mouse. [O88746-2] |
Organism-specific databases
| CTDi | 10043. |
| MGIi | MGI:1338026. Tom1. |
Phylogenomic databases
| eggNOGi | KOG1087. Eukaryota. ENOG410Y26G. LUCA. |
| HOGENOMi | HOG000285970. |
| HOVERGENi | HBG025068. |
| InParanoidi | O88746. |
| OMAi | EDSGQHA. |
| OrthoDBi | EOG75B859. |
| PhylomeDBi | O88746. |
| TreeFami | TF314105. |
Miscellaneous databases
| NextBioi | 301662. |
| PMAP-CutDB | O88746. |
| PROi | O88746. |
| SOURCEi | Search... |
Gene expression databases
| Bgeei | O88746. |
| CleanExi | MM_TOM1. |
| ExpressionAtlasi | O88746. baseline. |
| Genevisiblei | O88746. MM. |
Family and domain databases
| Gene3Di | 1.20.58.160. 1 hit. 1.25.40.90. 1 hit. |
| InterProi | IPR008942. ENTH_VHS. IPR004152. GAT_dom. IPR014645. TOM1. IPR002014. VHS_dom. IPR018205. VHS_subgr. [Graphical view] |
| Pfami | PF03127. GAT. 1 hit. PF00790. VHS. 1 hit. [Graphical view] |
| PIRSFi | PIRSF036948. TOM1. 1 hit. |
| SMARTi | SM00288. VHS. 1 hit. [Graphical view] |
| SUPFAMi | SSF48464. SSF48464. 1 hit. |
| PROSITEi | PS50909. GAT. 1 hit. PS50179. VHS. 1 hit. [Graphical view] |
| ProtoNeti | Search... |
Publicationsi
- "TOM1 genes map to human chromosome 22q13.1 and mouse chromosome 8C1 and encode proteins similar to the endosomal proteins HGS and STAM."
Seroussi E., Kedra D., Kost-Alimova M., Sandberg-Nordqvist A.-C., Fransson I., Jacobs J.F.M., Fu Y., Pan H.-Q., Roe B.A., Imreh S., Dumanski J.P.
Genomics 57:380-388(1999) [PubMed] [Europe PMC] [Abstract]Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). - "The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. Hayashizaki Y.
Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).Strain: C57BL/6J.
Tissue: Thymus. - "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).Tissue: Colon. - "Large-scale phosphorylation analysis of mouse liver."
Villen J., Beausoleil S.A., Gerber S.A., Gygi S.P.
Proc. Natl. Acad. Sci. U.S.A. 104:1488-1493(2007) [PubMed] [Europe PMC] [Abstract]Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-176, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].Tissue: Liver. - "A tissue-specific atlas of mouse protein phosphorylation and expression."
Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R., Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.
Cell 143:1174-1189(2010) [PubMed] [Europe PMC] [Abstract]Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-160; THR-164; SER-176; SER-180 AND SER-208, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].Tissue: Brain, Brown adipose tissue, Heart, Kidney, Liver, Lung, Pancreas, Spleen and Testis.
Entry informationi
| Entry namei | TOM1_MOUSE | ||||||||
| Accessioni | O88746Primary (citable) accession number: O88746 Secondary accession number(s): Q3V4C6, Q9D120 | ||||||||
| Entry historyi |
| ||||||||
| Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
Miscellaneousi
Keywords - Technical termi
Complete proteome, Reference proteomeDocuments
- MGD cross-referencesMouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
- SIMILARITY commentsIndex of protein domains and families
External Data
Dasty 3Similar proteinsi
Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:| 100% | UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry. |
| 90% | UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence). |
| 50% | UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster. |